Wall clock time and date at job start Mon Mar 30 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50698 * 109.47440 * 2 1 4 4 C 1.37473 * 119.84615 * 266.23053 * 3 2 1 5 5 C 1.38613 * 120.25642 * 179.97438 * 4 3 2 6 6 C 1.37687 * 120.18933 * 0.02562 * 5 4 3 7 7 C 1.39737 * 120.38959 * 359.97438 * 6 5 4 8 8 S 1.75782 * 130.15293 * 180.02562 * 7 6 5 9 9 C 1.69972 * 93.26254 * 179.97438 * 8 7 6 10 10 F 1.35099 * 124.04027 * 179.97438 * 9 8 7 11 11 C 1.36882 * 111.91631 * 359.97438 * 9 8 7 12 12 C 1.40745 * 123.33910 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99807 * 142.83569 * 12 11 9 14 14 C 1.39638 * 120.00005 * 322.83974 * 12 11 9 15 15 N 1.31168 * 120.00065 * 343.99419 * 14 12 11 16 16 Si 1.86797 * 120.00033 * 163.99401 * 14 12 11 17 17 H 1.48507 * 109.46936 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47472 * 119.99925 * 16 14 12 19 19 H 1.48506 * 109.47083 * 240.00219 * 16 14 12 20 20 C 1.39390 * 119.60688 * 0.02562 * 7 6 5 21 21 H 1.09005 * 109.47443 * 59.99944 * 1 2 3 22 22 H 1.08994 * 109.47510 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47503 * 300.00123 * 1 2 3 24 24 H 1.09001 * 109.47503 * 239.99877 * 2 1 3 25 25 H 1.09005 * 109.47443 * 120.00056 * 2 1 3 26 26 H 1.08009 * 119.87237 * 0.27274 * 4 3 2 27 27 H 1.07996 * 119.90716 * 179.97438 * 5 4 3 28 28 H 1.08009 * 119.80484 * 179.97438 * 6 5 4 29 29 H 0.96995 * 119.99934 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3343 2.0397 -1.1898 5 6 2.7965 3.3464 -1.1998 6 6 2.9567 4.0332 -0.0172 7 6 2.6550 3.4210 1.2022 8 16 2.7611 4.0467 2.8415 9 6 2.2005 2.5992 3.5340 10 9 2.0403 2.4085 4.8618 11 6 1.9309 1.6499 2.5854 12 6 1.4542 0.3620 2.8936 13 1 0.7300 -0.1142 2.2492 14 6 1.9174 -0.2999 4.0325 15 7 3.0036 0.1179 4.6376 16 14 0.9904 -1.7804 4.6943 17 1 -0.1932 -2.0466 3.8377 18 1 1.8833 -2.9669 4.6882 19 1 0.5435 -1.5042 6.0833 20 6 2.1900 2.1071 1.2167 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.2063 1.5072 -2.1208 27 1 3.0324 3.8270 -2.1377 28 1 3.3177 5.0510 -0.0321 29 1 3.3256 -0.3421 5.4285 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396313789.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:44 Heat of formation + Delta-G solvation = -33.120752 kcal Electronic energy + Delta-G solvation = -16043.872394 eV Core-core repulsion = 13357.466971 eV Total energy + Delta-G solvation = -2686.405423 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.78624 -40.45359 -36.47469 -34.96183 -34.13223 -30.33418 -29.68693 -27.59009 -24.47074 -24.07826 -21.90932 -21.46767 -18.98217 -18.51606 -17.04736 -16.70842 -16.58100 -15.93497 -15.80379 -15.20667 -14.94074 -14.53035 -14.27096 -14.16923 -13.65345 -13.36695 -13.04692 -12.87580 -12.77488 -12.46962 -12.13836 -11.99158 -11.69181 -11.51007 -11.30424 -11.04219 -10.88216 -9.91199 -8.99128 -8.71851 -8.36895 -6.32773 0.16700 0.47377 0.87638 1.25290 1.35481 1.49383 1.50374 1.82445 2.20397 2.85166 3.21306 3.93241 4.14227 4.16733 4.44166 4.52509 4.67584 4.69353 4.83067 4.88432 5.10266 5.16808 5.22762 5.36467 5.42967 5.49612 5.55315 5.63567 5.72216 5.91117 6.23534 6.38865 6.76522 6.85503 8.37671 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021398 B = 0.011308 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.245294 B = 2475.517388 C = 3559.580681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.047 4.047 4 C -0.131 4.131 5 C -0.099 4.099 6 C -0.107 4.107 7 C -0.146 4.146 8 S 0.050 5.950 9 C -0.224 4.224 10 F -0.136 7.136 11 C 0.049 3.951 12 C -0.462 4.462 13 H 0.110 0.890 14 C 0.023 3.977 15 N -0.824 5.824 16 Si 0.974 3.026 17 H -0.244 1.244 18 H -0.264 1.264 19 H -0.278 1.278 20 C -0.087 4.087 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.157 0.843 27 H 0.167 0.833 28 H 0.141 0.859 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 0.869 -10.998 11.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 C -0.049 4.049 4 C -0.152 4.152 5 C -0.119 4.119 6 C -0.131 4.131 7 C -0.261 4.261 8 S 0.309 5.691 9 C -0.357 4.357 10 F -0.116 7.116 11 C 0.038 3.962 12 C -0.493 4.493 13 H 0.127 0.873 14 C -0.191 4.191 15 N -0.450 5.450 16 Si 0.795 3.205 17 H -0.167 1.167 18 H -0.188 1.188 19 H -0.204 1.204 20 C -0.095 4.095 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.053 0.947 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.174 0.826 27 H 0.185 0.815 28 H 0.159 0.841 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.392 2.122 -10.014 10.330 hybrid contribution -0.410 -1.821 1.126 2.180 sum -1.802 0.301 -8.888 9.073 Atomic orbital electron populations 1.21678 0.94308 1.02050 1.01334 1.20751 0.96778 0.92248 1.03371 1.19981 0.97435 0.96638 0.90855 1.21173 1.01168 0.95821 0.97020 1.21325 0.98421 0.94360 0.97803 1.20743 1.02250 1.00706 0.89417 1.22680 1.08011 0.98168 0.97242 1.81542 1.75369 1.14996 0.97150 1.20894 1.33440 1.00314 0.81099 1.91165 1.95003 1.94956 1.30469 1.17955 0.95380 0.94149 0.88700 1.19537 1.22419 0.99103 1.08285 0.87284 1.26767 0.94593 1.01941 0.95820 1.70035 1.18932 1.39162 1.16859 0.85253 0.79632 0.77033 0.78542 1.16703 1.18844 1.20392 1.19353 1.02415 0.93744 0.94015 0.91506 0.91249 0.94654 0.89350 0.91189 0.82574 0.81544 0.84080 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.08 71.98 0.65 -3.60 15 2 C -0.09 -3.25 5.35 29.84 0.16 -3.09 15 3 C -0.05 -1.81 5.18 -19.47 -0.10 -1.91 15 4 C -0.13 -3.84 9.64 22.18 0.21 -3.63 15 5 C -0.10 -2.68 10.03 22.23 0.22 -2.46 15 6 C -0.11 -3.57 10.06 22.50 0.23 -3.34 15 7 C -0.15 -6.35 6.44 22.91 0.15 -6.20 15 8 S 0.05 2.37 22.96 -56.49 -1.30 1.08 15 9 C -0.22 -12.75 7.31 67.50 0.49 -12.26 15 10 F -0.14 -8.33 14.96 44.97 0.67 -7.66 15 11 C 0.05 2.71 5.47 -20.80 -0.11 2.60 15 12 C -0.46 -24.71 7.01 23.22 0.16 -24.55 15 13 H 0.11 5.33 4.15 -2.91 -0.01 5.32 15 14 C 0.02 1.24 4.89 85.13 0.42 1.66 15 15 N -0.82 -47.14 11.15 21.79 0.24 -46.89 15 16 Si 0.97 40.20 29.59 68.60 2.03 42.23 15 17 H -0.24 -9.34 7.11 99.48 0.71 -8.63 15 18 H -0.26 -10.28 7.11 99.48 0.71 -9.58 15 19 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 20 C -0.09 -4.10 5.99 -20.24 -0.12 -4.22 15 21 H 0.07 1.76 8.14 -2.38 -0.02 1.74 15 22 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.03 1.31 6.84 -2.39 -0.02 1.29 15 24 H 0.09 2.41 8.05 -2.39 -0.02 2.40 15 25 H 0.07 2.90 5.52 -2.38 -0.01 2.88 15 26 H 0.16 3.32 8.06 -2.91 -0.02 3.29 15 27 H 0.17 2.94 8.06 -2.91 -0.02 2.92 15 28 H 0.14 3.84 8.06 -2.91 -0.02 3.82 15 29 H 0.28 14.88 8.30 -92.71 -0.77 14.11 15 Total: -1.00 -66.96 259.75 5.19 -61.77 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.18 Total: 10.48 kcal Atomic # 6 Polarization: -63.37 SS G_CDS: 2.36 Total: -61.01 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.24 Total: -46.89 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.67 Total: -7.66 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.30 Total: 1.08 kcal Total: -66.96 5.19 -61.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313789.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.647 kcal (2) G-P(sol) polarization free energy of solvation -66.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds