Wall clock time and date at job start Mon Mar 30 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46976 * 2 1 4 4 C 1.31871 * 122.55359 * 264.96858 * 3 2 1 5 5 S 1.75308 * 111.33606 * 180.02562 * 4 3 2 6 6 C 1.75906 * 92.17598 * 0.02562 * 5 4 3 7 7 C 1.39420 * 109.76012 * 0.02562 * 6 5 4 8 8 C 1.41358 * 119.00943 * 179.97438 * 7 6 5 9 9 C 1.38017 * 120.87995 * 0.02562 * 8 7 6 10 10 F 1.35098 * 119.64392 * 179.97438 * 9 8 7 11 11 C 1.38064 * 120.70941 * 359.97438 * 9 8 7 12 12 C 1.40381 * 119.86360 * 359.97438 * 11 9 8 13 13 C 1.40926 * 120.09159 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00096 * 205.03593 * 13 12 11 15 15 C 1.39917 * 119.99753 * 25.03903 * 13 12 11 16 16 N 1.30868 * 120.00473 * 17.95759 * 15 13 12 17 17 Si 1.86803 * 119.99581 * 197.94998 * 15 13 12 18 18 H 1.48496 * 109.46850 * 94.69389 * 17 15 13 19 19 H 1.48509 * 109.46880 * 214.68863 * 17 15 13 20 20 H 1.48494 * 109.47509 * 334.68993 * 17 15 13 21 21 H 1.09007 * 109.47443 * 300.00625 * 1 2 3 22 22 H 1.09003 * 109.47015 * 60.00247 * 1 2 3 23 23 H 1.08999 * 109.47421 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47217 * 239.99759 * 2 1 3 25 25 H 1.08999 * 109.46537 * 119.99649 * 2 1 3 26 26 H 1.07999 * 124.33576 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.55672 * 180.02562 * 8 7 6 28 28 H 1.08003 * 120.06640 * 180.27364 * 11 9 8 29 29 H 0.96995 * 120.00662 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0573 -1.1072 5 16 2.9063 3.6883 -0.7675 6 6 2.6716 3.4781 0.9631 7 6 2.1939 2.1940 1.2215 8 6 1.9364 1.8145 2.5586 9 6 2.1513 2.6956 3.5989 10 9 1.8963 2.3068 4.8674 11 6 2.6240 3.9701 3.3573 12 6 2.8910 4.3787 2.0410 13 6 3.3732 5.6786 1.7888 14 1 3.2044 6.1401 0.8270 15 6 4.0706 6.3715 2.7844 16 7 4.5817 5.7212 3.7986 17 14 4.2724 8.2248 2.6658 18 1 3.1965 8.8905 3.4433 19 1 5.5952 8.6150 3.2167 20 1 4.1859 8.6422 1.2433 21 1 -0.3634 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 2.3019 1.6285 -2.0967 27 1 1.5666 0.8218 2.7688 28 1 2.7927 4.6496 4.1796 29 1 5.0656 6.2015 4.4886 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396313917.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:39 Heat of formation + Delta-G solvation = -32.389587 kcal Electronic energy + Delta-G solvation = -15520.535327 eV Core-core repulsion = 12834.161609 eV Total energy + Delta-G solvation = -2686.373718 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.73560 -38.25950 -35.65110 -33.47594 -31.17558 -29.84362 -27.86548 -25.65522 -23.65554 -21.89829 -20.97531 -18.99735 -17.38563 -16.52288 -15.69972 -15.20716 -14.93658 -14.41449 -14.29989 -13.83302 -13.58527 -12.97008 -12.88072 -12.37084 -11.92783 -11.80185 -11.63905 -11.52245 -11.32433 -10.81182 -10.73642 -10.61512 -10.47906 -9.90677 -9.78691 -9.57145 -9.29728 -8.26443 -7.34898 -7.05684 -6.72947 -4.61402 1.81744 2.46184 2.61438 2.91318 2.97308 3.00832 3.14473 3.32722 3.76109 4.35579 5.21070 5.26510 5.36337 5.48419 5.69764 5.78282 5.96712 6.10747 6.19067 6.22962 6.48564 6.50099 6.64041 6.81974 6.88979 7.00827 7.20671 7.38469 7.57840 7.65537 7.94732 8.31286 8.53013 8.56738 9.90382 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024125 B = 0.008388 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.358721 B = 3337.479786 C = 4339.500452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C -0.090 4.090 4 C -0.213 4.213 5 S 0.049 5.951 6 C -0.214 4.214 7 C -0.017 4.017 8 C -0.256 4.256 9 C 0.127 3.873 10 F -0.164 7.164 11 C -0.213 4.213 12 C 0.164 3.836 13 C -0.445 4.445 14 H 0.086 0.914 15 C 0.076 3.924 16 N -0.773 5.773 17 Si 0.914 3.086 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.258 1.258 21 H 0.058 0.942 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.104 0.896 28 H 0.134 0.866 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -3.710 -4.846 6.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.104 4.104 4 C -0.347 4.347 5 S 0.313 5.687 6 C -0.329 4.329 7 C -0.024 4.024 8 C -0.279 4.279 9 C 0.107 3.893 10 F -0.143 7.143 11 C -0.237 4.237 12 C 0.158 3.842 13 C -0.473 4.473 14 H 0.104 0.896 15 C -0.145 4.145 16 N -0.396 5.396 17 Si 0.738 3.262 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.182 1.182 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.167 0.833 27 H 0.122 0.878 28 H 0.152 0.848 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.351 -2.487 -5.571 6.538 hybrid contribution -0.287 -0.446 1.139 1.256 sum -2.638 -2.934 -4.432 5.933 Atomic orbital electron populations 1.21716 0.95241 1.00849 1.02332 1.20187 0.95696 0.92287 1.01964 1.19625 1.02572 0.96531 0.91656 1.24704 1.09431 0.99492 1.01038 1.83519 1.71636 1.11488 1.02021 1.22602 1.16631 0.97940 0.95706 1.18435 0.99782 0.92112 0.92077 1.19867 1.18075 0.99805 0.90169 1.17349 1.00216 0.94390 0.77328 1.91347 1.92427 1.91802 1.38713 1.21027 1.09537 0.94910 0.98246 1.16686 0.87813 0.91262 0.88417 1.19575 1.29293 0.98385 1.00043 0.89553 1.26001 0.93018 1.01455 0.94007 1.69830 1.22646 1.38348 1.08747 0.86180 0.78631 0.81207 0.80227 1.18923 1.19896 1.18153 0.92242 0.92919 0.93027 0.91810 0.91210 0.83272 0.87802 0.84795 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 37.16 0.37 -1.58 15 2 C -0.06 -0.93 6.05 -27.88 -0.17 -1.10 15 3 C -0.09 -1.70 5.23 -103.65 -0.54 -2.25 15 4 C -0.21 -3.84 10.75 28.83 0.31 -3.53 15 5 S 0.05 1.00 22.82 -107.50 -2.45 -1.45 15 6 C -0.21 -5.20 6.36 -37.64 -0.24 -5.44 15 7 C -0.02 -0.38 6.01 -105.39 -0.63 -1.02 15 8 C -0.26 -5.88 9.78 -38.48 -0.38 -6.26 15 9 C 0.13 3.13 7.25 -39.73 -0.29 2.84 15 10 F -0.16 -3.84 17.25 2.25 0.04 -3.80 15 11 C -0.21 -5.56 8.65 -38.84 -0.34 -5.89 15 12 C 0.16 4.29 5.59 -106.57 -0.60 3.69 15 13 C -0.45 -11.31 8.82 -37.94 -0.33 -11.64 15 14 H 0.09 2.12 7.75 -52.49 -0.41 1.72 15 15 C 0.08 1.83 5.12 -17.33 -0.09 1.74 15 16 N -0.77 -19.16 10.98 55.55 0.61 -18.55 15 17 Si 0.91 17.79 29.60 -169.99 -5.03 12.76 15 18 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 19 H -0.27 -5.21 7.11 56.52 0.40 -4.80 15 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 21 H 0.06 0.89 8.14 -51.92 -0.42 0.47 15 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 15 24 H 0.06 0.83 8.09 -51.93 -0.42 0.41 15 25 H 0.07 1.06 7.81 -51.93 -0.41 0.65 15 26 H 0.15 2.18 8.06 -52.49 -0.42 1.76 15 27 H 0.10 2.15 7.78 -52.49 -0.41 1.74 15 28 H 0.13 3.57 6.16 -52.48 -0.32 3.25 15 29 H 0.29 6.41 8.30 -40.82 -0.34 6.07 15 LS Contribution 269.83 15.07 4.07 4.07 Total: -1.00 -26.51 269.83 -8.48 -34.99 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -2.79 Total: 2.43 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: -2.93 Total: -30.44 kcal Atomic # 7 Polarization: -19.16 SS G_CDS: 0.61 Total: -18.55 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.45 Total: -1.45 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.51 -8.48 -34.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313917.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.600 kcal (2) G-P(sol) polarization free energy of solvation -26.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds