Wall clock time and date at job start Mon Mar 30 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46976 * 2 1 4 4 C 1.31871 * 122.55359 * 264.96858 * 3 2 1 5 5 S 1.75308 * 111.33606 * 180.02562 * 4 3 2 6 6 C 1.75906 * 92.17598 * 0.02562 * 5 4 3 7 7 C 1.39420 * 109.76012 * 0.02562 * 6 5 4 8 8 C 1.41358 * 119.00943 * 179.97438 * 7 6 5 9 9 C 1.38017 * 120.87995 * 0.02562 * 8 7 6 10 10 F 1.35098 * 119.64392 * 179.97438 * 9 8 7 11 11 C 1.38064 * 120.70941 * 359.97438 * 9 8 7 12 12 C 1.40381 * 119.86360 * 359.97438 * 11 9 8 13 13 C 1.40926 * 120.09159 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00096 * 205.03593 * 13 12 11 15 15 C 1.39917 * 119.99753 * 25.03903 * 13 12 11 16 16 N 1.30868 * 120.00473 * 17.95759 * 15 13 12 17 17 Si 1.86803 * 119.99581 * 197.94998 * 15 13 12 18 18 H 1.48496 * 109.46850 * 94.69389 * 17 15 13 19 19 H 1.48509 * 109.46880 * 214.68863 * 17 15 13 20 20 H 1.48494 * 109.47509 * 334.68993 * 17 15 13 21 21 H 1.09007 * 109.47443 * 300.00625 * 1 2 3 22 22 H 1.09003 * 109.47015 * 60.00247 * 1 2 3 23 23 H 1.08999 * 109.47421 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47217 * 239.99759 * 2 1 3 25 25 H 1.08999 * 109.46537 * 119.99649 * 2 1 3 26 26 H 1.07999 * 124.33576 * 359.97438 * 4 3 2 27 27 H 1.07995 * 119.55672 * 180.02562 * 8 7 6 28 28 H 1.08003 * 120.06640 * 180.27364 * 11 9 8 29 29 H 0.96995 * 120.00662 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0573 -1.1072 5 16 2.9063 3.6883 -0.7675 6 6 2.6716 3.4781 0.9631 7 6 2.1939 2.1940 1.2215 8 6 1.9364 1.8145 2.5586 9 6 2.1513 2.6956 3.5989 10 9 1.8963 2.3068 4.8674 11 6 2.6240 3.9701 3.3573 12 6 2.8910 4.3787 2.0410 13 6 3.3732 5.6786 1.7888 14 1 3.2044 6.1401 0.8270 15 6 4.0706 6.3715 2.7844 16 7 4.5817 5.7212 3.7986 17 14 4.2724 8.2248 2.6658 18 1 3.1965 8.8905 3.4433 19 1 5.5952 8.6150 3.2167 20 1 4.1859 8.6422 1.2433 21 1 -0.3634 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 2.3019 1.6285 -2.0967 27 1 1.5666 0.8218 2.7688 28 1 2.7927 4.6496 4.1796 29 1 5.0656 6.2015 4.4886 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396313917.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:39 Heat of formation + Delta-G solvation = -44.373748 kcal Electronic energy + Delta-G solvation = -15521.054999 eV Core-core repulsion = 12834.161609 eV Total energy + Delta-G solvation = -2686.893390 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.64057 -39.95830 -37.28856 -35.20836 -32.55228 -31.69292 -29.55570 -27.48373 -24.97479 -23.61219 -22.74938 -20.63609 -19.06773 -18.30712 -17.48674 -16.93544 -16.64217 -16.31350 -15.98943 -15.23412 -14.95939 -14.62639 -14.37600 -14.07652 -13.49662 -13.45998 -13.11890 -13.00016 -12.90452 -12.46546 -12.33697 -12.13232 -11.79068 -11.54506 -11.45352 -11.24762 -11.08029 -10.03883 -9.14654 -8.85306 -8.44635 -6.51979 0.15372 0.60447 1.01566 1.31784 1.36550 1.47696 1.50480 1.68269 2.12840 2.55092 3.36936 3.57766 4.02376 4.16676 4.35389 4.45975 4.59003 4.65336 4.81165 4.86150 4.99699 5.08985 5.10380 5.21891 5.32238 5.41371 5.53236 5.62037 5.72546 5.80933 6.08699 6.41244 6.65114 6.68002 8.13270 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024125 B = 0.008388 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.358721 B = 3337.479786 C = 4339.500452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.101 4.101 4 C -0.193 4.193 5 S 0.050 5.950 6 C -0.248 4.248 7 C -0.025 4.025 8 C -0.256 4.256 9 C 0.115 3.885 10 F -0.162 7.162 11 C -0.244 4.244 12 C 0.139 3.861 13 C -0.472 4.472 14 H 0.086 0.914 15 C 0.038 3.962 16 N -0.805 5.805 17 Si 0.987 3.013 18 H -0.260 1.260 19 H -0.263 1.263 20 H -0.253 1.253 21 H 0.037 0.963 22 H 0.057 0.943 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.195 0.805 27 H 0.126 0.874 28 H 0.117 0.883 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 -4.539 -6.804 8.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 C -0.114 4.114 4 C -0.326 4.326 5 S 0.314 5.686 6 C -0.363 4.363 7 C -0.033 4.033 8 C -0.278 4.278 9 C 0.094 3.906 10 F -0.141 7.141 11 C -0.268 4.268 12 C 0.134 3.866 13 C -0.500 4.500 14 H 0.104 0.896 15 C -0.181 4.181 16 N -0.429 5.429 17 Si 0.806 3.194 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.177 1.177 21 H 0.056 0.944 22 H 0.077 0.923 23 H 0.097 0.903 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.212 0.788 27 H 0.144 0.856 28 H 0.134 0.866 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.665 -3.341 -7.525 8.654 hybrid contribution -0.204 -0.289 1.686 1.723 sum -2.869 -3.630 -5.840 7.451 Atomic orbital electron populations 1.21699 0.94131 1.02439 1.01545 1.20291 0.96532 0.89614 1.03401 1.19916 1.03024 0.98431 0.90044 1.25169 1.07202 0.97472 1.02784 1.83410 1.71892 1.13995 0.99256 1.22980 1.17184 0.98558 0.97618 1.18964 0.98695 0.92273 0.93387 1.20131 1.17282 1.00335 0.90086 1.17511 1.00656 0.94467 0.77939 1.91335 1.92430 1.91703 1.38618 1.20948 1.11988 0.95641 0.98203 1.17011 0.88288 0.92222 0.89095 1.19799 1.30458 0.98928 1.00798 0.89596 1.26896 0.91994 1.06038 0.93137 1.69878 1.23073 1.40427 1.09515 0.85110 0.78990 0.74924 0.80364 1.18401 1.18736 1.17672 0.94420 0.92345 0.90275 0.88704 0.91468 0.78828 0.85569 0.86562 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.89 71.98 0.71 -2.62 15 2 C -0.06 -1.55 6.05 29.85 0.18 -1.37 15 3 C -0.10 -3.57 5.23 -18.82 -0.10 -3.67 15 4 C -0.19 -6.31 10.75 67.00 0.72 -5.59 15 5 S 0.05 2.01 22.82 -56.49 -1.29 0.72 15 6 C -0.25 -12.24 6.36 23.53 0.15 -12.09 15 7 C -0.03 -1.13 6.01 -20.36 -0.12 -1.26 15 8 C -0.26 -11.78 9.78 22.99 0.22 -11.56 15 9 C 0.11 5.80 7.25 22.18 0.16 5.96 15 10 F -0.16 -7.78 17.25 44.97 0.78 -7.01 15 11 C -0.24 -13.35 8.65 22.75 0.20 -13.15 15 12 C 0.14 7.57 5.59 -21.12 -0.12 7.45 15 13 C -0.47 -24.79 8.82 23.34 0.21 -24.59 15 14 H 0.09 4.35 7.75 -2.91 -0.02 4.33 15 15 C 0.04 1.84 5.12 85.24 0.44 2.27 15 16 N -0.81 -41.28 10.98 21.82 0.24 -41.04 15 17 Si 0.99 36.71 29.60 68.60 2.03 38.74 15 18 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 19 H -0.26 -9.24 7.11 99.48 0.71 -8.54 15 20 H -0.25 -9.15 7.11 99.48 0.71 -8.44 15 21 H 0.04 1.04 8.14 -2.38 -0.02 1.02 15 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 15 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 24 H 0.09 1.95 8.09 -2.39 -0.02 1.93 15 25 H 0.07 1.82 7.81 -2.39 -0.02 1.80 15 26 H 0.19 4.58 8.06 -2.91 -0.02 4.56 15 27 H 0.13 5.10 7.78 -2.91 -0.02 5.08 15 28 H 0.12 6.61 6.16 -2.91 -0.02 6.59 15 29 H 0.30 13.55 8.30 -92.71 -0.77 12.78 15 Total: -1.00 -59.19 269.83 5.57 -53.62 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.17 Total: 15.16 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 2.65 Total: -60.19 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.24 Total: -41.04 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 0.78 Total: -7.01 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.29 Total: 0.72 kcal Total: -59.19 5.57 -53.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396313917.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.244 kcal (2) G-P(sol) polarization free energy of solvation -59.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds