Wall clock time and date at job start Mon Mar 30 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46867 * 2 1 4 4 C 1.31711 * 124.24994 * 90.00423 * 3 2 1 5 5 C 1.45568 * 114.87851 * 179.97438 * 4 3 2 6 6 C 1.40010 * 111.80871 * 0.02562 * 5 4 3 7 7 C 1.40542 * 120.19229 * 180.02562 * 6 5 4 8 8 C 1.35656 * 120.91268 * 0.02562 * 7 6 5 9 9 C 1.41110 * 120.12877 * 359.97350 * 8 7 6 10 10 C 1.41167 * 120.09468 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00968 * 154.30492 * 10 9 8 12 12 C 1.39828 * 119.99501 * 334.30642 * 10 9 8 13 13 N 1.30944 * 119.99898 * 343.23079 * 12 10 9 14 14 Si 1.86797 * 120.00127 * 163.23203 * 12 10 9 15 15 H 1.48502 * 109.47113 * 59.99895 * 14 12 10 16 16 H 1.48496 * 109.47332 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47007 * 300.00112 * 14 12 10 18 18 C 1.40280 * 119.82537 * 0.04694 * 9 8 7 19 19 F 1.35089 * 120.03984 * 179.97438 * 18 9 8 20 20 S 1.75264 * 124.25850 * 269.70664 * 3 2 1 21 21 H 1.09004 * 109.46902 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46899 * 299.99488 * 1 2 3 23 23 H 1.08994 * 109.47262 * 59.99842 * 1 2 3 24 24 H 1.08994 * 109.47262 * 120.00158 * 2 1 3 25 25 H 1.08999 * 109.46899 * 240.00512 * 2 1 3 26 26 H 1.08001 * 122.56270 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.54513 * 179.97438 * 7 6 5 28 28 H 1.08000 * 119.94091 * 180.02562 * 8 7 6 29 29 H 0.97001 * 120.00043 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2794 2.1197 1.0887 5 6 2.7587 3.4736 0.8517 6 6 2.8590 3.7580 -0.5156 7 6 3.3060 5.0196 -0.9441 8 6 3.6472 5.9794 -0.0482 9 6 3.5560 5.7209 1.3360 10 6 3.9107 6.7204 2.2676 11 1 3.4786 6.7140 3.2574 12 6 4.8215 7.7188 1.9090 13 7 5.5880 7.5594 0.8593 14 14 4.9451 9.2800 2.9272 15 1 5.3231 8.9334 4.3208 16 1 5.9770 10.1727 2.3413 17 1 3.6328 9.9752 2.9285 18 6 3.1124 4.4677 1.7839 19 9 3.0240 4.2153 3.1081 20 16 2.3681 2.3486 -1.4486 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.1374 1.7189 2.0815 27 1 3.3798 5.2276 -2.0014 28 1 3.9884 6.9437 -0.3950 29 1 6.2201 8.2518 0.6106 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314111.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:56 Heat of formation + Delta-G solvation = -43.671636 kcal Electronic energy + Delta-G solvation = -15332.505374 eV Core-core repulsion = 12645.642430 eV Total energy + Delta-G solvation = -2686.862944 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.19641 -39.75967 -37.36677 -35.53608 -33.29634 -31.49119 -29.29460 -27.39747 -25.01305 -23.55655 -22.41468 -21.03430 -19.27769 -18.48945 -17.37735 -16.90319 -16.64187 -16.08158 -15.58550 -15.41630 -15.17609 -14.47729 -14.39637 -14.07619 -13.80350 -13.59143 -13.03917 -13.01080 -12.83692 -12.51066 -12.26998 -12.10886 -11.84373 -11.68781 -11.55835 -11.39565 -11.03122 -10.04985 -9.21598 -8.86550 -8.45213 -6.46537 0.04945 0.58877 0.83959 1.22883 1.36096 1.42632 1.49304 1.59799 2.15750 2.51127 3.36963 3.66630 3.96909 4.21677 4.26143 4.35616 4.44946 4.65506 4.67529 4.91155 4.94953 5.03669 5.07802 5.15259 5.22234 5.37086 5.46476 5.56921 5.67525 5.88639 5.98654 6.38332 6.65694 6.72323 8.16444 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.043399 B = 0.006064 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.027812 B = 4616.102946 C = 5119.140640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.148 4.148 5 C -0.076 4.076 6 C -0.233 4.233 7 C -0.082 4.082 8 C -0.124 4.124 9 C 0.066 3.934 10 C -0.484 4.484 11 H 0.075 0.925 12 C 0.040 3.960 13 N -0.811 5.811 14 Si 0.989 3.011 15 H -0.263 1.263 16 H -0.258 1.258 17 H -0.257 1.257 18 C -0.063 4.063 19 F -0.167 7.167 20 S 0.071 5.929 21 H 0.086 0.914 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.140 0.860 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 -7.213 -3.475 9.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C -0.259 4.259 4 C -0.178 4.178 5 C -0.083 4.083 6 C -0.347 4.347 7 C -0.104 4.104 8 C -0.145 4.145 9 C 0.062 3.938 10 C -0.512 4.512 11 H 0.093 0.907 12 C -0.177 4.177 13 N -0.436 5.436 14 Si 0.809 3.191 15 H -0.187 1.187 16 H -0.182 1.182 17 H -0.181 1.181 18 C -0.086 4.086 19 F -0.146 7.146 20 S 0.332 5.668 21 H 0.104 0.896 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.157 0.843 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.769 -7.476 -5.105 10.231 hybrid contribution 0.445 1.186 2.318 2.642 sum -4.324 -6.289 -2.786 8.125 Atomic orbital electron populations 1.21765 0.93303 1.03113 1.01951 1.20301 0.96997 0.87410 1.04422 1.24157 1.05122 1.01606 0.95002 1.20798 1.04858 0.92236 0.99953 1.19185 1.02319 0.94222 0.92622 1.22190 1.17084 1.00379 0.95051 1.20141 0.99774 0.91104 0.99393 1.20899 1.02234 0.99662 0.91665 1.17794 0.91247 0.90289 0.94500 1.19672 1.22833 1.08726 1.00014 0.90723 1.26791 0.92288 1.02176 0.96435 1.69838 1.15096 1.34587 1.24064 0.85135 0.79575 0.75772 0.78624 1.18702 1.18191 1.18117 1.17845 1.19789 0.95076 0.75899 1.91196 1.95487 1.94707 1.33198 1.83074 1.71982 1.03622 1.08116 0.89562 0.93288 0.92826 0.88918 0.89187 0.84276 0.85434 0.85279 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.89 71.98 0.71 -2.15 15 2 C -0.05 -1.19 6.37 29.85 0.19 -1.00 15 3 C -0.14 -4.76 5.62 24.99 0.14 -4.62 15 4 C -0.15 -5.90 10.16 23.46 0.24 -5.67 15 5 C -0.08 -3.70 6.03 -20.33 -0.12 -3.82 15 6 C -0.23 -10.55 6.51 23.26 0.15 -10.40 15 7 C -0.08 -3.78 9.98 22.23 0.22 -3.56 15 8 C -0.12 -6.35 8.59 22.38 0.19 -6.16 15 9 C 0.07 3.67 5.55 -21.36 -0.12 3.55 15 10 C -0.48 -26.55 8.74 23.37 0.20 -26.34 15 11 H 0.07 4.09 7.72 -2.91 -0.02 4.07 15 12 C 0.04 1.98 5.14 85.21 0.44 2.42 15 13 N -0.81 -40.42 10.96 21.81 0.24 -40.18 15 14 Si 0.99 37.10 29.59 68.60 2.03 39.13 15 15 H -0.26 -9.78 7.11 99.48 0.71 -9.08 15 16 H -0.26 -8.86 7.11 99.48 0.71 -8.15 15 17 H -0.26 -9.41 7.11 99.48 0.71 -8.71 15 18 C -0.06 -3.43 7.38 23.39 0.17 -3.26 15 19 F -0.17 -9.03 16.64 44.97 0.75 -8.28 15 20 S 0.07 2.49 23.20 -56.49 -1.31 1.18 15 21 H 0.09 1.24 8.14 -2.39 -0.02 1.22 15 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 15 23 H 0.05 1.11 8.14 -2.39 -0.02 1.09 15 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.14 5.14 8.06 -2.91 -0.02 5.11 15 27 H 0.13 5.04 8.06 -2.91 -0.02 5.01 15 28 H 0.13 6.61 6.19 -2.91 -0.02 6.59 15 29 H 0.30 13.15 8.30 -92.71 -0.77 12.38 15 Total: -1.00 -60.25 270.70 5.29 -54.95 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.17 Total: 14.21 kcal Atomic # 6 Polarization: -63.43 SS G_CDS: 2.42 Total: -61.01 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.24 Total: -40.18 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 0.75 Total: -8.28 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.31 Total: 1.18 kcal Total: -60.25 5.29 -54.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314111.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.283 kcal (2) G-P(sol) polarization free energy of solvation -60.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds