Wall clock time and date at job start Mon Mar 30 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50697 * 109.47409 * 2 1 4 4 C 1.37583 * 119.48163 * 99.99509 * 3 2 1 5 5 C 1.40335 * 120.17085 * 179.97438 * 4 3 2 6 6 C 1.40535 * 120.37118 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00040 * 154.28843 * 6 5 4 8 8 C 1.39954 * 120.00371 * 334.28074 * 6 5 4 9 9 N 1.30882 * 119.99425 * 343.29686 * 8 6 5 10 10 Si 1.86792 * 120.00353 * 163.29538 * 8 6 5 11 11 H 1.48497 * 109.47306 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47164 * 120.00031 * 10 8 6 13 13 H 1.48501 * 109.46963 * 240.00265 * 10 8 6 14 14 C 1.47913 * 119.25611 * 0.02562 * 5 4 3 15 15 C 1.40027 * 129.20658 * 179.70282 * 14 5 4 16 16 C 1.32698 * 115.80577 * 179.80426 * 15 14 5 17 17 S 1.75519 * 110.64587 * 0.46169 * 16 15 14 18 18 C 1.39589 * 118.08556 * 359.97438 * 14 5 4 19 19 C 1.38402 * 119.47799 * 279.97593 * 3 2 1 20 20 F 1.35101 * 119.30911 * 0.02562 * 19 3 2 21 21 H 1.09005 * 109.47549 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47319 * 300.00079 * 1 2 3 23 23 H 1.09005 * 109.47148 * 60.00438 * 1 2 3 24 24 H 1.09000 * 109.47377 * 239.99390 * 2 1 3 25 25 H 1.09001 * 109.46887 * 120.00004 * 2 1 3 26 26 H 1.08007 * 119.91331 * 359.96274 * 4 3 2 27 27 H 0.97003 * 119.99585 * 179.97438 * 9 8 6 28 28 H 1.08001 * 122.09577 * 359.97438 * 15 14 5 29 29 H 1.07995 * 124.67328 * 180.20691 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4540 1.9898 1.1795 5 6 2.9251 3.3116 1.1960 6 6 3.3564 3.8973 2.3985 7 1 4.0752 4.7031 2.3794 8 6 2.8544 3.4364 3.6209 9 7 1.7671 2.7083 3.6490 10 14 3.7360 3.8602 5.2122 11 1 4.9308 4.6889 4.9106 12 1 2.8186 4.6197 6.0993 13 1 4.1592 2.6095 5.8919 14 6 2.9615 4.0819 -0.0662 15 6 3.3806 5.3996 -0.2872 16 6 3.3036 5.8276 -1.5409 17 16 2.6632 4.5710 -2.5857 18 6 2.5214 3.4536 -1.2324 19 6 2.0626 2.1324 -1.1866 20 9 1.6400 1.5393 -2.3245 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 2.4223 1.4178 2.0951 27 1 1.4193 2.3886 4.4962 28 1 3.7463 6.0272 0.5120 29 1 3.5911 6.8146 -1.8719 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396314914.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:28 Heat of formation + Delta-G solvation = -28.601440 kcal Electronic energy + Delta-G solvation = -15734.763488 eV Core-core repulsion = 13048.554036 eV Total energy + Delta-G solvation = -2686.209451 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.49411 -38.09741 -35.03116 -34.26117 -31.59235 -29.57406 -27.66011 -25.20258 -23.32016 -22.08085 -20.60247 -19.25560 -17.62945 -16.78791 -15.64391 -15.07047 -14.94224 -14.43292 -13.89622 -13.52833 -13.21624 -13.08083 -12.66389 -12.27890 -11.89661 -11.85455 -11.64007 -11.43369 -11.09497 -10.95478 -10.87749 -10.49516 -10.29334 -9.86743 -9.80725 -9.62433 -9.29877 -8.25576 -7.37075 -7.14709 -6.78896 -4.57758 1.77042 2.46887 2.56186 2.88606 2.92690 2.94867 2.99987 3.45871 3.65387 4.21134 5.23675 5.57423 5.61591 5.79312 5.80933 6.02683 6.24889 6.30576 6.40000 6.43669 6.49377 6.69434 6.77206 6.81931 6.87830 7.13304 7.16635 7.54146 7.66122 7.73930 7.84485 8.22790 8.42990 8.56944 9.74440 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.009797 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.019006 B = 2857.220204 C = 4177.959520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 C -0.051 4.051 4 C -0.170 4.170 5 C 0.148 3.852 6 C -0.421 4.421 7 H 0.089 0.911 8 C 0.071 3.929 9 N -0.763 5.763 10 Si 0.917 3.083 11 H -0.256 1.256 12 H -0.270 1.270 13 H -0.267 1.267 14 C -0.177 4.177 15 C -0.059 4.059 16 C -0.272 4.272 17 S 0.016 5.984 18 C -0.098 4.098 19 C -0.032 4.032 20 F -0.167 7.167 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.131 0.869 27 H 0.289 0.711 28 H 0.128 0.872 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -0.480 -0.688 1.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.055 4.055 4 C -0.192 4.192 5 C 0.142 3.858 6 C -0.448 4.448 7 H 0.107 0.893 8 C -0.151 4.151 9 N -0.385 5.385 10 Si 0.741 3.259 11 H -0.179 1.179 12 H -0.195 1.195 13 H -0.192 1.192 14 C -0.183 4.183 15 C -0.088 4.088 16 C -0.405 4.405 17 S 0.276 5.724 18 C -0.214 4.214 19 C -0.059 4.059 20 F -0.146 7.146 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.149 0.851 27 H 0.100 0.900 28 H 0.145 0.855 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.280 -0.573 -2.106 2.200 hybrid contribution 0.475 0.295 1.973 2.051 sum 0.755 -0.278 -0.132 0.815 Atomic orbital electron populations 1.21673 0.95396 1.00451 1.02311 1.20361 0.95862 0.93545 1.01539 1.19284 0.99177 0.94961 0.92030 1.20809 1.07457 0.95010 0.95920 1.18458 0.87552 0.90206 0.89549 1.19668 1.19998 1.15276 0.89886 0.89304 1.26126 0.93813 0.93187 1.02013 1.69846 1.15130 1.23860 1.29685 0.86082 0.80485 0.79662 0.79713 1.17921 1.19501 1.19197 1.18975 1.11976 0.93835 0.93557 1.19693 0.98417 0.94909 0.95803 1.24587 1.16417 1.02786 0.96737 1.83567 1.70548 1.06160 1.12079 1.22238 1.06143 0.96386 0.96594 1.16052 1.16939 0.90829 0.82036 1.91271 1.89501 1.84110 1.49735 0.93429 0.92290 0.92874 0.92083 0.91526 0.85117 0.89967 0.85456 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.89 37.15 0.37 -2.10 15 2 C -0.08 -1.44 5.73 -27.89 -0.16 -1.60 15 3 C -0.05 -1.18 5.12 -104.80 -0.54 -1.71 15 4 C -0.17 -4.14 8.24 -39.03 -0.32 -4.46 15 5 C 0.15 3.71 5.75 -104.28 -0.60 3.11 15 6 C -0.42 -10.07 8.81 -38.07 -0.34 -10.41 15 7 H 0.09 2.02 7.54 -52.49 -0.40 1.62 15 8 C 0.07 1.58 5.15 -17.31 -0.09 1.49 15 9 N -0.76 -17.55 10.96 55.55 0.61 -16.94 15 10 Si 0.92 16.56 29.59 -169.99 -5.03 11.53 15 11 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 12 H -0.27 -4.83 7.11 56.52 0.40 -4.42 15 13 H -0.27 -4.75 7.11 56.52 0.40 -4.35 15 14 C -0.18 -4.33 6.02 -104.76 -0.63 -4.96 15 15 C -0.06 -1.27 9.76 -40.80 -0.40 -1.67 15 16 C -0.27 -5.37 11.11 28.85 0.32 -5.05 15 17 S 0.02 0.33 23.30 -107.50 -2.50 -2.17 15 18 C -0.10 -2.38 6.46 -38.44 -0.25 -2.62 15 19 C -0.03 -0.77 7.25 -38.89 -0.28 -1.06 15 20 F -0.17 -3.88 16.53 2.25 0.04 -3.84 15 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.06 1.11 7.88 -51.93 -0.41 0.70 15 25 H 0.07 1.18 7.96 -51.93 -0.41 0.77 15 26 H 0.13 3.17 6.13 -52.48 -0.32 2.85 15 27 H 0.29 5.94 8.30 -40.82 -0.34 5.60 15 28 H 0.13 2.51 7.74 -52.49 -0.41 2.10 15 29 H 0.15 2.40 8.06 -52.49 -0.42 1.98 15 LS Contribution 269.02 15.07 4.05 4.05 Total: -1.00 -25.76 269.02 -8.52 -34.28 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -2.77 Total: 4.12 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: -2.91 Total: -31.03 kcal Atomic # 7 Polarization: -17.55 SS G_CDS: 0.61 Total: -16.94 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.53 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -2.50 Total: -2.17 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -25.76 -8.52 -34.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314914.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.681 kcal (2) G-P(sol) polarization free energy of solvation -25.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds