Wall clock time and date at job start Mon Mar 30 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50697 * 109.47409 * 2 1 4 4 C 1.37583 * 119.48163 * 99.99509 * 3 2 1 5 5 C 1.40335 * 120.17085 * 179.97438 * 4 3 2 6 6 C 1.40535 * 120.37118 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00040 * 154.28843 * 6 5 4 8 8 C 1.39954 * 120.00371 * 334.28074 * 6 5 4 9 9 N 1.30882 * 119.99425 * 343.29686 * 8 6 5 10 10 Si 1.86792 * 120.00353 * 163.29538 * 8 6 5 11 11 H 1.48497 * 109.47306 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47164 * 120.00031 * 10 8 6 13 13 H 1.48501 * 109.46963 * 240.00265 * 10 8 6 14 14 C 1.47913 * 119.25611 * 0.02562 * 5 4 3 15 15 C 1.40027 * 129.20658 * 179.70282 * 14 5 4 16 16 C 1.32698 * 115.80577 * 179.80426 * 15 14 5 17 17 S 1.75519 * 110.64587 * 0.46169 * 16 15 14 18 18 C 1.39589 * 118.08556 * 359.97438 * 14 5 4 19 19 C 1.38402 * 119.47799 * 279.97593 * 3 2 1 20 20 F 1.35101 * 119.30911 * 0.02562 * 19 3 2 21 21 H 1.09005 * 109.47549 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47319 * 300.00079 * 1 2 3 23 23 H 1.09005 * 109.47148 * 60.00438 * 1 2 3 24 24 H 1.09000 * 109.47377 * 239.99390 * 2 1 3 25 25 H 1.09001 * 109.46887 * 120.00004 * 2 1 3 26 26 H 1.08007 * 119.91331 * 359.96274 * 4 3 2 27 27 H 0.97003 * 119.99585 * 179.97438 * 9 8 6 28 28 H 1.08001 * 122.09577 * 359.97438 * 15 14 5 29 29 H 1.07995 * 124.67328 * 180.20691 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4540 1.9898 1.1795 5 6 2.9251 3.3116 1.1960 6 6 3.3564 3.8973 2.3985 7 1 4.0752 4.7031 2.3794 8 6 2.8544 3.4364 3.6209 9 7 1.7671 2.7083 3.6490 10 14 3.7360 3.8602 5.2122 11 1 4.9308 4.6889 4.9106 12 1 2.8186 4.6197 6.0993 13 1 4.1592 2.6095 5.8919 14 6 2.9615 4.0819 -0.0662 15 6 3.3806 5.3996 -0.2872 16 6 3.3036 5.8276 -1.5409 17 16 2.6632 4.5710 -2.5857 18 6 2.5214 3.4536 -1.2324 19 6 2.0626 2.1324 -1.1866 20 9 1.6400 1.5393 -2.3245 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 2.4223 1.4178 2.0951 27 1 1.4193 2.3886 4.4962 28 1 3.7463 6.0272 0.5120 29 1 3.5911 6.8146 -1.8719 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396314914.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:28 Heat of formation + Delta-G solvation = -39.543464 kcal Electronic energy + Delta-G solvation = -15735.237969 eV Core-core repulsion = 13048.554036 eV Total energy + Delta-G solvation = -2686.683933 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.31553 -39.83860 -36.70308 -35.96065 -33.20635 -31.34781 -29.33005 -26.96645 -24.94122 -23.79338 -22.27912 -20.98697 -19.35026 -18.55236 -17.36985 -16.70725 -16.66849 -16.22014 -15.52987 -15.14080 -14.85681 -14.66208 -14.27083 -13.99393 -13.57067 -13.50104 -13.20693 -12.95632 -12.80618 -12.54918 -12.42345 -12.02578 -11.85419 -11.54119 -11.48983 -11.31448 -11.00102 -10.01789 -9.11159 -8.84552 -8.52386 -6.38323 0.05933 0.68654 0.84239 1.30814 1.40431 1.47138 1.56680 1.73289 2.14769 2.49840 3.43812 3.88396 4.00440 4.22050 4.25760 4.53377 4.59024 4.71391 4.82852 4.87826 4.95082 5.03756 5.10394 5.17921 5.35651 5.40998 5.45376 5.79583 5.89170 5.92563 6.07214 6.44868 6.65020 6.77851 8.09687 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.009797 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.019006 B = 2857.220204 C = 4177.959520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C -0.055 4.055 4 C -0.193 4.193 5 C 0.119 3.881 6 C -0.444 4.444 7 H 0.093 0.907 8 C 0.036 3.964 9 N -0.790 5.790 10 Si 0.991 3.009 11 H -0.254 1.254 12 H -0.263 1.263 13 H -0.261 1.261 14 C -0.197 4.197 15 C -0.084 4.084 16 C -0.247 4.247 17 S 0.041 5.959 18 C -0.130 4.130 19 C -0.058 4.058 20 F -0.166 7.166 21 H 0.082 0.918 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.124 0.876 27 H 0.299 0.701 28 H 0.143 0.857 29 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 0.220 -0.312 1.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.112 4.112 3 C -0.058 4.058 4 C -0.214 4.214 5 C 0.114 3.886 6 C -0.470 4.470 7 H 0.111 0.889 8 C -0.184 4.184 9 N -0.413 5.413 10 Si 0.810 3.190 11 H -0.177 1.177 12 H -0.188 1.188 13 H -0.185 1.185 14 C -0.204 4.204 15 C -0.113 4.113 16 C -0.380 4.380 17 S 0.302 5.698 18 C -0.246 4.246 19 C -0.084 4.084 20 F -0.146 7.146 21 H 0.100 0.900 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.142 0.858 27 H 0.111 0.889 28 H 0.160 0.840 29 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.696 0.116 -1.753 1.890 hybrid contribution 0.325 0.142 1.765 1.801 sum 1.021 0.258 0.012 1.053 Atomic orbital electron populations 1.21609 0.94062 1.02332 1.01060 1.20440 0.96938 0.91416 1.02450 1.19642 0.98140 0.96683 0.91342 1.20800 1.09295 0.95189 0.96149 1.18862 0.88276 0.90901 0.90571 1.19935 1.20565 1.15985 0.90559 0.88898 1.26972 0.94049 0.92615 1.04766 1.69872 1.16045 1.24127 1.31210 0.85003 0.79172 0.79554 0.75249 1.17679 1.18799 1.18496 1.19383 1.12266 0.95184 0.93562 1.19850 0.99956 0.94268 0.97230 1.25102 1.13413 1.03801 0.95643 1.83412 1.70034 1.05471 1.10862 1.22638 1.06562 0.97233 0.98176 1.16270 1.18246 0.91442 0.82461 1.91251 1.89597 1.84104 1.49626 0.89956 0.93566 0.94017 0.91221 0.90428 0.85805 0.88926 0.83963 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.89 71.98 0.71 -3.87 15 2 C -0.07 -2.85 5.73 29.84 0.17 -2.68 15 3 C -0.05 -2.58 5.12 -19.98 -0.10 -2.69 15 4 C -0.19 -9.67 8.24 22.63 0.19 -9.49 15 5 C 0.12 6.15 5.75 -19.64 -0.11 6.03 15 6 C -0.44 -21.52 8.81 23.25 0.20 -21.31 15 7 H 0.09 4.25 7.54 -2.91 -0.02 4.23 15 8 C 0.04 1.60 5.15 85.25 0.44 2.04 15 9 N -0.79 -36.66 10.96 21.83 0.24 -36.42 15 10 Si 0.99 33.25 29.59 68.60 2.03 35.28 15 11 H -0.25 -8.34 7.11 99.48 0.71 -7.63 15 12 H -0.26 -8.52 7.11 99.48 0.71 -7.81 15 13 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 14 C -0.20 -9.76 6.02 -19.95 -0.12 -9.88 15 15 C -0.08 -3.54 9.76 21.53 0.21 -3.33 15 16 C -0.25 -9.11 11.11 66.65 0.74 -8.37 15 17 S 0.04 1.67 23.30 -56.49 -1.32 0.36 15 18 C -0.13 -6.38 6.46 23.01 0.15 -6.23 15 19 C -0.06 -2.85 7.25 22.72 0.16 -2.68 15 20 F -0.17 -7.80 16.53 44.97 0.74 -7.06 15 21 H 0.08 2.23 8.14 -2.38 -0.02 2.21 15 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 15 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 15 24 H 0.07 2.50 7.88 -2.39 -0.02 2.48 15 25 H 0.08 2.74 7.96 -2.39 -0.02 2.72 15 26 H 0.12 6.23 6.13 -2.91 -0.02 6.21 15 27 H 0.30 12.26 8.30 -92.71 -0.77 11.50 15 28 H 0.14 5.45 7.74 -2.91 -0.02 5.43 15 29 H 0.19 5.32 8.06 -2.91 -0.02 5.29 15 Total: -1.00 -55.73 269.02 5.51 -50.22 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.17 Total: 20.06 kcal Atomic # 6 Polarization: -65.10 SS G_CDS: 2.64 Total: -62.46 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.24 Total: -36.42 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.74 Total: -7.06 kcal Atomic # 14 Polarization: 33.25 SS G_CDS: 2.03 Total: 35.28 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.32 Total: 0.36 kcal Total: -55.73 5.51 -50.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396314914.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.679 kcal (2) G-P(sol) polarization free energy of solvation -55.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds