Wall clock time and date at job start Mon Mar 30 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47311 * 2 1 4 4 C 1.36942 * 122.48786 * 90.02169 * 3 2 1 5 5 C 1.39945 * 124.83137 * 359.94527 * 4 3 2 6 6 H 1.07999 * 120.00048 * 359.97438 * 5 4 3 7 7 C 1.40176 * 119.99777 * 179.97438 * 5 4 3 8 8 N 1.30766 * 120.00349 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99964 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47118 * 90.00188 * 9 7 5 11 11 H 1.48499 * 109.47293 * 210.00191 * 9 7 5 12 12 H 1.48504 * 109.47104 * 330.00437 * 9 7 5 13 13 S 1.75462 * 110.33582 * 180.20996 * 4 3 2 14 14 C 1.75980 * 91.77939 * 359.70034 * 13 4 3 15 15 C 1.39802 * 122.48766 * 270.00304 * 3 2 1 16 16 C 1.41963 * 128.51745 * 0.02562 * 15 3 2 17 17 C 1.35922 * 120.51677 * 179.97438 * 16 15 3 18 18 C 1.38946 * 120.67344 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.20124 * 359.97438 * 18 17 16 20 20 F 1.35103 * 119.87800 * 179.97438 * 19 18 17 21 21 H 1.09004 * 109.47342 * 300.00121 * 1 2 3 22 22 H 1.08999 * 109.47106 * 60.00178 * 1 2 3 23 23 H 1.09000 * 109.47199 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46902 * 240.00035 * 2 1 3 25 25 H 1.08999 * 109.47106 * 119.99822 * 2 1 3 26 26 H 0.96996 * 119.99975 * 179.97438 * 8 7 5 27 27 H 1.07995 * 119.74149 * 359.97438 * 16 15 3 28 28 H 1.08001 * 119.66630 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.89715 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2780 2.1142 1.1551 5 6 2.0975 1.6056 2.4463 6 1 1.7392 0.5961 2.5839 7 6 2.3819 2.4065 3.5611 8 7 2.8152 3.6290 3.3945 9 14 2.1403 1.7280 5.2847 10 1 3.3956 1.0794 5.7417 11 1 1.7911 2.8367 6.2087 12 1 1.0422 0.7283 5.2737 13 16 2.8440 3.7334 0.7858 14 6 2.7441 3.4326 -0.9453 15 6 2.2826 2.1288 -1.1792 16 6 2.1281 1.6934 -2.5216 17 6 2.4218 2.5256 -3.5553 18 6 2.8788 3.8162 -3.3184 19 6 3.0394 4.2688 -2.0260 20 9 3.4846 5.5248 -1.8032 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.0116 4.1832 4.1659 27 1 1.7743 0.6930 -2.7229 28 1 2.2988 2.1802 -4.5712 29 1 3.1088 4.4667 -4.1492 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315056.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:51 Heat of formation + Delta-G solvation = -45.879118 kcal Electronic energy + Delta-G solvation = -15620.050941 eV Core-core repulsion = 12933.092273 eV Total energy + Delta-G solvation = -2686.958668 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.99970 -38.27482 -35.48095 -33.76433 -30.99872 -29.18326 -29.05698 -25.57864 -23.16398 -21.84711 -21.18733 -18.72487 -17.64627 -16.40990 -15.95110 -15.30014 -14.74277 -14.72015 -14.17145 -13.75109 -13.38451 -12.71685 -12.67908 -12.35185 -12.08913 -11.62762 -11.57341 -11.27267 -11.25856 -11.09761 -10.63269 -10.35566 -10.29792 -9.89153 -9.80559 -9.38805 -9.06220 -8.25221 -7.51825 -7.27441 -6.37905 -4.75757 1.92116 2.27586 2.74526 2.80073 2.86402 3.17412 3.42528 3.51689 3.77000 4.51720 4.92475 5.23919 5.70662 5.88425 6.01525 6.09062 6.16026 6.38244 6.45458 6.56850 6.64607 6.80715 6.83494 6.98795 7.01464 7.10111 7.17518 7.34876 7.50198 7.67063 7.84287 8.00169 8.23825 8.34988 9.55904 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025847 B = 0.008828 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.018376 B = 3170.854211 C = 4161.126825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.021 4.021 3 C -0.328 4.328 4 C 0.059 3.941 5 C -0.372 4.372 6 H 0.104 0.896 7 C 0.051 3.949 8 N -0.771 5.771 9 Si 0.938 3.062 10 H -0.262 1.262 11 H -0.271 1.271 12 H -0.255 1.255 13 S 0.154 5.846 14 C -0.309 4.309 15 C 0.048 3.952 16 C -0.160 4.160 17 C -0.086 4.086 18 C -0.237 4.237 19 C 0.157 3.843 20 F -0.154 7.154 21 H 0.052 0.948 22 H 0.044 0.956 23 H 0.034 0.966 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.303 0.697 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -2.392 -1.239 2.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.335 4.335 4 C -0.061 4.061 5 C -0.405 4.405 6 H 0.121 0.879 7 C -0.171 4.171 8 N -0.397 5.397 9 Si 0.761 3.239 10 H -0.187 1.187 11 H -0.195 1.195 12 H -0.179 1.179 13 S 0.416 5.584 14 C -0.424 4.424 15 C 0.040 3.960 16 C -0.180 4.180 17 C -0.107 4.107 18 C -0.259 4.259 19 C 0.133 3.867 20 F -0.133 7.133 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.705 -0.894 -0.212 1.158 hybrid contribution -0.390 -1.068 -0.211 1.156 sum -1.095 -1.962 -0.423 2.286 Atomic orbital electron populations 1.21755 0.97543 0.99066 1.01521 1.19552 0.93737 0.93138 0.99617 1.18256 1.26548 0.98775 0.89871 1.21351 0.94355 0.94472 0.95901 1.19408 1.32300 1.00407 0.88414 0.87868 1.26379 0.92640 0.94262 1.03808 1.68614 1.28769 1.07278 1.35019 0.85753 0.80288 0.79691 0.78188 1.18695 1.19523 1.17851 1.85003 1.70366 1.13715 0.89283 1.23584 1.17452 0.99446 1.01928 1.17644 0.94250 0.90943 0.93188 1.20560 1.06639 0.99403 0.91377 1.20046 0.99562 0.93189 0.97887 1.20344 1.13410 0.98373 0.93732 1.16943 0.98652 0.78298 0.92778 1.91389 1.87102 1.39004 1.95798 0.92898 0.93682 0.94650 0.93963 0.92912 0.88347 0.87517 0.87268 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.89 37.16 0.37 -2.21 15 2 C -0.02 -0.42 5.65 -27.88 -0.16 -0.58 15 3 C -0.33 -7.80 5.20 -104.51 -0.54 -8.34 15 4 C 0.06 1.48 6.11 -39.41 -0.24 1.23 15 5 C -0.37 -8.74 8.83 -38.22 -0.34 -9.08 15 6 H 0.10 2.28 6.67 -52.49 -0.35 1.93 15 7 C 0.05 1.13 5.50 -17.28 -0.10 1.04 15 8 N -0.77 -17.69 10.58 55.56 0.59 -17.10 15 9 Si 0.94 16.39 29.56 -169.99 -5.03 11.36 15 10 H -0.26 -4.54 7.11 56.52 0.40 -4.14 15 11 H -0.27 -4.63 7.11 56.52 0.40 -4.23 15 12 H -0.26 -4.39 7.11 56.52 0.40 -3.98 15 13 S 0.15 3.85 20.13 -107.50 -2.16 1.69 15 14 C -0.31 -7.63 6.45 -38.23 -0.25 -7.87 15 15 C 0.05 1.15 5.84 -107.12 -0.63 0.52 15 16 C -0.16 -3.34 9.63 -38.99 -0.38 -3.71 15 17 C -0.09 -1.65 9.94 -40.15 -0.40 -2.05 15 18 C -0.24 -4.81 10.02 -39.45 -0.40 -5.21 15 19 C 0.16 3.61 7.32 -39.13 -0.29 3.32 15 20 F -0.15 -3.48 17.26 2.25 0.04 -3.44 15 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 24 H 0.04 0.80 7.33 -51.93 -0.38 0.42 15 25 H 0.05 1.05 6.89 -51.93 -0.36 0.69 15 26 H 0.30 6.22 8.29 -40.82 -0.34 5.88 15 27 H 0.11 2.00 7.40 -52.49 -0.39 1.61 15 28 H 0.11 1.70 8.06 -52.49 -0.42 1.27 15 29 H 0.11 1.99 8.06 -52.49 -0.42 1.56 15 LS Contribution 266.36 15.07 4.01 4.01 Total: -1.00 -25.70 266.36 -8.61 -34.31 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -2.72 Total: 2.12 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: -3.33 Total: -32.95 kcal Atomic # 7 Polarization: -17.69 SS G_CDS: 0.59 Total: -17.10 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.44 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.03 Total: 11.36 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -2.16 Total: 1.69 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -25.70 -8.61 -34.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315056.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.573 kcal (2) G-P(sol) polarization free energy of solvation -25.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds