Wall clock time and date at job start Mon Mar 30 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47311 * 2 1 4 4 C 1.36942 * 122.48786 * 90.02169 * 3 2 1 5 5 C 1.39945 * 124.83137 * 359.94527 * 4 3 2 6 6 H 1.07999 * 120.00048 * 359.97438 * 5 4 3 7 7 C 1.40176 * 119.99777 * 179.97438 * 5 4 3 8 8 N 1.30766 * 120.00349 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99964 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47118 * 90.00188 * 9 7 5 11 11 H 1.48499 * 109.47293 * 210.00191 * 9 7 5 12 12 H 1.48504 * 109.47104 * 330.00437 * 9 7 5 13 13 S 1.75462 * 110.33582 * 180.20996 * 4 3 2 14 14 C 1.75980 * 91.77939 * 359.70034 * 13 4 3 15 15 C 1.39802 * 122.48766 * 270.00304 * 3 2 1 16 16 C 1.41963 * 128.51745 * 0.02562 * 15 3 2 17 17 C 1.35922 * 120.51677 * 179.97438 * 16 15 3 18 18 C 1.38946 * 120.67344 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.20124 * 359.97438 * 18 17 16 20 20 F 1.35103 * 119.87800 * 179.97438 * 19 18 17 21 21 H 1.09004 * 109.47342 * 300.00121 * 1 2 3 22 22 H 1.08999 * 109.47106 * 60.00178 * 1 2 3 23 23 H 1.09000 * 109.47199 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46902 * 240.00035 * 2 1 3 25 25 H 1.08999 * 109.47106 * 119.99822 * 2 1 3 26 26 H 0.96996 * 119.99975 * 179.97438 * 8 7 5 27 27 H 1.07995 * 119.74149 * 359.97438 * 16 15 3 28 28 H 1.08001 * 119.66630 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.89715 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2780 2.1142 1.1551 5 6 2.0975 1.6056 2.4463 6 1 1.7392 0.5961 2.5839 7 6 2.3819 2.4065 3.5611 8 7 2.8152 3.6290 3.3945 9 14 2.1403 1.7280 5.2847 10 1 3.3956 1.0794 5.7417 11 1 1.7911 2.8367 6.2087 12 1 1.0422 0.7283 5.2737 13 16 2.8440 3.7334 0.7858 14 6 2.7441 3.4326 -0.9453 15 6 2.2826 2.1288 -1.1792 16 6 2.1281 1.6934 -2.5216 17 6 2.4218 2.5256 -3.5553 18 6 2.8788 3.8162 -3.3184 19 6 3.0394 4.2688 -2.0260 20 9 3.4846 5.5248 -1.8032 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.0116 4.1832 4.1659 27 1 1.7743 0.6930 -2.7229 28 1 2.2988 2.1802 -4.5712 29 1 3.1088 4.4667 -4.1492 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396315056.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:51 Heat of formation + Delta-G solvation = -56.936508 kcal Electronic energy + Delta-G solvation = -15620.530425 eV Core-core repulsion = 12933.092273 eV Total energy + Delta-G solvation = -2687.438152 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.75050 -39.96090 -37.15947 -35.43445 -32.59225 -30.88260 -30.74557 -27.27340 -24.79386 -23.49794 -22.85861 -20.42759 -19.39705 -18.12485 -17.60876 -16.98546 -16.49985 -16.32332 -15.84785 -15.33655 -14.97836 -14.34766 -14.28509 -13.97138 -13.73339 -13.20625 -13.12835 -12.90184 -12.83431 -12.66037 -12.05172 -11.96734 -11.88307 -11.54984 -11.40383 -11.04064 -10.86813 -9.99164 -9.27263 -8.93448 -8.22507 -6.51673 0.21347 0.57569 1.29030 1.33857 1.38035 1.53568 1.81213 1.89022 2.12224 2.82091 3.20300 3.55832 4.19554 4.28426 4.47264 4.60390 4.61639 4.79993 4.86162 4.89939 5.11843 5.18365 5.25350 5.36917 5.39683 5.50017 5.59128 5.70363 5.78462 5.97468 6.13227 6.31595 6.53151 6.58392 7.93290 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025847 B = 0.008828 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.018376 B = 3170.854211 C = 4161.126825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.019 4.019 3 C -0.346 4.346 4 C 0.034 3.966 5 C -0.395 4.395 6 H 0.112 0.888 7 C 0.014 3.986 8 N -0.801 5.801 9 Si 1.011 2.989 10 H -0.257 1.257 11 H -0.264 1.264 12 H -0.248 1.248 13 S 0.105 5.895 14 C -0.337 4.337 15 C 0.025 3.975 16 C -0.163 4.163 17 C -0.077 4.077 18 C -0.224 4.224 19 C 0.127 3.873 20 F -0.159 7.159 21 H 0.035 0.965 22 H 0.041 0.959 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.311 0.689 27 H 0.131 0.869 28 H 0.158 0.842 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.838 -3.904 -2.228 4.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.058 4.058 3 C -0.352 4.352 4 C -0.086 4.086 5 C -0.428 4.428 6 H 0.130 0.870 7 C -0.205 4.205 8 N -0.427 5.427 9 Si 0.829 3.171 10 H -0.181 1.181 11 H -0.188 1.188 12 H -0.171 1.171 13 S 0.366 5.634 14 C -0.452 4.452 15 C 0.017 3.983 16 C -0.182 4.182 17 C -0.097 4.097 18 C -0.245 4.245 19 C 0.104 3.896 20 F -0.138 7.138 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.125 0.875 27 H 0.149 0.851 28 H 0.175 0.825 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.322 -2.402 -1.223 3.002 hybrid contribution -0.176 -0.566 -0.069 0.597 sum -1.498 -2.968 -1.293 3.567 Atomic orbital electron populations 1.21653 0.96019 1.00800 1.00514 1.19589 0.94980 0.91143 1.00101 1.18709 1.26545 1.00327 0.89605 1.21693 0.95513 0.94134 0.97219 1.19730 1.33193 1.01157 0.88714 0.86987 1.27360 0.91517 0.94141 1.07469 1.68684 1.29048 1.08460 1.36472 0.84715 0.80397 0.79137 0.72889 1.18123 1.18824 1.17118 1.84911 1.71718 1.15512 0.91211 1.23796 1.19115 1.00683 1.01601 1.18038 0.94780 0.90766 0.94756 1.20913 1.06100 1.00858 0.90379 1.20579 0.97240 0.92111 0.99771 1.20836 1.11096 0.99298 0.93256 1.17334 1.00179 0.78364 0.93726 1.91365 1.87306 1.39204 1.95944 0.94545 0.94031 0.91445 0.92622 0.93131 0.87549 0.85126 0.82452 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.89 71.98 0.71 -3.92 15 2 C -0.02 -0.74 5.65 29.85 0.17 -0.57 15 3 C -0.35 -16.60 5.20 -19.79 -0.10 -16.70 15 4 C 0.03 1.75 6.11 22.38 0.14 1.88 15 5 C -0.39 -18.99 8.83 23.15 0.20 -18.79 15 6 H 0.11 5.00 6.67 -2.91 -0.02 4.98 15 7 C 0.01 0.63 5.50 85.32 0.47 1.10 15 8 N -0.80 -37.88 10.58 21.87 0.23 -37.65 15 9 Si 1.01 33.16 29.56 68.60 2.03 35.19 15 10 H -0.26 -8.16 7.11 99.48 0.71 -7.46 15 11 H -0.26 -8.30 7.11 99.48 0.71 -7.60 15 12 H -0.25 -7.79 7.11 99.48 0.71 -7.09 15 13 S 0.10 5.51 20.13 -56.49 -1.14 4.37 15 14 C -0.34 -16.99 6.45 23.14 0.15 -16.84 15 15 C 0.02 1.18 5.84 -21.48 -0.13 1.05 15 16 C -0.16 -6.39 9.63 22.65 0.22 -6.17 15 17 C -0.08 -2.65 9.94 21.90 0.22 -2.43 15 18 C -0.22 -8.48 10.02 22.35 0.22 -8.25 15 19 C 0.13 5.85 7.32 22.56 0.17 6.01 15 20 F -0.16 -7.29 17.26 44.97 0.78 -6.51 15 21 H 0.04 1.36 8.14 -2.38 -0.02 1.34 15 22 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.06 2.00 7.33 -2.39 -0.02 1.99 15 25 H 0.05 1.98 6.89 -2.39 -0.02 1.96 15 26 H 0.31 13.09 8.29 -92.71 -0.77 12.33 15 27 H 0.13 4.43 7.40 -2.91 -0.02 4.40 15 28 H 0.16 3.93 8.06 -2.91 -0.02 3.91 15 29 H 0.15 4.51 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -57.16 266.36 5.51 -51.65 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.17 Total: 16.57 kcal Atomic # 6 Polarization: -66.06 SS G_CDS: 2.44 Total: -63.63 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.23 Total: -37.65 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.78 Total: -6.51 kcal Atomic # 14 Polarization: 33.16 SS G_CDS: 2.03 Total: 35.19 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.14 Total: 4.37 kcal Total: -57.16 5.51 -51.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315056.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.286 kcal (2) G-P(sol) polarization free energy of solvation -57.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds