Wall clock time and date at job start Mon Mar 30 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47399 * 2 1 4 4 C 1.40498 * 120.00872 * 89.99843 * 3 2 1 5 5 C 1.45673 * 129.18788 * 0.03236 * 4 3 2 6 6 F 1.35098 * 122.57919 * 359.97438 * 5 4 3 7 7 C 1.31781 * 114.84971 * 179.97438 * 5 4 3 8 8 S 1.75255 * 111.52488 * 359.97438 * 7 5 4 9 9 C 1.40164 * 119.04344 * 180.02562 * 4 3 2 10 10 C 1.40485 * 120.15686 * 359.97438 * 9 4 3 11 11 C 1.35669 * 120.82657 * 359.97438 * 10 9 4 12 12 C 1.39923 * 120.00540 * 269.97519 * 3 2 1 13 13 C 1.41264 * 120.06421 * 359.97438 * 12 3 2 14 14 H 1.07998 * 119.99868 * 25.64541 * 13 12 3 15 15 C 1.39845 * 119.99930 * 205.65007 * 13 12 3 16 16 N 1.30897 * 120.00362 * 15.44391 * 15 13 12 17 17 Si 1.86805 * 119.99775 * 195.44424 * 15 13 12 18 18 H 1.48494 * 109.47237 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47006 * 119.99916 * 17 15 13 20 20 H 1.48501 * 109.47113 * 239.99958 * 17 15 13 21 21 H 1.08993 * 109.47560 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47465 * 300.00381 * 1 2 3 23 23 H 1.09000 * 109.46885 * 60.00009 * 1 2 3 24 24 H 1.09003 * 109.46777 * 239.99892 * 2 1 3 25 25 H 1.09000 * 109.46885 * 119.99991 * 2 1 3 26 26 H 1.08004 * 124.24117 * 179.97438 * 7 5 4 27 27 H 1.08001 * 119.58451 * 180.02562 * 10 9 4 28 28 H 1.07995 * 119.94332 * 179.73176 * 11 10 9 29 29 H 0.97005 * 120.00165 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2666 2.0833 1.2166 5 6 2.0947 1.5953 2.5784 6 9 1.6540 0.3484 2.8541 7 6 2.4021 2.4637 3.5208 8 16 2.9409 3.9865 2.8410 9 6 2.7333 3.4047 1.1930 10 6 2.9618 4.0507 -0.0334 11 6 2.7368 3.4112 -1.2085 12 6 2.2661 2.0803 -1.2117 13 6 2.0322 1.4155 -2.4359 14 1 1.3175 0.6072 -2.4835 15 6 2.7261 1.8038 -3.5863 16 7 3.7917 2.5572 -3.4848 17 14 2.1323 1.2474 -5.2678 18 1 0.9162 0.4098 -5.1110 19 1 1.8115 2.4362 -6.0978 20 1 3.1975 0.4533 -5.9311 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.3309 2.2622 4.5795 27 1 3.3218 5.0689 -0.0408 28 1 2.9131 3.9229 -2.1431 29 1 4.2733 2.8262 -4.2828 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315109.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:46 Heat of formation + Delta-G solvation = -25.776746 kcal Electronic energy + Delta-G solvation = -15841.234729 eV Core-core repulsion = 13155.147765 eV Total energy + Delta-G solvation = -2686.086963 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.25575 -38.34424 -34.83473 -33.14327 -32.76047 -29.14252 -27.93796 -25.53685 -22.87609 -22.37035 -20.05444 -19.96445 -17.43343 -16.46410 -15.79269 -15.39174 -15.11480 -14.99767 -14.21087 -13.64740 -13.25994 -12.77475 -12.59629 -12.46035 -12.00872 -11.66628 -11.51150 -11.31102 -11.17378 -10.91488 -10.80963 -10.40200 -10.30326 -9.92887 -9.66535 -9.35060 -9.25164 -8.25110 -7.51885 -7.01706 -6.71604 -4.50950 1.64018 2.33299 2.48657 2.83067 2.98904 3.00541 3.04813 3.20261 3.80485 4.36829 4.95451 5.36843 5.41768 5.82699 5.98998 6.07890 6.21671 6.31800 6.46382 6.59790 6.65182 6.71426 6.81421 6.91069 7.06784 7.10723 7.42115 7.46225 7.55651 7.79264 8.00780 8.35834 8.66429 8.70524 9.99514 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.028502 B = 0.008060 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.164461 B = 3473.312524 C = 4302.425102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.162 4.162 4 C -0.064 4.064 5 C 0.105 3.895 6 F -0.134 7.134 7 C -0.262 4.262 8 S 0.047 5.953 9 C -0.213 4.213 10 C -0.084 4.084 11 C -0.111 4.111 12 C 0.116 3.884 13 C -0.446 4.446 14 H 0.087 0.913 15 C 0.074 3.926 16 N -0.791 5.791 17 Si 0.911 3.089 18 H -0.258 1.258 19 H -0.271 1.271 20 H -0.273 1.273 21 H 0.040 0.960 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.159 0.841 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 0.120 4.019 4.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.167 4.167 4 C -0.070 4.070 5 C 0.072 3.928 6 F -0.112 7.112 7 C -0.396 4.396 8 S 0.306 5.694 9 C -0.328 4.328 10 C -0.106 4.106 11 C -0.132 4.132 12 C 0.112 3.888 13 C -0.475 4.475 14 H 0.105 0.895 15 C -0.145 4.145 16 N -0.416 5.416 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.198 1.198 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.177 0.823 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.424 1.501 4.562 5.009 hybrid contribution -0.595 -1.669 -1.160 2.117 sum -2.018 -0.167 3.402 3.959 Atomic orbital electron populations 1.21679 0.96723 0.99754 1.01363 1.20193 0.94617 0.94086 1.01341 1.19483 1.11548 0.95514 0.90170 1.18538 1.03959 0.93706 0.90748 1.17568 1.01852 0.80504 0.92883 1.91400 1.87172 1.38612 1.94060 1.24428 1.13673 0.99183 1.02366 1.83317 1.74076 1.13249 0.98728 1.21684 1.17681 0.97978 0.95437 1.19801 1.02344 0.98192 0.90284 1.21183 1.00728 0.94795 0.96481 1.17314 0.88887 0.90976 0.91617 1.19649 1.20204 1.15682 0.91949 0.89494 1.25979 0.93322 0.93442 1.01722 1.69818 1.12376 1.27493 1.31932 0.86198 0.80045 0.79485 0.80759 1.18185 1.19577 1.19841 0.94079 0.93833 0.92635 0.91221 0.92910 0.82292 0.88333 0.85116 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.85 37.16 0.37 -2.23 15 2 C -0.06 -1.37 5.06 -27.88 -0.14 -1.51 15 3 C -0.16 -3.86 5.26 -103.14 -0.54 -4.41 15 4 C -0.06 -1.47 5.97 -105.36 -0.63 -2.10 15 5 C 0.11 2.19 7.41 -38.51 -0.29 1.90 15 6 F -0.13 -2.68 15.20 2.25 0.03 -2.64 15 7 C -0.26 -4.80 11.00 28.84 0.32 -4.48 15 8 S 0.05 0.88 23.23 -107.50 -2.50 -1.62 15 9 C -0.21 -4.77 6.51 -38.01 -0.25 -5.02 15 10 C -0.08 -1.89 9.99 -39.65 -0.40 -2.28 15 11 C -0.11 -2.69 8.59 -39.39 -0.34 -3.03 15 12 C 0.12 2.89 5.55 -107.01 -0.59 2.29 15 13 C -0.45 -10.87 8.10 -37.83 -0.31 -11.17 15 14 H 0.09 2.05 6.47 -52.49 -0.34 1.71 15 15 C 0.07 1.71 5.17 -17.35 -0.09 1.62 15 16 N -0.79 -18.99 10.88 55.54 0.60 -18.38 15 17 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 15 18 H -0.26 -4.92 7.11 56.52 0.40 -4.52 15 19 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 20 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 21 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.05 1.06 7.84 -51.93 -0.41 0.66 15 24 H 0.07 1.48 6.73 -51.93 -0.35 1.13 15 25 H 0.05 1.09 6.23 -51.93 -0.32 0.76 15 26 H 0.16 2.39 8.06 -52.48 -0.42 1.97 15 27 H 0.10 1.98 8.06 -52.49 -0.42 1.55 15 28 H 0.13 3.20 6.14 -52.49 -0.32 2.88 15 29 H 0.28 6.17 8.30 -40.82 -0.34 5.83 15 LS Contribution 262.77 15.07 3.96 3.96 Total: -1.00 -25.20 262.77 -8.38 -33.58 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -2.57 Total: 3.08 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -2.89 Total: -30.42 kcal Atomic # 7 Polarization: -18.99 SS G_CDS: 0.60 Total: -18.38 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.03 Total: -2.64 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -25.20 -8.38 -33.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315109.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.800 kcal (2) G-P(sol) polarization free energy of solvation -25.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds