Wall clock time and date at job start Mon Mar 30 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47399 * 2 1 4 4 C 1.40498 * 120.00872 * 89.99843 * 3 2 1 5 5 C 1.45673 * 129.18788 * 0.03236 * 4 3 2 6 6 F 1.35098 * 122.57919 * 359.97438 * 5 4 3 7 7 C 1.31781 * 114.84971 * 179.97438 * 5 4 3 8 8 S 1.75255 * 111.52488 * 359.97438 * 7 5 4 9 9 C 1.40164 * 119.04344 * 180.02562 * 4 3 2 10 10 C 1.40485 * 120.15686 * 359.97438 * 9 4 3 11 11 C 1.35669 * 120.82657 * 359.97438 * 10 9 4 12 12 C 1.39923 * 120.00540 * 269.97519 * 3 2 1 13 13 C 1.41264 * 120.06421 * 359.97438 * 12 3 2 14 14 H 1.07998 * 119.99868 * 25.64541 * 13 12 3 15 15 C 1.39845 * 119.99930 * 205.65007 * 13 12 3 16 16 N 1.30897 * 120.00362 * 15.44391 * 15 13 12 17 17 Si 1.86805 * 119.99775 * 195.44424 * 15 13 12 18 18 H 1.48494 * 109.47237 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47006 * 119.99916 * 17 15 13 20 20 H 1.48501 * 109.47113 * 239.99958 * 17 15 13 21 21 H 1.08993 * 109.47560 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47465 * 300.00381 * 1 2 3 23 23 H 1.09000 * 109.46885 * 60.00009 * 1 2 3 24 24 H 1.09003 * 109.46777 * 239.99892 * 2 1 3 25 25 H 1.09000 * 109.46885 * 119.99991 * 2 1 3 26 26 H 1.08004 * 124.24117 * 179.97438 * 7 5 4 27 27 H 1.08001 * 119.58451 * 180.02562 * 10 9 4 28 28 H 1.07995 * 119.94332 * 179.73176 * 11 10 9 29 29 H 0.97005 * 120.00165 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2666 2.0833 1.2166 5 6 2.0947 1.5953 2.5784 6 9 1.6540 0.3484 2.8541 7 6 2.4021 2.4637 3.5208 8 16 2.9409 3.9865 2.8410 9 6 2.7333 3.4047 1.1930 10 6 2.9618 4.0507 -0.0334 11 6 2.7368 3.4112 -1.2085 12 6 2.2661 2.0803 -1.2117 13 6 2.0322 1.4155 -2.4359 14 1 1.3175 0.6072 -2.4835 15 6 2.7261 1.8038 -3.5863 16 7 3.7917 2.5572 -3.4848 17 14 2.1323 1.2474 -5.2678 18 1 0.9162 0.4098 -5.1110 19 1 1.8115 2.4362 -6.0978 20 1 3.1975 0.4533 -5.9311 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.3309 2.2622 4.5795 27 1 3.3218 5.0689 -0.0408 28 1 2.9131 3.9229 -2.1431 29 1 4.2733 2.8262 -4.2828 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396315109.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:46 Heat of formation + Delta-G solvation = -36.352279 kcal Electronic energy + Delta-G solvation = -15841.693318 eV Core-core repulsion = 13155.147765 eV Total energy + Delta-G solvation = -2686.545553 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.78815 -40.06287 -36.52410 -34.82258 -34.45829 -30.87266 -29.59173 -27.30685 -24.51890 -24.05071 -21.74075 -21.63350 -19.17297 -18.08722 -17.38458 -17.06814 -16.77280 -16.57867 -15.87788 -15.27184 -14.85506 -14.37697 -14.25227 -14.13840 -13.65044 -13.26044 -13.16819 -12.93206 -12.75588 -12.51679 -12.43256 -12.02899 -11.90803 -11.59023 -11.35216 -11.04475 -10.96705 -9.92917 -9.25285 -8.74082 -8.34939 -6.32298 0.01443 0.74193 0.80529 1.19315 1.40497 1.43339 1.52520 1.55593 2.20253 2.61220 3.37052 3.56720 3.97056 4.18228 4.34871 4.48871 4.61949 4.71730 4.81502 4.93512 4.98784 5.11278 5.12675 5.18319 5.40999 5.45201 5.67924 5.72108 5.77579 6.00753 6.22772 6.54785 6.87271 6.90106 8.28508 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.028502 B = 0.008060 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.164461 B = 3473.312524 C = 4302.425102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C -0.184 4.184 4 C -0.081 4.081 5 C 0.074 3.926 6 F -0.133 7.133 7 C -0.238 4.238 8 S 0.108 5.892 9 C -0.241 4.241 10 C -0.086 4.086 11 C -0.134 4.134 12 C 0.089 3.911 13 C -0.472 4.472 14 H 0.086 0.914 15 C 0.037 3.963 16 N -0.822 5.822 17 Si 0.980 3.020 18 H -0.257 1.257 19 H -0.264 1.264 20 H -0.268 1.268 21 H 0.068 0.932 22 H 0.039 0.961 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.199 0.801 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 0.167 5.180 5.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.098 4.098 3 C -0.189 4.189 4 C -0.088 4.088 5 C 0.041 3.959 6 F -0.112 7.112 7 C -0.372 4.372 8 S 0.368 5.632 9 C -0.355 4.355 10 C -0.109 4.109 11 C -0.155 4.155 12 C 0.086 3.914 13 C -0.501 4.501 14 H 0.104 0.896 15 C -0.179 4.179 16 N -0.448 5.448 17 Si 0.801 3.199 18 H -0.180 1.180 19 H -0.189 1.189 20 H -0.193 1.193 21 H 0.087 0.913 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.216 0.784 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.738 1.559 5.739 6.196 hybrid contribution -0.449 -1.608 -1.337 2.139 sum -2.187 -0.049 4.402 4.915 Atomic orbital electron populations 1.21584 0.94998 1.01327 1.00657 1.20168 0.96085 0.92750 1.00843 1.19826 1.11917 0.96741 0.90404 1.18918 1.03677 0.94301 0.91859 1.17502 1.04664 0.81453 0.92306 1.91392 1.87416 1.38502 1.93883 1.24967 1.10062 0.98236 1.03962 1.83097 1.72838 1.12331 0.94927 1.22101 1.17287 0.98320 0.97782 1.20018 1.01639 0.99039 0.90162 1.21177 1.02422 0.95078 0.96861 1.17644 0.89669 0.91580 0.92529 1.19830 1.21056 1.16400 0.92804 0.89602 1.26751 0.92985 0.93255 1.04866 1.69863 1.13246 1.28428 1.33240 0.85166 0.79443 0.79125 0.76136 1.18012 1.18888 1.19323 0.91322 0.94149 0.93613 0.92187 0.92690 0.78359 0.86287 0.86230 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.85 71.98 0.71 -4.08 15 2 C -0.06 -2.61 5.06 29.85 0.15 -2.46 15 3 C -0.18 -8.95 5.26 -18.90 -0.10 -9.05 15 4 C -0.08 -3.74 5.97 -20.34 -0.12 -3.86 15 5 C 0.07 2.95 7.41 23.44 0.17 3.12 15 6 F -0.13 -5.12 15.20 44.97 0.68 -4.44 15 7 C -0.24 -7.86 11.00 67.07 0.74 -7.13 15 8 S 0.11 3.68 23.23 -56.49 -1.31 2.37 15 9 C -0.24 -10.56 6.51 23.29 0.15 -10.41 15 10 C -0.09 -3.92 9.99 22.22 0.22 -3.70 15 11 C -0.13 -6.75 8.59 22.39 0.19 -6.56 15 12 C 0.09 4.62 5.55 -21.41 -0.12 4.50 15 13 C -0.47 -23.77 8.10 23.40 0.19 -23.58 15 14 H 0.09 4.18 6.47 -2.91 -0.02 4.16 15 15 C 0.04 1.75 5.17 85.22 0.44 2.19 15 16 N -0.82 -40.48 10.88 21.81 0.24 -40.25 15 17 Si 0.98 36.12 29.59 68.60 2.03 38.15 15 18 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 19 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 20 H -0.27 -9.60 7.11 99.48 0.71 -8.89 15 21 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 23 H 0.04 1.77 7.84 -2.39 -0.02 1.75 15 24 H 0.06 2.63 6.73 -2.39 -0.02 2.61 15 25 H 0.05 2.27 6.23 -2.39 -0.01 2.26 15 26 H 0.20 4.93 8.06 -2.91 -0.02 4.91 15 27 H 0.12 4.73 8.06 -2.91 -0.02 4.70 15 28 H 0.12 6.13 6.14 -2.91 -0.02 6.11 15 29 H 0.29 12.89 8.30 -92.70 -0.77 12.12 15 Total: -1.00 -54.55 262.77 5.45 -49.10 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.18 Total: 16.08 kcal Atomic # 6 Polarization: -63.64 SS G_CDS: 2.63 Total: -61.01 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.24 Total: -40.25 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.68 Total: -4.44 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.31 Total: 2.37 kcal Total: -54.55 5.45 -49.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315109.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.750 kcal (2) G-P(sol) polarization free energy of solvation -54.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds