Wall clock time and date at job start Mon Mar 30 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.46965 * 2 1 4 4 S 1.75481 * 124.58812 * 270.57023 * 3 2 1 5 5 C 1.76046 * 91.56859 * 180.02562 * 4 3 2 6 6 C 1.38865 * 130.43414 * 179.40104 * 5 4 3 7 7 C 1.40381 * 119.96924 * 179.97438 * 6 5 4 8 8 C 1.40970 * 120.19945 * 179.97438 * 7 6 5 9 9 H 1.08007 * 120.00071 * 204.72995 * 8 7 6 10 10 C 1.39854 * 120.00401 * 24.73078 * 8 7 6 11 11 N 1.30897 * 119.99950 * 17.98372 * 10 8 7 12 12 Si 1.86807 * 120.00060 * 197.98830 * 10 8 7 13 13 H 1.48499 * 109.46780 * 89.99667 * 12 10 8 14 14 H 1.48495 * 109.46748 * 209.99487 * 12 10 8 15 15 H 1.48502 * 109.46886 * 329.99517 * 12 10 8 16 16 C 1.41275 * 119.59544 * 359.97438 * 7 6 5 17 17 C 1.35174 * 120.39204 * 0.03354 * 16 7 6 18 18 C 1.40374 * 109.40545 * 359.63357 * 5 4 3 19 19 C 1.32714 * 124.58327 * 90.00304 * 3 2 1 20 20 F 1.35104 * 122.08269 * 359.94263 * 19 3 2 21 21 H 1.08994 * 109.47609 * 59.99595 * 1 2 3 22 22 H 1.09001 * 109.46818 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47191 * 299.99645 * 1 2 3 24 24 H 1.08995 * 109.47169 * 240.00957 * 2 1 3 25 25 H 1.08994 * 109.47609 * 120.00404 * 2 1 3 26 26 H 1.07996 * 120.01769 * 359.92804 * 6 5 4 27 27 H 0.96997 * 120.00372 * 180.02562 * 11 10 8 28 28 H 1.08002 * 119.80077 * 180.02562 * 16 7 6 29 29 H 1.07999 * 119.56434 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 16 2.3507 2.3648 -1.4446 5 6 2.8525 3.7531 -0.4853 6 6 3.3032 5.0056 -0.8808 7 6 3.6493 5.9636 0.0852 8 6 4.1080 7.2364 -0.3109 9 1 4.7333 7.8156 0.3524 10 6 3.7533 7.7492 -1.5628 11 7 2.7394 7.2398 -2.2154 12 14 4.7267 9.1610 -2.3037 13 1 5.8432 8.6184 -3.1186 14 1 3.8355 9.9775 -3.1663 15 1 5.2750 10.0092 -1.2150 16 6 3.5352 5.6443 1.4566 17 6 3.0965 4.4248 1.8406 18 6 2.7474 3.4398 0.8790 19 6 2.2834 2.1310 1.0926 20 9 2.1040 1.6269 2.3332 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.3882 5.2424 -1.9311 27 1 2.4936 7.5951 -3.0838 28 1 3.8002 6.3789 2.2026 29 1 3.0148 4.1948 2.8927 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315277.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:16 Heat of formation + Delta-G solvation = -31.043784 kcal Electronic energy + Delta-G solvation = -15343.134331 eV Core-core repulsion = 12656.818972 eV Total energy + Delta-G solvation = -2686.315359 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.14648 -38.14526 -35.39927 -33.89158 -31.88357 -29.57893 -28.44925 -25.56257 -23.11235 -22.00971 -20.81294 -19.26217 -17.76012 -16.83822 -15.76812 -15.45124 -15.05115 -14.80271 -14.07239 -13.58686 -13.36393 -13.05714 -12.80680 -12.51334 -12.28191 -11.93929 -11.70748 -11.33622 -11.28717 -10.95912 -10.89326 -10.66883 -10.32863 -10.06033 -9.87372 -9.52250 -9.22766 -8.42816 -7.47101 -7.09029 -6.70857 -4.60986 1.69359 2.49513 2.67394 2.82229 2.92693 2.93540 2.95603 3.29994 3.69913 4.32076 5.18311 5.24420 5.33323 5.51630 5.63461 5.81297 6.02416 6.04580 6.17779 6.34333 6.45623 6.55292 6.65714 6.72532 6.87479 7.11898 7.17388 7.48644 7.60602 7.72778 7.87781 8.24095 8.50680 8.58190 9.82417 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.038387 B = 0.006297 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.239003 B = 4445.780568 C = 5009.292803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 C -0.284 4.284 4 S 0.044 5.956 5 C -0.059 4.059 6 C -0.161 4.161 7 C 0.128 3.872 8 C -0.431 4.431 9 H 0.089 0.911 10 C 0.071 3.929 11 N -0.767 5.767 12 Si 0.916 3.084 13 H -0.264 1.264 14 H -0.274 1.274 15 H -0.259 1.259 16 C -0.195 4.195 17 C -0.044 4.044 18 C -0.245 4.245 19 C 0.145 3.855 20 F -0.145 7.145 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.126 0.874 27 H 0.289 0.711 28 H 0.105 0.895 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.680 -5.058 0.359 5.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 C -0.400 4.400 4 S 0.304 5.696 5 C -0.174 4.174 6 C -0.188 4.188 7 C 0.121 3.879 8 C -0.459 4.459 9 H 0.107 0.893 10 C -0.151 4.151 11 N -0.390 5.390 12 Si 0.740 3.260 13 H -0.188 1.188 14 H -0.199 1.199 15 H -0.182 1.182 16 C -0.214 4.214 17 C -0.064 4.064 18 C -0.250 4.250 19 C 0.115 3.885 20 F -0.124 7.124 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.144 0.856 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.001 -5.431 -1.295 5.672 hybrid contribution 0.350 0.861 1.323 1.617 sum -0.651 -4.570 0.028 4.616 Atomic orbital electron populations 1.21767 0.95330 1.00845 1.02325 1.19743 0.95440 0.90244 1.01951 1.23205 1.19504 1.01667 0.95613 1.83554 1.73131 1.05653 1.07289 1.22008 1.03496 0.97740 0.94158 1.20564 1.08582 0.89530 1.00107 1.17528 0.87689 0.92287 0.90368 1.19738 1.25517 1.00521 1.00120 0.89335 1.26089 0.93846 0.98618 0.96553 1.69849 1.19252 1.36987 1.12875 0.86159 0.80168 0.80047 0.79665 1.18837 1.19927 1.18227 1.20687 1.08087 0.96531 0.96090 1.20172 0.97299 0.92619 0.96322 1.17449 1.19302 0.94330 0.93924 1.16268 1.01729 0.91912 0.78624 1.91361 1.93325 1.87382 1.40301 0.92494 0.92904 0.92735 0.91502 0.91299 0.85628 0.90027 0.87681 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.89 37.15 0.37 -1.68 15 2 C -0.03 -0.55 6.26 -27.88 -0.17 -0.72 15 3 C -0.28 -5.64 5.68 -36.19 -0.21 -5.85 15 4 S 0.04 0.90 23.26 -107.50 -2.50 -1.60 15 5 C -0.06 -1.43 6.46 -38.55 -0.25 -1.68 15 6 C -0.16 -4.09 8.72 -38.54 -0.34 -4.42 15 7 C 0.13 3.20 5.57 -106.90 -0.59 2.61 15 8 C -0.43 -10.41 9.03 -37.94 -0.34 -10.75 15 9 H 0.09 2.00 7.91 -52.48 -0.41 1.59 15 10 C 0.07 1.62 5.12 -17.35 -0.09 1.53 15 11 N -0.77 -18.39 10.97 55.54 0.61 -17.78 15 12 Si 0.92 16.99 29.60 -169.99 -5.03 11.96 15 13 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 14 H -0.27 -5.00 7.11 56.52 0.40 -4.59 15 15 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 16 C -0.19 -4.51 9.68 -39.52 -0.38 -4.89 15 17 C -0.04 -0.99 9.97 -39.23 -0.39 -1.38 15 18 C -0.24 -5.80 5.89 -106.80 -0.63 -6.42 15 19 C 0.15 3.17 7.30 -40.62 -0.30 2.87 15 20 F -0.14 -2.99 16.93 2.25 0.04 -2.95 15 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.07 0.96 8.14 -51.93 -0.42 0.53 15 25 H 0.07 1.04 7.98 -51.93 -0.41 0.63 15 26 H 0.13 3.26 6.16 -52.49 -0.32 2.94 15 27 H 0.29 6.23 8.30 -40.82 -0.34 5.89 15 28 H 0.11 2.19 8.06 -52.49 -0.42 1.76 15 29 H 0.10 1.98 8.06 -52.49 -0.42 1.56 15 LS Contribution 270.68 15.07 4.08 4.08 Total: -1.00 -25.64 270.68 -8.95 -34.59 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -2.82 Total: 2.49 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: -3.32 Total: -30.78 kcal Atomic # 7 Polarization: -18.39 SS G_CDS: 0.61 Total: -17.78 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.50 Total: -1.60 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -25.64 -8.95 -34.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315277.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.550 kcal (2) G-P(sol) polarization free energy of solvation -25.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds