Wall clock time and date at job start Mon Mar 30 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.46965 * 2 1 4 4 S 1.75481 * 124.58812 * 270.57023 * 3 2 1 5 5 C 1.76046 * 91.56859 * 180.02562 * 4 3 2 6 6 C 1.38865 * 130.43414 * 179.40104 * 5 4 3 7 7 C 1.40381 * 119.96924 * 179.97438 * 6 5 4 8 8 C 1.40970 * 120.19945 * 179.97438 * 7 6 5 9 9 H 1.08007 * 120.00071 * 204.72995 * 8 7 6 10 10 C 1.39854 * 120.00401 * 24.73078 * 8 7 6 11 11 N 1.30897 * 119.99950 * 17.98372 * 10 8 7 12 12 Si 1.86807 * 120.00060 * 197.98830 * 10 8 7 13 13 H 1.48499 * 109.46780 * 89.99667 * 12 10 8 14 14 H 1.48495 * 109.46748 * 209.99487 * 12 10 8 15 15 H 1.48502 * 109.46886 * 329.99517 * 12 10 8 16 16 C 1.41275 * 119.59544 * 359.97438 * 7 6 5 17 17 C 1.35174 * 120.39204 * 0.03354 * 16 7 6 18 18 C 1.40374 * 109.40545 * 359.63357 * 5 4 3 19 19 C 1.32714 * 124.58327 * 90.00304 * 3 2 1 20 20 F 1.35104 * 122.08269 * 359.94263 * 19 3 2 21 21 H 1.08994 * 109.47609 * 59.99595 * 1 2 3 22 22 H 1.09001 * 109.46818 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47191 * 299.99645 * 1 2 3 24 24 H 1.08995 * 109.47169 * 240.00957 * 2 1 3 25 25 H 1.08994 * 109.47609 * 120.00404 * 2 1 3 26 26 H 1.07996 * 120.01769 * 359.92804 * 6 5 4 27 27 H 0.96997 * 120.00372 * 180.02562 * 11 10 8 28 28 H 1.08002 * 119.80077 * 180.02562 * 16 7 6 29 29 H 1.07999 * 119.56434 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 16 2.3507 2.3648 -1.4446 5 6 2.8525 3.7531 -0.4853 6 6 3.3032 5.0056 -0.8808 7 6 3.6493 5.9636 0.0852 8 6 4.1080 7.2364 -0.3109 9 1 4.7333 7.8156 0.3524 10 6 3.7533 7.7492 -1.5628 11 7 2.7394 7.2398 -2.2154 12 14 4.7267 9.1610 -2.3037 13 1 5.8432 8.6184 -3.1186 14 1 3.8355 9.9775 -3.1663 15 1 5.2750 10.0092 -1.2150 16 6 3.5352 5.6443 1.4566 17 6 3.0965 4.4248 1.8406 18 6 2.7474 3.4398 0.8790 19 6 2.2834 2.1310 1.0926 20 9 2.1040 1.6269 2.3332 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.3882 5.2424 -1.9311 27 1 2.4936 7.5951 -3.0838 28 1 3.8002 6.3789 2.2026 29 1 3.0148 4.1948 2.8927 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396315277.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:15 Heat of formation + Delta-G solvation = -41.704631 kcal Electronic energy + Delta-G solvation = -15343.596620 eV Core-core repulsion = 12656.818972 eV Total energy + Delta-G solvation = -2686.777648 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.78230 -39.91723 -37.03220 -35.49982 -33.45883 -31.38711 -30.11242 -27.21007 -24.61484 -23.75688 -22.50477 -20.90143 -19.53696 -18.53826 -17.40586 -17.17434 -16.68630 -16.39031 -15.65213 -15.08326 -14.94748 -14.76061 -14.24215 -14.17468 -13.95572 -13.42131 -13.29912 -12.95054 -12.77115 -12.48967 -12.39858 -12.12128 -11.83675 -11.66290 -11.55278 -11.28320 -10.94928 -10.21397 -9.24306 -8.80904 -8.44156 -6.43799 -0.01664 0.79074 0.84461 1.19172 1.25373 1.39872 1.53911 1.63394 2.15064 2.57277 3.49509 3.59491 3.81735 4.14574 4.24554 4.43484 4.51020 4.70432 4.75188 4.91522 4.94080 5.02152 5.12243 5.14430 5.30810 5.33016 5.39240 5.69112 5.80636 5.94707 6.04881 6.42888 6.70218 6.77123 8.13975 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.038387 B = 0.006297 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.239003 B = 4445.780568 C = 5009.292803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.261 4.261 4 S 0.073 5.927 5 C -0.087 4.087 6 C -0.185 4.185 7 C 0.100 3.900 8 C -0.459 4.459 9 H 0.096 0.904 10 C 0.033 3.967 11 N -0.802 5.802 12 Si 0.990 3.010 13 H -0.261 1.261 14 H -0.267 1.267 15 H -0.251 1.251 16 C -0.202 4.202 17 C -0.052 4.052 18 C -0.259 4.259 19 C 0.117 3.883 20 F -0.139 7.139 21 H 0.052 0.948 22 H 0.085 0.915 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.296 0.704 28 H 0.123 0.877 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -5.988 0.227 6.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.377 4.377 4 S 0.334 5.666 5 C -0.202 4.202 6 C -0.212 4.212 7 C 0.094 3.906 8 C -0.487 4.487 9 H 0.114 0.886 10 C -0.186 4.186 11 N -0.425 5.425 12 Si 0.810 3.190 13 H -0.186 1.186 14 H -0.191 1.191 15 H -0.174 1.174 16 C -0.221 4.221 17 C -0.072 4.072 18 C -0.264 4.264 19 C 0.086 3.914 20 F -0.118 7.118 21 H 0.071 0.929 22 H 0.104 0.896 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.128 0.872 27 H 0.107 0.893 28 H 0.141 0.859 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.133 -6.367 -1.417 6.620 hybrid contribution 0.313 0.970 1.374 1.711 sum -0.819 -5.397 -0.043 5.459 Atomic orbital electron populations 1.21746 0.93747 1.02863 1.01568 1.19994 0.96695 0.87534 1.03591 1.23852 1.16165 1.03134 0.94548 1.83395 1.72207 1.03967 1.07042 1.22308 1.03789 0.98621 0.95490 1.20491 1.10644 0.90589 0.99492 1.17891 0.88423 0.92985 0.91309 1.20035 1.26462 1.00719 1.01521 0.88598 1.26969 0.94244 1.01029 0.96327 1.69900 1.20557 1.38563 1.13502 0.85065 0.78479 0.76681 0.78814 1.18609 1.19145 1.17439 1.20920 1.08048 0.97303 0.95875 1.20462 0.96882 0.92369 0.97475 1.17835 1.19089 0.95510 0.93996 1.16237 1.03876 0.91736 0.79522 1.91364 1.93460 1.87146 1.39869 0.92924 0.89575 0.93851 0.89422 0.90069 0.87191 0.89303 0.85869 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.89 71.98 0.71 -2.82 15 2 C -0.04 -1.11 6.26 29.85 0.19 -0.92 15 3 C -0.26 -9.88 5.68 24.51 0.14 -9.74 15 4 S 0.07 2.97 23.26 -56.49 -1.31 1.65 15 5 C -0.09 -4.28 6.46 22.94 0.15 -4.13 15 6 C -0.19 -9.75 8.72 22.94 0.20 -9.55 15 7 C 0.10 5.18 5.57 -21.34 -0.12 5.06 15 8 C -0.46 -22.73 9.03 23.33 0.21 -22.52 15 9 H 0.10 4.41 7.91 -2.91 -0.02 4.39 15 10 C 0.03 1.53 5.12 85.22 0.44 1.96 15 11 N -0.80 -39.42 10.97 21.81 0.24 -39.18 15 12 Si 0.99 34.73 29.60 68.60 2.03 36.76 15 13 H -0.26 -9.01 7.11 99.48 0.71 -8.31 15 14 H -0.27 -8.96 7.11 99.48 0.71 -8.25 15 15 H -0.25 -8.42 7.11 99.48 0.71 -7.72 15 16 C -0.20 -9.51 9.68 22.31 0.22 -9.30 15 17 C -0.05 -2.36 9.97 22.50 0.22 -2.13 15 18 C -0.26 -12.28 5.89 -21.27 -0.13 -12.40 15 19 C 0.12 4.97 7.30 21.65 0.16 5.13 15 20 F -0.14 -5.56 16.93 44.97 0.76 -4.80 15 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 15 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.04 1.17 8.14 -2.38 -0.02 1.16 15 24 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.08 2.16 7.98 -2.39 -0.02 2.14 15 26 H 0.11 5.99 6.16 -2.91 -0.02 5.97 15 27 H 0.30 13.03 8.30 -92.71 -0.77 12.26 15 28 H 0.12 5.15 8.06 -2.91 -0.02 5.13 15 29 H 0.12 4.80 8.06 -2.91 -0.02 4.78 15 Total: -1.00 -55.59 270.68 5.27 -50.32 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 1.17 Total: 16.61 kcal Atomic # 6 Polarization: -63.74 SS G_CDS: 2.39 Total: -61.36 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.24 Total: -39.18 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.76 Total: -4.80 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.31 Total: 1.65 kcal Total: -55.59 5.27 -50.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315277.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.615 kcal (2) G-P(sol) polarization free energy of solvation -55.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds