Wall clock time and date at job start Mon Mar 30 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 C 1.41942 * 119.77445 * 269.72350 * 3 2 1 5 5 C 1.39801 * 128.50618 * 0.63486 * 4 3 2 6 6 C 1.36944 * 115.02695 * 179.64260 * 5 4 3 7 7 C 1.39916 * 124.83079 * 179.76753 * 6 5 4 8 8 H 1.08010 * 120.00023 * 0.02562 * 7 6 5 9 9 C 1.40184 * 120.00525 * 179.97438 * 7 6 5 10 10 N 1.30757 * 119.99765 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00305 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47208 * 90.00240 * 11 9 7 13 13 H 1.48499 * 109.47238 * 210.00195 * 11 9 7 14 14 H 1.48497 * 109.47287 * 330.00102 * 11 9 7 15 15 S 1.75457 * 110.34355 * 359.75333 * 6 5 4 16 16 C 1.40318 * 118.60782 * 179.79505 * 4 3 2 17 17 C 1.39648 * 119.80066 * 0.48002 * 16 4 3 18 18 C 1.37647 * 120.31907 * 359.74486 * 17 16 4 19 19 C 1.36078 * 119.76469 * 90.00184 * 3 2 1 20 20 F 1.35100 * 119.70691 * 359.95442 * 19 3 2 21 21 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 23 23 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 24 24 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 25 25 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 26 26 H 1.08007 * 122.48387 * 359.42095 * 5 4 3 27 27 H 0.96999 * 120.00271 * 179.97438 * 10 9 7 28 28 H 1.08004 * 119.83930 * 179.75974 * 17 16 4 29 29 H 1.08006 * 119.89114 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2729 2.0834 -1.2320 5 6 2.0950 1.5977 -2.5308 6 6 2.4083 2.4822 -3.5282 7 6 2.3116 2.2101 -4.8972 8 1 1.9680 1.2425 -5.2325 9 6 2.6594 3.1935 -5.8337 10 7 3.0748 4.3650 -5.4278 11 14 2.5295 2.8303 -7.6614 12 1 1.1755 3.2018 -8.1449 13 1 3.5511 3.6185 -8.3966 14 1 2.7588 1.3820 -7.8959 15 16 2.9481 4.0056 -2.8451 16 6 2.7363 3.4076 -1.2035 17 6 2.9593 4.0386 0.0222 18 6 2.7219 3.3696 1.2015 19 6 2.2576 2.0578 1.1813 20 9 2.0280 1.4111 2.3450 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 1.7402 0.5977 -2.7326 27 1 3.3159 5.0454 -6.0758 28 1 3.3197 5.0565 0.0449 29 1 2.8964 3.8644 2.1456 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315289.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:35 Heat of formation + Delta-G solvation = -46.388800 kcal Electronic energy + Delta-G solvation = -15445.333842 eV Core-core repulsion = 12758.353072 eV Total energy + Delta-G solvation = -2686.980769 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.10846 -38.32844 -35.02454 -33.37107 -33.02207 -28.93154 -28.44760 -25.56141 -23.13069 -22.35709 -20.41465 -19.37143 -17.90932 -16.28806 -15.97049 -15.55887 -14.90007 -14.83034 -14.02270 -13.46065 -13.27880 -13.13469 -12.56666 -12.35157 -12.07724 -11.90575 -11.71177 -11.47257 -11.42588 -11.18602 -10.61433 -10.54845 -10.30604 -10.17790 -9.78763 -9.34792 -9.14076 -8.29120 -7.46844 -7.27698 -6.41974 -4.78846 1.91004 2.20745 2.74749 2.79601 2.85863 3.19605 3.46733 3.51022 3.76927 4.47651 4.93235 5.21440 5.45522 5.59191 5.81762 5.96144 6.01509 6.23660 6.33063 6.42188 6.51315 6.57216 6.71650 6.87374 6.95939 7.10301 7.17173 7.29731 7.42285 7.67293 7.80825 7.97595 8.21322 8.31135 9.55071 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.006748 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.343265 B = 4148.351141 C = 4844.395283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.155 4.155 4 C 0.047 3.953 5 C -0.360 4.360 6 C 0.057 3.943 7 C -0.378 4.378 8 H 0.100 0.900 9 C 0.053 3.947 10 N -0.772 5.772 11 Si 0.939 3.061 12 H -0.262 1.262 13 H -0.270 1.270 14 H -0.256 1.256 15 S 0.143 5.857 16 C -0.279 4.279 17 C -0.027 4.027 18 C -0.233 4.233 19 C 0.105 3.895 20 F -0.158 7.158 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.109 0.891 27 H 0.303 0.697 28 H 0.110 0.890 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 -1.044 1.364 1.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.158 4.158 4 C 0.039 3.961 5 C -0.384 4.384 6 C -0.062 4.062 7 C -0.412 4.412 8 H 0.118 0.882 9 C -0.170 4.170 10 N -0.398 5.398 11 Si 0.762 3.238 12 H -0.187 1.187 13 H -0.195 1.195 14 H -0.179 1.179 15 S 0.403 5.597 16 C -0.393 4.393 17 C -0.050 4.050 18 C -0.254 4.254 19 C 0.084 3.916 20 F -0.137 7.137 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.127 0.873 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.306 0.489 0.690 0.899 hybrid contribution -0.516 -1.471 0.137 1.565 sum -0.822 -0.982 0.827 1.525 Atomic orbital electron populations 1.21685 0.95651 1.00519 1.01968 1.20203 0.95579 0.93189 1.01697 1.19223 1.08552 0.96931 0.91086 1.17597 0.94541 0.91677 0.92301 1.19542 1.27562 1.01839 0.89483 1.21459 0.94019 0.94327 0.96430 1.19385 1.32697 1.00089 0.88985 0.88165 1.26352 0.92538 0.93914 1.04151 1.68622 1.28573 1.04079 1.38547 0.85735 0.79423 0.80322 0.78312 1.18709 1.19505 1.17923 1.84809 1.70488 1.15120 0.89282 1.23710 1.14701 0.99685 1.01236 1.19999 0.97175 0.97820 0.89964 1.20366 1.12599 0.94398 0.98080 1.16766 1.03314 0.91409 0.80134 1.91356 1.92965 1.81834 1.47589 0.93345 0.93300 0.92287 0.91210 0.92347 0.87290 0.88394 0.87176 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 37.16 0.37 -2.01 15 2 C -0.07 -1.30 5.65 -27.88 -0.16 -1.46 15 3 C -0.16 -3.40 5.18 -103.98 -0.54 -3.94 15 4 C 0.05 1.13 5.82 -107.11 -0.62 0.51 15 5 C -0.36 -8.84 9.56 -39.47 -0.38 -9.22 15 6 C 0.06 1.44 6.11 -39.42 -0.24 1.20 15 7 C -0.38 -9.00 9.27 -38.22 -0.35 -9.35 15 8 H 0.10 2.25 7.85 -52.48 -0.41 1.83 15 9 C 0.05 1.15 5.50 -17.28 -0.10 1.06 15 10 N -0.77 -17.39 10.58 55.56 0.59 -16.80 15 11 Si 0.94 16.28 29.56 -169.99 -5.03 11.25 15 12 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 13 H -0.27 -4.57 7.11 56.52 0.40 -4.16 15 14 H -0.26 -4.39 7.11 56.52 0.40 -3.99 15 15 S 0.14 3.42 20.13 -107.50 -2.16 1.25 15 16 C -0.28 -6.59 6.47 -38.27 -0.25 -6.84 15 17 C -0.03 -0.57 10.06 -39.27 -0.40 -0.97 15 18 C -0.23 -4.72 10.02 -39.45 -0.40 -5.11 15 19 C 0.10 2.22 7.16 -40.01 -0.29 1.94 15 20 F -0.16 -3.16 16.35 2.25 0.04 -3.13 15 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.06 1.06 8.14 -51.92 -0.42 0.63 15 24 H 0.07 1.30 7.13 -51.93 -0.37 0.93 15 25 H 0.06 1.03 7.56 -51.93 -0.39 0.63 15 26 H 0.11 2.56 7.36 -52.48 -0.39 2.18 15 27 H 0.30 6.07 8.29 -40.82 -0.34 5.73 15 28 H 0.11 2.02 8.06 -52.48 -0.42 1.60 15 29 H 0.11 1.99 8.06 -52.48 -0.42 1.57 15 LS Contribution 267.38 15.07 4.03 4.03 Total: -1.00 -25.39 267.38 -8.69 -34.08 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -2.81 Total: 3.51 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: -3.34 Total: -34.19 kcal Atomic # 7 Polarization: -17.39 SS G_CDS: 0.59 Total: -16.80 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.16 Total: 1.25 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.39 -8.69 -34.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315289.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.307 kcal (2) G-P(sol) polarization free energy of solvation -25.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds