Wall clock time and date at job start Mon Mar 30 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 C 1.41942 * 119.77445 * 269.72350 * 3 2 1 5 5 C 1.39801 * 128.50618 * 0.63486 * 4 3 2 6 6 C 1.36944 * 115.02695 * 179.64260 * 5 4 3 7 7 C 1.39916 * 124.83079 * 179.76753 * 6 5 4 8 8 H 1.08010 * 120.00023 * 0.02562 * 7 6 5 9 9 C 1.40184 * 120.00525 * 179.97438 * 7 6 5 10 10 N 1.30757 * 119.99765 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00305 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47208 * 90.00240 * 11 9 7 13 13 H 1.48499 * 109.47238 * 210.00195 * 11 9 7 14 14 H 1.48497 * 109.47287 * 330.00102 * 11 9 7 15 15 S 1.75457 * 110.34355 * 359.75333 * 6 5 4 16 16 C 1.40318 * 118.60782 * 179.79505 * 4 3 2 17 17 C 1.39648 * 119.80066 * 0.48002 * 16 4 3 18 18 C 1.37647 * 120.31907 * 359.74486 * 17 16 4 19 19 C 1.36078 * 119.76469 * 90.00184 * 3 2 1 20 20 F 1.35100 * 119.70691 * 359.95442 * 19 3 2 21 21 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 23 23 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 24 24 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 25 25 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 26 26 H 1.08007 * 122.48387 * 359.42095 * 5 4 3 27 27 H 0.96999 * 120.00271 * 179.97438 * 10 9 7 28 28 H 1.08004 * 119.83930 * 179.75974 * 17 16 4 29 29 H 1.08006 * 119.89114 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2729 2.0834 -1.2320 5 6 2.0950 1.5977 -2.5308 6 6 2.4083 2.4822 -3.5282 7 6 2.3116 2.2101 -4.8972 8 1 1.9680 1.2425 -5.2325 9 6 2.6594 3.1935 -5.8337 10 7 3.0748 4.3650 -5.4278 11 14 2.5295 2.8303 -7.6614 12 1 1.1755 3.2018 -8.1449 13 1 3.5511 3.6185 -8.3966 14 1 2.7588 1.3820 -7.8959 15 16 2.9481 4.0056 -2.8451 16 6 2.7363 3.4076 -1.2035 17 6 2.9593 4.0386 0.0222 18 6 2.7219 3.3696 1.2015 19 6 2.2576 2.0578 1.1813 20 9 2.0280 1.4111 2.3450 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 1.7402 0.5977 -2.7326 27 1 3.3159 5.0454 -6.0758 28 1 3.3197 5.0565 0.0449 29 1 2.8964 3.8644 2.1456 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396315289.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:35 Heat of formation + Delta-G solvation = -56.745021 kcal Electronic energy + Delta-G solvation = -15445.782921 eV Core-core repulsion = 12758.353072 eV Total energy + Delta-G solvation = -2687.429849 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.73634 -40.03121 -36.75615 -34.91160 -34.74306 -30.68296 -30.03362 -27.28998 -24.68355 -24.09269 -22.04597 -21.11152 -19.66652 -17.93569 -17.67045 -17.23890 -16.47683 -16.44894 -15.69171 -15.04087 -14.78594 -14.67769 -14.20864 -14.00908 -13.76409 -13.47152 -13.30515 -13.12007 -12.97799 -12.67850 -12.16508 -11.99519 -11.89721 -11.80683 -11.42344 -11.02247 -10.96165 -10.00880 -9.24276 -8.94554 -8.22593 -6.59179 0.20613 0.48110 1.29973 1.35892 1.40261 1.54410 1.82491 1.87747 2.13185 2.76253 3.15086 3.54765 3.91107 4.08271 4.27731 4.48521 4.52865 4.68643 4.77403 4.87719 4.96230 5.00229 5.12394 5.31056 5.32121 5.43170 5.46024 5.54172 5.67136 5.89793 6.04774 6.25850 6.43530 6.52565 7.91980 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.006748 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.343265 B = 4148.351141 C = 4844.395283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 C -0.165 4.165 4 C 0.025 3.975 5 C -0.382 4.382 6 C 0.028 3.972 7 C -0.405 4.405 8 H 0.104 0.896 9 C 0.018 3.982 10 N -0.794 5.794 11 Si 1.013 2.987 12 H -0.257 1.257 13 H -0.259 1.259 14 H -0.254 1.254 15 S 0.132 5.868 16 C -0.300 4.300 17 C -0.033 4.033 18 C -0.222 4.222 19 C 0.097 3.903 20 F -0.150 7.150 21 H 0.077 0.923 22 H 0.049 0.951 23 H 0.040 0.960 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.314 0.686 28 H 0.137 0.863 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 -0.994 1.487 2.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 C -0.168 4.168 4 C 0.017 3.983 5 C -0.407 4.407 6 C -0.092 4.092 7 C -0.438 4.438 8 H 0.122 0.878 9 C -0.201 4.201 10 N -0.420 5.420 11 Si 0.831 3.169 12 H -0.181 1.181 13 H -0.183 1.183 14 H -0.177 1.177 15 S 0.391 5.609 16 C -0.415 4.415 17 C -0.056 4.056 18 C -0.243 4.243 19 C 0.076 3.924 20 F -0.129 7.129 21 H 0.096 0.904 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.155 0.845 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.368 0.541 0.846 1.069 hybrid contribution -0.484 -1.469 0.221 1.563 sum -0.852 -0.928 1.067 1.651 Atomic orbital electron populations 1.21626 0.94159 1.02226 1.01116 1.20267 0.96843 0.91549 1.02059 1.19551 1.08166 0.98374 0.90719 1.17816 0.95363 0.92331 0.92815 1.19623 1.28993 1.01930 0.90117 1.21805 0.94965 0.94990 0.97392 1.19728 1.33721 1.01124 0.89220 0.87779 1.27290 0.91308 0.93174 1.08362 1.68636 1.28063 1.04854 1.40461 0.84685 0.79744 0.80224 0.72283 1.18094 1.18297 1.17698 1.84554 1.71085 1.15139 0.90081 1.23976 1.15614 1.00007 1.01877 1.20338 0.96907 0.99088 0.89225 1.20766 1.10451 0.93918 0.99185 1.16917 1.03275 0.91957 0.80225 1.91375 1.92867 1.81736 1.46878 0.90396 0.93139 0.94050 0.91768 0.90952 0.87557 0.87202 0.84540 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 9.89 71.98 0.71 -3.66 15 2 C -0.07 -2.57 5.65 29.85 0.17 -2.40 15 3 C -0.17 -7.18 5.18 -19.45 -0.10 -7.28 15 4 C 0.02 1.21 5.82 -21.48 -0.12 1.09 15 5 C -0.38 -19.49 9.56 22.34 0.21 -19.27 15 6 C 0.03 1.45 6.11 22.37 0.14 1.59 15 7 C -0.40 -19.70 9.27 23.15 0.21 -19.49 15 8 H 0.10 4.79 7.85 -2.91 -0.02 4.77 15 9 C 0.02 0.80 5.50 85.33 0.47 1.27 15 10 N -0.79 -35.78 10.58 21.87 0.23 -35.55 15 11 Si 1.01 32.44 29.56 68.60 2.03 34.47 15 12 H -0.26 -7.96 7.11 99.48 0.71 -7.26 15 13 H -0.26 -7.78 7.11 99.48 0.71 -7.07 15 14 H -0.25 -7.98 7.11 99.48 0.71 -7.27 15 15 S 0.13 6.44 20.13 -56.49 -1.14 5.30 15 16 C -0.30 -14.29 6.47 23.12 0.15 -14.14 15 17 C -0.03 -1.36 10.06 22.47 0.23 -1.14 15 18 C -0.22 -8.46 10.02 22.35 0.22 -8.23 15 19 C 0.10 3.97 7.16 21.99 0.16 4.12 15 20 F -0.15 -5.62 16.35 44.97 0.74 -4.88 15 21 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.04 1.48 8.14 -2.38 -0.02 1.46 15 24 H 0.06 2.41 7.13 -2.39 -0.02 2.39 15 25 H 0.07 2.43 7.56 -2.39 -0.02 2.41 15 26 H 0.11 5.24 7.36 -2.91 -0.02 5.22 15 27 H 0.31 12.41 8.29 -92.71 -0.77 11.64 15 28 H 0.14 4.73 8.06 -2.91 -0.02 4.70 15 29 H 0.15 4.58 8.06 -2.91 -0.02 4.56 15 Total: -1.00 -54.50 267.38 5.47 -49.03 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.17 Total: 19.18 kcal Atomic # 6 Polarization: -70.00 SS G_CDS: 2.45 Total: -67.55 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.23 Total: -35.55 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.74 Total: -4.88 kcal Atomic # 14 Polarization: 32.44 SS G_CDS: 2.03 Total: 34.47 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -1.14 Total: 5.30 kcal Total: -54.50 5.47 -49.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315289.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.718 kcal (2) G-P(sol) polarization free energy of solvation -54.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds