Wall clock time and date at job start Mon Mar 30 2020 05:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50703 * 109.46784 * 2 1 4 4 S 1.75500 * 124.66490 * 269.69428 * 3 2 1 5 5 C 1.76065 * 91.53535 * 179.97438 * 4 3 2 6 6 C 1.39626 * 130.59964 * 180.02562 * 5 4 3 7 7 C 1.38133 * 121.44720 * 180.36992 * 6 5 4 8 8 C 1.37633 * 121.09998 * 359.95633 * 7 6 5 9 9 C 1.40345 * 120.13268 * 0.04424 * 8 7 6 10 10 C 1.40568 * 120.40691 * 180.02562 * 9 8 7 11 11 H 1.07992 * 120.00089 * 153.61324 * 10 9 8 12 12 C 1.39964 * 119.99640 * 333.60699 * 10 9 8 13 13 N 1.30854 * 120.00554 * 343.52931 * 12 10 9 14 14 Si 1.86803 * 119.99994 * 163.52740 * 12 10 9 15 15 H 1.48502 * 109.46742 * 90.00142 * 14 12 10 16 16 H 1.48497 * 109.47247 * 210.00130 * 14 12 10 17 17 H 1.48497 * 109.47155 * 330.00332 * 14 12 10 18 18 C 1.39775 * 109.33968 * 0.33760 * 5 4 3 19 19 C 1.32895 * 124.66205 * 90.00116 * 3 2 1 20 20 F 1.35095 * 122.12413 * 359.97438 * 19 3 2 21 21 H 1.08999 * 109.46870 * 60.00323 * 1 2 3 22 22 H 1.09002 * 109.46994 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47096 * 299.99819 * 1 2 3 24 24 H 1.08990 * 109.46978 * 119.99818 * 2 1 3 25 25 H 1.08995 * 109.47096 * 240.00181 * 2 1 3 26 26 H 1.07998 * 119.27838 * 0.32739 * 6 5 4 27 27 H 1.08001 * 119.45217 * 179.97438 * 7 6 5 28 28 H 1.07995 * 119.93543 * 180.02562 * 8 7 6 29 29 H 0.97000 * 120.00521 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3723 2.3594 -1.4435 5 6 2.8581 3.7516 -0.4812 6 6 3.3060 5.0148 -0.8724 7 6 3.6486 5.9777 0.0569 8 6 3.5597 5.7260 1.4071 9 6 3.1162 4.4749 1.8629 10 6 3.0228 4.2118 3.2406 11 1 2.3209 3.4756 3.6033 12 6 3.8396 4.9039 4.1421 13 7 4.8955 5.5444 3.7096 14 14 3.4224 4.9133 5.9629 15 1 4.0859 3.7636 6.6286 16 1 3.8982 6.1807 6.5733 17 1 1.9515 4.8030 6.1343 18 6 2.7474 3.4373 0.8762 19 6 2.2843 2.1335 1.0931 20 9 2.1063 1.6316 2.3347 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 3.3869 5.2440 -1.9247 27 1 3.9916 6.9442 -0.2816 28 1 3.8321 6.4926 2.1173 29 1 5.4614 6.0244 4.3344 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315394.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:18 Heat of formation + Delta-G solvation = -27.501542 kcal Electronic energy + Delta-G solvation = -15671.157998 eV Core-core repulsion = 12984.996242 eV Total energy + Delta-G solvation = -2686.161756 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.88821 -37.86457 -35.11287 -33.94427 -31.96968 -29.91527 -27.62500 -25.45786 -23.37599 -21.94969 -20.55209 -19.25595 -17.85789 -16.35267 -15.71429 -15.32503 -14.96723 -14.76761 -14.07845 -13.64500 -13.24730 -13.06566 -12.76762 -12.31378 -12.15122 -11.79880 -11.60487 -11.34676 -11.23922 -10.93618 -10.85493 -10.65583 -10.33308 -9.82231 -9.71222 -9.57302 -9.39809 -8.19672 -7.37124 -7.12566 -6.75984 -4.58706 1.72991 2.49162 2.58644 2.88821 2.91847 2.95845 3.03564 3.34932 3.69950 4.31005 5.28033 5.33399 5.36273 5.64419 5.70936 5.94414 6.08765 6.12442 6.23452 6.39081 6.50228 6.55967 6.75747 6.79622 6.81794 7.11451 7.16640 7.64091 7.68445 7.78465 7.90040 8.29948 8.47168 8.60459 9.77104 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.008850 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.839695 B = 3163.072239 C = 4201.364260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.032 4.032 3 C -0.299 4.299 4 S 0.037 5.963 5 C -0.054 4.054 6 C -0.232 4.232 7 C -0.057 4.057 8 C -0.188 4.188 9 C 0.158 3.842 10 C -0.420 4.420 11 H 0.094 0.906 12 C 0.072 3.928 13 N -0.763 5.763 14 Si 0.918 3.082 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.255 1.255 18 C -0.231 4.231 19 C 0.167 3.833 20 F -0.134 7.134 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 -3.314 -2.292 5.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.415 4.415 4 S 0.297 5.703 5 C -0.169 4.169 6 C -0.258 4.258 7 C -0.078 4.078 8 C -0.210 4.210 9 C 0.153 3.847 10 C -0.447 4.447 11 H 0.112 0.888 12 C -0.151 4.151 13 N -0.385 5.385 14 Si 0.741 3.259 15 H -0.189 1.189 16 H -0.196 1.196 17 H -0.179 1.179 18 C -0.237 4.237 19 C 0.136 3.864 20 F -0.112 7.112 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.132 -3.591 -3.657 6.007 hybrid contribution 0.125 0.289 2.400 2.421 sum -3.007 -3.302 -1.257 4.640 Atomic orbital electron populations 1.21769 0.95480 1.00737 1.02224 1.19702 0.95303 0.90225 1.01873 1.23113 1.21375 1.01913 0.95058 1.83321 1.73171 1.05702 1.08061 1.21877 1.03180 0.97171 0.94628 1.19492 1.15810 0.92959 0.97576 1.20514 0.96927 0.96765 0.93578 1.21047 1.08674 0.97159 0.94119 1.18384 0.86436 0.88755 0.91162 1.19872 1.16294 1.17387 0.91099 0.88824 1.26148 0.93350 0.92728 1.02833 1.69834 1.08889 1.21301 1.38481 0.86118 0.80772 0.78931 0.80079 1.18881 1.19596 1.17877 1.18875 1.17642 0.93792 0.93355 1.16137 0.99767 0.91633 0.78827 1.91381 1.92901 1.87206 1.39760 0.92686 0.93011 0.92652 0.91223 0.91722 0.88736 0.88383 0.85847 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.90 37.16 0.37 -1.74 15 2 C -0.03 -0.53 6.27 -27.88 -0.17 -0.70 15 3 C -0.30 -6.16 5.70 -36.15 -0.21 -6.37 15 4 S 0.04 0.74 23.27 -107.50 -2.50 -1.76 15 5 C -0.05 -1.27 6.49 -38.49 -0.25 -1.52 15 6 C -0.23 -5.22 10.02 -39.10 -0.39 -5.62 15 7 C -0.06 -1.28 9.95 -39.84 -0.40 -1.68 15 8 C -0.19 -4.68 8.65 -39.01 -0.34 -5.02 15 9 C 0.16 4.16 5.74 -104.29 -0.60 3.56 15 10 C -0.42 -10.77 8.57 -38.06 -0.33 -11.09 15 11 H 0.09 2.38 6.46 -52.49 -0.34 2.04 15 12 C 0.07 1.69 5.15 -17.32 -0.09 1.61 15 13 N -0.76 -18.30 11.00 55.55 0.61 -17.69 15 14 Si 0.92 17.56 29.59 -169.99 -5.03 12.53 15 15 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 16 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 17 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 18 C -0.23 -5.86 6.03 -104.71 -0.63 -6.49 15 19 C 0.17 3.94 7.24 -40.75 -0.30 3.65 15 20 F -0.13 -3.15 15.06 2.25 0.03 -3.11 15 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.07 1.14 7.99 -51.93 -0.42 0.72 15 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.09 1.89 8.06 -52.49 -0.42 1.47 15 27 H 0.10 1.90 8.06 -52.49 -0.42 1.47 15 28 H 0.12 3.07 6.23 -52.49 -0.33 2.74 15 29 H 0.29 6.19 8.30 -40.82 -0.34 5.85 15 LS Contribution 267.59 15.07 4.03 4.03 Total: -1.00 -26.31 267.59 -8.93 -35.25 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -2.75 Total: 2.17 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: -3.33 Total: -31.42 kcal Atomic # 7 Polarization: -18.30 SS G_CDS: 0.61 Total: -17.69 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.03 Total: -3.11 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.50 Total: -1.76 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.31 -8.93 -35.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315394.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.747 kcal (2) G-P(sol) polarization free energy of solvation -26.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds