Wall clock time and date at job start Mon Mar 30 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47378 * 2 1 4 4 C 1.32690 * 122.09933 * 266.25087 * 3 2 1 5 5 S 1.75515 * 110.65552 * 179.89669 * 4 3 2 6 6 C 1.76058 * 91.50317 * 0.30286 * 5 4 3 7 7 C 1.39621 * 109.33384 * 359.83432 * 6 5 4 8 8 C 1.47887 * 118.09269 * 180.02562 * 7 6 5 9 9 C 1.40527 * 120.37364 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00457 * 326.34541 * 9 8 7 11 11 C 1.39960 * 119.99928 * 146.34276 * 9 8 7 12 12 N 1.30875 * 119.99701 * 350.41922 * 11 9 8 13 13 Si 1.86796 * 120.00058 * 170.42260 * 11 9 8 14 14 H 1.48497 * 109.47340 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47494 * 120.00207 * 13 11 9 16 16 H 1.48508 * 109.46978 * 240.00211 * 13 11 9 17 17 C 1.40385 * 119.25449 * 0.02562 * 8 7 6 18 18 C 1.37541 * 120.16305 * 359.95332 * 17 8 7 19 19 C 1.38445 * 121.04856 * 0.04768 * 18 17 8 20 20 F 1.35094 * 119.30992 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.47094 * 300.00356 * 1 2 3 22 22 H 1.08995 * 109.47370 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46567 * 60.00199 * 1 2 3 24 24 H 1.09005 * 109.46567 * 119.99801 * 2 1 3 25 25 H 1.08992 * 109.47320 * 239.99629 * 2 1 3 26 26 H 1.08005 * 124.67428 * 359.97438 * 4 3 2 27 27 H 0.97001 * 119.99645 * 179.97438 * 12 11 9 28 28 H 1.08002 * 119.91575 * 179.97438 * 17 8 7 29 29 H 1.07997 * 119.47495 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3367 2.0611 -1.1216 5 16 2.8860 3.6915 -0.7744 6 6 2.6854 3.4401 0.9566 7 6 2.2128 2.1461 1.1840 8 6 1.9739 1.7277 2.5822 9 6 1.4990 0.4359 2.8661 10 1 0.8203 -0.0523 2.1825 11 6 1.9057 -0.2181 4.0348 12 7 2.8660 0.2867 4.7667 13 14 1.0777 -1.8113 4.5498 14 1 0.0299 -2.1673 3.5596 15 1 2.0891 -2.8969 4.6130 16 1 0.4555 -1.6361 5.8868 17 6 2.2269 2.6355 3.6228 18 6 2.6926 3.8984 3.3401 19 6 2.9196 4.3002 2.0348 20 9 3.3768 5.5491 1.7973 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 1.8932 -0.5138 0.8901 25 1 1.8933 -0.5138 -0.8899 26 1 2.2563 1.6377 -2.1120 27 1 3.1476 -0.1663 5.5768 28 1 2.0558 2.3413 4.6477 29 1 2.8840 4.5877 4.1492 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396315795.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:49 Heat of formation + Delta-G solvation = -22.544485 kcal Electronic energy + Delta-G solvation = -15880.250548 eV Core-core repulsion = 13194.303746 eV Total energy + Delta-G solvation = -2685.946802 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.53772 -38.41063 -35.13733 -33.94957 -31.28346 -29.43424 -28.17619 -25.13646 -23.61935 -21.77964 -21.14659 -18.45337 -18.10104 -16.50810 -15.72562 -14.92010 -14.87918 -14.39624 -14.38357 -13.57370 -13.40691 -13.01042 -12.71028 -12.11839 -12.01408 -11.73228 -11.50888 -11.41668 -11.29893 -10.79379 -10.71201 -10.36776 -10.25801 -9.92203 -9.65794 -9.63910 -9.41551 -8.09122 -7.46031 -7.09371 -6.72587 -4.58183 1.76423 2.45026 2.55346 2.90666 2.92655 2.95139 2.99408 3.41167 3.68198 4.28498 5.20772 5.54812 5.65533 5.80647 5.90076 6.02225 6.03898 6.28611 6.41172 6.44378 6.62939 6.71985 6.77703 6.80437 6.91508 7.09062 7.30293 7.52051 7.65677 7.71597 7.83296 8.25728 8.44916 8.56160 9.83754 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022417 B = 0.009891 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.743993 B = 2830.193251 C = 3898.612959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.022 4.022 4 C -0.272 4.272 5 S 0.016 5.984 6 C -0.105 4.105 7 C -0.159 4.159 8 C 0.151 3.849 9 C -0.438 4.438 10 H 0.105 0.895 11 C 0.070 3.930 12 N -0.776 5.776 13 Si 0.914 3.086 14 H -0.255 1.255 15 H -0.270 1.270 16 H -0.269 1.269 17 C -0.164 4.164 18 C -0.089 4.089 19 C -0.029 4.029 20 F -0.169 7.169 21 H 0.065 0.935 22 H 0.049 0.951 23 H 0.046 0.954 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.147 0.853 27 H 0.287 0.713 28 H 0.128 0.872 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 -2.194 -3.003 4.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.034 4.034 4 C -0.405 4.405 5 S 0.279 5.721 6 C -0.220 4.220 7 C -0.166 4.166 8 C 0.146 3.854 9 C -0.465 4.465 10 H 0.123 0.877 11 C -0.151 4.151 12 N -0.399 5.399 13 Si 0.737 3.263 14 H -0.178 1.178 15 H -0.195 1.195 16 H -0.193 1.193 17 C -0.186 4.186 18 C -0.111 4.111 19 C -0.056 4.056 20 F -0.148 7.148 21 H 0.084 0.916 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.165 0.835 27 H 0.098 0.902 28 H 0.145 0.855 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.024 -1.033 -3.793 4.421 hybrid contribution -0.454 -1.491 1.072 1.891 sum -2.477 -2.524 -2.720 4.462 Atomic orbital electron populations 1.21735 0.95486 1.00786 1.02047 1.20579 0.95603 0.92609 1.03004 1.18445 0.97525 0.96323 0.91069 1.24424 1.17313 0.97791 1.00973 1.83559 1.73456 1.14916 1.00205 1.22243 1.06912 0.98157 0.94730 1.18915 1.10737 0.92623 0.94308 1.18467 0.87063 0.92442 0.87429 1.20012 1.22977 0.99434 1.04116 0.87743 1.26099 0.93697 1.00236 0.95079 1.69816 1.19998 1.37908 1.12140 0.86137 0.80196 0.80249 0.79727 1.17826 1.19521 1.19349 1.20876 1.06758 0.91320 0.99650 1.20506 1.00136 0.97581 0.92845 1.16351 1.16558 0.80519 0.92123 1.91294 1.88346 1.39743 1.95426 0.91561 0.93185 0.93508 0.88308 0.92744 0.83539 0.90152 0.85453 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.12 37.16 0.34 -2.01 15 2 C -0.08 -1.43 5.38 -27.88 -0.15 -1.58 15 3 C -0.02 -0.47 5.07 -105.84 -0.54 -1.01 15 4 C -0.27 -5.38 10.82 28.84 0.31 -5.07 15 5 S 0.02 0.33 23.30 -107.50 -2.50 -2.17 15 6 C -0.10 -2.53 6.46 -38.44 -0.25 -2.78 15 7 C -0.16 -3.83 6.01 -104.76 -0.63 -4.46 15 8 C 0.15 3.72 5.67 -104.28 -0.59 3.12 15 9 C -0.44 -10.09 7.18 -38.07 -0.27 -10.36 15 10 H 0.10 2.24 3.67 -52.49 -0.19 2.05 15 11 C 0.07 1.54 5.24 -17.31 -0.09 1.45 15 12 N -0.78 -17.95 11.12 55.55 0.62 -17.33 15 13 Si 0.91 16.46 29.57 -169.99 -5.03 11.44 15 14 H -0.25 -4.49 7.11 56.52 0.40 -4.08 15 15 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 16 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 17 C -0.16 -3.97 8.59 -39.03 -0.34 -4.31 15 18 C -0.09 -2.08 9.92 -39.76 -0.39 -2.47 15 19 C -0.03 -0.71 7.31 -38.88 -0.28 -0.99 15 20 F -0.17 -3.96 17.24 2.25 0.04 -3.93 15 21 H 0.07 1.19 6.89 -51.93 -0.36 0.83 15 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 24 H 0.10 1.94 5.51 -51.93 -0.29 1.66 15 25 H 0.05 0.87 8.09 -51.93 -0.42 0.45 15 26 H 0.15 2.46 8.06 -52.48 -0.42 2.04 15 27 H 0.29 6.00 8.30 -40.82 -0.34 5.66 15 28 H 0.13 3.07 6.54 -52.49 -0.34 2.72 15 29 H 0.11 2.22 8.06 -52.49 -0.42 1.80 15 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -25.43 260.72 -8.25 -33.68 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -2.43 Total: 4.85 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -2.88 Total: -30.47 kcal Atomic # 7 Polarization: -17.95 SS G_CDS: 0.62 Total: -17.33 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 16.46 SS G_CDS: -5.03 Total: 11.44 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -2.50 Total: -2.17 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.43 -8.25 -33.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396315795.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.137 kcal (2) G-P(sol) polarization free energy of solvation -25.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds