Wall clock time and date at job start Mon Mar 30 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47415 * 2 1 4 4 C 1.37814 * 119.54753 * 265.20875 * 3 2 1 5 5 C 1.37877 * 120.76296 * 180.25669 * 4 3 2 6 6 C 1.40419 * 119.88806 * 359.51806 * 5 4 3 7 7 C 1.40921 * 120.11592 * 180.23245 * 6 5 4 8 8 H 1.08002 * 120.00106 * 154.46623 * 7 6 5 9 9 C 1.39903 * 120.00129 * 334.45518 * 7 6 5 10 10 N 1.30884 * 119.99941 * 342.60178 * 9 7 6 11 11 Si 1.86800 * 120.00098 * 162.59500 * 9 7 6 12 12 H 1.48495 * 109.47093 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47222 * 120.00645 * 11 9 7 14 14 H 1.48507 * 109.46877 * 240.00542 * 11 9 7 15 15 C 1.42163 * 119.76567 * 0.24245 * 6 5 4 16 16 S 1.75888 * 130.53350 * 180.02562 * 15 6 5 17 17 C 1.75293 * 92.19687 * 180.02562 * 16 15 6 18 18 C 1.31967 * 111.34609 * 359.97438 * 17 16 15 19 19 F 1.35101 * 122.57680 * 180.02562 * 18 17 16 20 20 C 1.39448 * 119.68151 * 0.02562 * 15 6 5 21 21 H 1.09003 * 109.47170 * 59.99945 * 1 2 3 22 22 H 1.08999 * 109.47572 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47505 * 300.00297 * 1 2 3 24 24 H 1.09003 * 109.47363 * 239.99321 * 2 1 3 25 25 H 1.09003 * 109.47170 * 120.00054 * 2 1 3 26 26 H 1.08000 * 119.61887 * 0.04682 * 4 3 2 27 27 H 1.08002 * 120.05502 * 179.78192 * 5 4 3 28 28 H 0.97002 * 119.99923 * 180.02562 * 10 9 7 29 29 H 1.08000 * 124.32853 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3533 2.0281 -1.1947 5 6 2.8201 3.3251 -1.2234 6 6 2.9628 4.0441 -0.0257 7 6 3.4349 5.3717 -0.0499 8 1 3.1724 6.0528 0.7461 9 6 4.2439 5.8073 -1.1049 10 7 4.8409 4.9340 -1.8756 11 14 4.4717 7.6355 -1.4139 12 1 3.6954 8.4075 -0.4107 13 1 5.9114 7.9812 -1.2995 14 1 3.9889 7.9709 -2.7776 15 6 2.6296 3.4279 1.2113 16 16 2.6968 4.0525 2.8542 17 6 2.1026 2.5453 3.5235 18 6 1.8763 1.6551 2.5759 19 9 1.4131 0.4137 2.8397 20 6 2.1640 2.1135 1.2247 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 2.2411 1.4806 -2.1189 27 1 3.0716 3.7887 -2.1659 28 1 5.4021 5.2361 -2.6069 29 1 1.9422 2.3678 4.5767 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396316530.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:48 Heat of formation + Delta-G solvation = -38.929310 kcal Electronic energy + Delta-G solvation = -15706.634822 eV Core-core repulsion = 13019.977521 eV Total energy + Delta-G solvation = -2686.657301 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.78010 -39.96343 -36.44472 -35.46200 -33.86079 -30.97986 -29.70513 -27.21405 -24.47465 -23.83969 -21.97890 -21.63684 -19.53677 -17.77723 -17.44565 -16.88375 -16.68140 -16.54378 -15.88786 -15.47464 -14.87287 -14.50926 -14.20188 -14.07935 -13.78846 -13.20972 -13.04619 -12.97714 -12.82106 -12.59391 -12.23002 -12.01720 -11.92493 -11.57662 -11.48559 -11.12409 -11.01398 -9.91897 -9.23437 -8.76707 -8.43246 -6.35585 0.02605 0.76344 0.84368 1.30576 1.33284 1.39225 1.53356 1.58815 2.17866 2.63114 3.34534 3.50133 3.96383 4.19986 4.26928 4.49301 4.63865 4.66530 4.74524 4.89939 4.98657 5.08675 5.09878 5.19744 5.39526 5.40678 5.50667 5.71690 5.87405 6.07977 6.16968 6.53247 6.76852 6.82688 8.23626 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.008272 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.885124 B = 3384.113516 C = 4251.105451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 C -0.171 4.171 4 C -0.087 4.087 5 C -0.182 4.182 6 C 0.114 3.886 7 C -0.483 4.483 8 H 0.078 0.922 9 C 0.041 3.959 10 N -0.812 5.812 11 Si 0.981 3.019 12 H -0.258 1.258 13 H -0.265 1.265 14 H -0.261 1.261 15 C -0.232 4.232 16 S 0.105 5.895 17 C -0.245 4.245 18 C 0.077 3.923 19 F -0.130 7.130 20 C -0.085 4.085 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.293 0.707 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 -2.583 3.387 5.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 C -0.175 4.175 4 C -0.106 4.106 5 C -0.206 4.206 6 C 0.109 3.891 7 C -0.512 4.512 8 H 0.096 0.904 9 C -0.176 4.176 10 N -0.437 5.437 11 Si 0.801 3.199 12 H -0.181 1.181 13 H -0.189 1.189 14 H -0.185 1.185 15 C -0.347 4.347 16 S 0.367 5.633 17 C -0.380 4.380 18 C 0.044 3.956 19 F -0.109 7.109 20 C -0.092 4.092 21 H 0.070 0.930 22 H 0.091 0.909 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.139 0.861 27 H 0.131 0.869 28 H 0.104 0.896 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.067 -1.301 3.918 5.143 hybrid contribution -0.140 -0.801 -0.825 1.159 sum -3.207 -2.102 3.092 4.926 Atomic orbital electron populations 1.21656 0.94735 1.01708 1.00949 1.20307 0.96329 0.91856 1.01830 1.19397 1.10169 0.97386 0.90532 1.20679 0.98355 0.94951 0.96653 1.21196 1.06397 0.95468 0.97495 1.17273 0.89576 0.93456 0.88803 1.19692 1.27499 0.96209 1.07790 0.90400 1.26713 0.92523 1.04712 0.93663 1.69875 1.20903 1.38305 1.14620 0.85168 0.79075 0.76195 0.79467 1.18142 1.18924 1.18548 1.22721 1.16774 0.97522 0.97700 1.83382 1.70649 1.12444 0.96793 1.25138 1.10377 0.98355 1.04092 1.17422 1.04382 0.81530 0.92296 1.91399 1.86589 1.38731 1.94170 1.18903 1.03943 0.94044 0.92348 0.93036 0.90923 0.94528 0.90905 0.92381 0.86126 0.86851 0.89617 0.78354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.89 71.98 0.71 -3.39 15 2 C -0.07 -2.31 5.53 29.84 0.16 -2.14 15 3 C -0.17 -7.44 5.21 -19.21 -0.10 -7.54 15 4 C -0.09 -3.94 9.58 22.08 0.21 -3.73 15 5 C -0.18 -9.30 8.67 22.72 0.20 -9.10 15 6 C 0.11 6.04 5.59 -21.12 -0.12 5.92 15 7 C -0.48 -25.04 8.82 23.33 0.21 -24.83 15 8 H 0.08 3.94 7.76 -2.91 -0.02 3.92 15 9 C 0.04 1.96 5.13 85.24 0.44 2.40 15 10 N -0.81 -40.46 10.99 21.82 0.24 -40.22 15 11 Si 0.98 36.48 29.59 68.60 2.03 38.51 15 12 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 13 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 14 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 15 C -0.23 -11.36 6.36 23.54 0.15 -11.21 15 16 S 0.11 4.24 22.83 -56.49 -1.29 2.95 15 17 C -0.24 -8.72 11.02 66.93 0.74 -7.99 15 18 C 0.08 3.09 7.41 23.27 0.17 3.26 15 19 F -0.13 -4.81 15.16 44.97 0.68 -4.13 15 20 C -0.09 -3.92 5.97 -20.34 -0.12 -4.04 15 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 23 H 0.04 1.21 8.02 -2.39 -0.02 1.19 15 24 H 0.07 2.29 8.03 -2.39 -0.02 2.27 15 25 H 0.06 2.05 6.51 -2.39 -0.02 2.03 15 26 H 0.12 4.72 8.05 -2.91 -0.02 4.69 15 27 H 0.11 5.93 6.19 -2.91 -0.02 5.91 15 28 H 0.29 13.04 8.30 -92.71 -0.77 12.27 15 29 H 0.20 5.38 8.06 -2.91 -0.02 5.36 15 Total: -1.00 -55.87 266.27 5.48 -50.39 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.17 Total: 14.89 kcal Atomic # 6 Polarization: -65.04 SS G_CDS: 2.65 Total: -62.39 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.24 Total: -40.22 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.68 Total: -4.13 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.29 Total: 2.95 kcal Total: -55.87 5.48 -50.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316530.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.463 kcal (2) G-P(sol) polarization free energy of solvation -55.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds