Wall clock time and date at job start Mon Mar 30 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.46999 * 2 1 4 4 C 1.35884 * 119.74538 * 264.97376 * 3 2 1 5 5 C 1.39194 * 120.62359 * 180.02562 * 4 3 2 6 6 F 1.35098 * 119.91040 * 180.02562 * 5 4 3 7 7 C 1.37967 * 120.17046 * 359.97438 * 5 4 3 8 8 C 1.39525 * 120.27276 * 0.02562 * 7 5 4 9 9 S 1.75985 * 130.24692 * 180.34479 * 8 7 5 10 10 C 1.75461 * 91.78667 * 180.02562 * 9 8 7 11 11 C 1.39891 * 124.82359 * 179.91890 * 10 9 8 12 12 H 1.07998 * 120.00327 * 190.35251 * 11 10 9 13 13 C 1.40156 * 120.00243 * 10.35317 * 11 10 9 14 14 N 1.30776 * 120.00574 * 175.02662 * 13 11 10 15 15 Si 1.86803 * 119.99724 * 355.02534 * 13 11 10 16 16 H 1.48498 * 109.47390 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47256 * 300.00202 * 15 13 11 18 18 H 1.48494 * 109.47277 * 60.00075 * 15 13 11 19 19 C 1.36962 * 110.35028 * 359.64894 * 10 9 8 20 20 C 1.39768 * 115.03503 * 0.26971 * 19 10 9 21 21 H 1.09005 * 109.47247 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47434 * 300.00014 * 1 2 3 23 23 H 1.09006 * 109.46797 * 60.00135 * 1 2 3 24 24 H 1.09005 * 109.47182 * 239.99593 * 2 1 3 25 25 H 1.09007 * 109.46610 * 120.00377 * 2 1 3 26 26 H 1.07995 * 119.69118 * 359.97438 * 4 3 2 27 27 H 1.08007 * 119.86188 * 180.02562 * 7 5 4 28 28 H 0.97010 * 119.99826 * 0.08295 * 14 13 11 29 29 H 1.07998 * 122.47744 * 180.24423 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3544 2.0219 -1.1753 5 6 2.8206 3.3333 -1.1965 6 9 3.1362 3.9172 -2.3732 7 6 2.9601 4.0387 -0.0190 8 6 2.6359 3.4432 1.2004 9 16 2.7035 4.0904 2.8355 10 6 2.1153 2.5836 3.5152 11 6 1.9052 2.3503 4.8784 12 1 1.7025 1.3495 5.2301 13 6 1.9576 3.4154 5.7879 14 7 1.6658 3.2153 7.0469 15 14 2.4444 5.1210 5.2017 16 1 2.4238 6.0634 6.3491 17 1 3.8118 5.0745 4.6244 18 1 1.4851 5.5809 4.1657 19 6 1.8853 1.6702 2.5208 20 6 2.1656 2.1205 1.2277 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 2.2486 1.4769 -2.1016 27 1 3.3219 5.0562 -0.0413 28 1 1.4142 2.3294 7.3516 29 1 1.5152 0.6756 2.7212 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396316833.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:38 Heat of formation + Delta-G solvation = -47.224787 kcal Electronic energy + Delta-G solvation = -15449.518627 eV Core-core repulsion = 12762.501607 eV Total energy + Delta-G solvation = -2687.017020 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.07014 -38.68623 -35.11020 -33.53144 -33.08039 -29.47325 -28.70050 -25.14506 -23.35992 -22.41224 -20.41304 -19.24498 -18.98364 -16.81493 -15.86443 -15.65852 -14.88803 -14.84160 -14.40934 -13.79195 -13.47554 -13.39666 -12.88932 -12.83505 -12.35113 -12.17845 -11.87391 -11.44323 -11.24904 -11.13233 -10.88799 -10.52957 -10.27010 -10.08656 -9.90434 -9.66572 -8.90460 -8.58062 -7.87309 -7.59796 -6.73410 -4.82464 1.69115 2.00496 2.29557 2.86937 2.95112 3.01375 3.30838 3.45209 3.70612 4.38144 4.78821 5.06809 5.35907 5.49942 5.60468 5.78044 5.82883 6.02722 6.20208 6.25282 6.28633 6.51958 6.61045 6.75498 6.86021 6.95899 7.07491 7.12234 7.19130 7.45195 7.67976 7.80932 7.96805 8.19532 9.49036 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027123 B = 0.008313 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.099028 B = 3367.490675 C = 4291.068251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.095 4.095 4 C -0.126 4.126 5 C 0.008 3.992 6 F -0.159 7.159 7 C -0.084 4.084 8 C -0.206 4.206 9 S -0.024 6.024 10 C 0.065 3.935 11 C -0.427 4.427 12 H 0.099 0.901 13 C 0.049 3.951 14 N -0.782 5.782 15 Si 0.915 3.085 16 H -0.223 1.223 17 H -0.199 1.199 18 H -0.198 1.198 19 C -0.356 4.356 20 C 0.031 3.969 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.294 0.706 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -0.414 -6.278 6.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.097 4.097 4 C -0.147 4.147 5 C -0.012 4.012 6 F -0.139 7.139 7 C -0.107 4.107 8 C -0.318 4.318 9 S 0.231 5.769 10 C -0.053 4.053 11 C -0.461 4.461 12 H 0.117 0.883 13 C -0.176 4.176 14 N -0.402 5.402 15 Si 0.737 3.263 16 H -0.146 1.146 17 H -0.126 1.126 18 H -0.123 1.123 19 C -0.380 4.380 20 C 0.024 3.976 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.678 2.408 -5.071 5.654 hybrid contribution -0.586 -2.881 -1.172 3.165 sum 0.091 -0.473 -6.243 6.261 Atomic orbital electron populations 1.21722 0.95438 1.00716 1.02264 1.20326 0.95707 0.93014 1.01771 1.19132 1.03493 0.95924 0.91118 1.20124 1.02969 0.93633 0.97959 1.17004 1.10826 0.93153 0.80267 1.91362 1.91864 1.84650 1.45975 1.20057 1.01863 0.98982 0.89801 1.22431 1.13714 0.98514 0.97137 1.84604 1.74094 1.19026 0.99152 1.21286 0.94955 0.92277 0.96772 1.20447 1.36900 0.98284 0.90480 0.88346 1.27402 0.91614 1.05584 0.93026 1.70540 1.26241 1.27739 1.15710 0.84584 0.84081 0.75653 0.81990 1.14581 1.12575 1.12273 1.19486 1.26972 1.02069 0.89480 1.17908 0.94896 0.91559 0.93267 0.93234 0.92082 0.93125 0.92187 0.91198 0.86589 0.86662 0.89383 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.89 37.16 0.37 -1.78 15 2 C -0.07 -1.15 5.78 -27.89 -0.16 -1.31 15 3 C -0.09 -1.86 5.17 -104.05 -0.54 -2.40 15 4 C -0.13 -2.37 9.53 -40.07 -0.38 -2.75 15 5 C 0.01 0.17 7.30 -39.33 -0.29 -0.12 15 6 F -0.16 -3.03 17.26 2.25 0.04 -2.99 15 7 C -0.08 -1.72 10.04 -39.20 -0.39 -2.12 15 8 C -0.21 -4.63 6.47 -38.29 -0.25 -4.88 15 9 S -0.02 -0.53 15.28 -107.50 -1.64 -2.18 15 10 C 0.06 1.56 5.95 -39.43 -0.23 1.33 15 11 C -0.43 -10.44 9.70 -38.24 -0.37 -10.81 15 12 H 0.10 2.43 8.06 -52.49 -0.42 2.01 15 13 C 0.05 1.15 5.52 -17.28 -0.10 1.06 15 14 N -0.78 -18.70 13.65 55.56 0.76 -17.94 15 15 Si 0.91 18.34 24.49 -169.99 -4.16 14.18 15 16 H -0.22 -4.22 7.11 56.52 0.40 -3.81 15 17 H -0.20 -3.83 6.30 60.67 0.38 -3.45 15 18 H -0.20 -3.86 6.35 59.21 0.38 -3.48 15 19 C -0.36 -8.35 9.57 -39.47 -0.38 -8.73 15 20 C 0.03 0.70 5.82 -107.09 -0.62 0.08 15 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.06 0.85 8.02 -51.93 -0.42 0.43 15 25 H 0.07 1.16 7.37 -51.92 -0.38 0.78 15 26 H 0.12 1.88 8.03 -52.49 -0.42 1.45 15 27 H 0.12 2.14 8.06 -52.48 -0.42 1.72 15 28 H 0.29 6.75 8.72 -40.82 -0.36 6.39 15 29 H 0.11 2.58 7.49 -52.49 -0.39 2.19 15 LS Contribution 261.36 15.07 3.94 3.94 Total: -1.00 -24.78 261.36 -7.34 -32.12 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -2.92 Total: 5.31 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -3.34 Total: -32.44 kcal Atomic # 7 Polarization: -18.70 SS G_CDS: 0.76 Total: -17.94 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.16 Total: 14.18 kcal Atomic # 16 Polarization: -0.53 SS G_CDS: -1.64 Total: -2.18 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -24.78 -7.34 -32.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396316833.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.106 kcal (2) G-P(sol) polarization free energy of solvation -24.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds