Wall clock time and date at job start Mon Mar 30 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.46773 * 2 1 4 4 S 1.69975 * 124.02526 * 270.02162 * 3 2 1 5 5 C 1.75794 * 93.23355 * 179.97438 * 4 3 2 6 6 C 1.39838 * 130.16351 * 179.72151 * 5 4 3 7 7 C 1.37587 * 120.41171 * 179.86609 * 6 5 4 8 8 C 1.38848 * 120.16677 * 0.41211 * 7 6 5 9 9 F 1.35095 * 119.89725 * 179.78976 * 8 7 6 10 10 C 1.37633 * 120.20667 * 359.81844 * 8 7 6 11 11 C 1.39318 * 110.18451 * 0.02562 * 5 4 3 12 12 C 1.36448 * 124.02231 * 90.00355 * 3 2 1 13 13 C 1.40801 * 123.29586 * 359.97438 * 12 3 2 14 14 H 1.07998 * 120.00773 * 37.18718 * 13 12 3 15 15 C 1.39733 * 119.99507 * 217.19168 * 13 12 3 16 16 N 1.31062 * 120.00064 * 19.84263 * 15 13 12 17 17 Si 1.86801 * 119.99812 * 199.84230 * 15 13 12 18 18 H 1.48500 * 109.47253 * 90.00060 * 17 15 13 19 19 H 1.48493 * 109.46912 * 210.00075 * 17 15 13 20 20 H 1.48506 * 109.47133 * 329.99865 * 17 15 13 21 21 H 1.09005 * 109.47196 * 60.00068 * 1 2 3 22 22 H 1.08999 * 109.46883 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47274 * 299.99799 * 1 2 3 24 24 H 1.09003 * 109.47274 * 240.00200 * 2 1 3 25 25 H 1.08996 * 109.47273 * 120.00156 * 2 1 3 26 26 H 1.08009 * 119.78971 * 0.27797 * 6 5 4 27 27 H 1.08001 * 119.91593 * 180.19086 * 7 6 5 28 28 H 1.08003 * 119.85257 * 179.97438 * 10 8 7 29 29 H 0.96996 * 120.00370 * 183.36894 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3487 2.3178 -1.4087 5 6 2.8516 3.7417 -0.5088 6 6 3.2965 4.9864 -0.9651 7 6 3.6410 5.9736 -0.0708 8 6 3.5574 5.7379 1.2950 9 9 3.9011 6.7096 2.1683 10 6 3.1261 4.5171 1.7619 11 6 2.7669 3.4996 0.8606 12 6 2.2867 2.1406 1.1309 13 6 2.1053 1.6289 2.4300 14 1 2.3394 0.5959 2.6412 15 6 1.6224 2.4576 3.4462 16 7 0.9808 3.5596 3.1436 17 14 1.8914 1.9947 5.2358 18 1 3.1726 2.5766 5.7105 19 1 0.7731 2.5235 6.0573 20 1 1.9424 0.5159 5.3624 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.3638 5.1762 -2.0263 27 1 3.9807 6.9330 -0.4320 28 1 3.0636 4.3399 2.8255 29 1 0.6883 4.1595 3.8476 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317072.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:30 Heat of formation + Delta-G solvation = -27.668933 kcal Electronic energy + Delta-G solvation = -15801.725207 eV Core-core repulsion = 13115.556192 eV Total energy + Delta-G solvation = -2686.169015 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.14671 -38.44060 -35.32137 -33.11634 -31.46316 -29.74399 -28.05528 -25.83924 -23.10563 -21.99146 -20.91034 -19.37447 -17.26608 -16.49324 -15.60464 -15.46036 -15.05185 -14.85319 -14.40923 -13.49642 -13.14521 -12.97164 -12.75630 -12.45027 -12.20291 -11.89135 -11.45773 -11.28642 -11.13140 -10.93689 -10.65006 -10.41601 -10.10248 -9.82914 -9.65958 -9.46152 -8.94162 -8.51886 -7.34891 -6.91303 -6.50792 -4.39510 1.73634 1.93278 2.73869 2.92308 3.07573 3.09503 3.49958 3.59300 3.95250 4.44330 5.01141 5.07704 5.43502 5.61975 5.91355 6.04330 6.09086 6.17670 6.34972 6.56628 6.60140 6.67995 6.77916 6.89660 7.00507 7.05107 7.12206 7.14756 7.29830 7.69741 7.87565 8.29235 8.61038 8.81590 10.17108 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.013694 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.837846 B = 2044.235961 C = 3714.118772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.365 4.365 4 S 0.049 5.951 5 C -0.152 4.152 6 C -0.077 4.077 7 C -0.155 4.155 8 C 0.056 3.944 9 F -0.154 7.154 10 C -0.066 4.066 11 C -0.014 4.014 12 C 0.123 3.877 13 C -0.455 4.455 14 H 0.084 0.916 15 C 0.080 3.920 16 N -0.798 5.798 17 Si 0.897 3.103 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.261 1.261 21 H 0.042 0.958 22 H 0.036 0.964 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.134 0.866 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 0.558 -3.369 4.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 C -0.481 4.481 4 S 0.312 5.688 5 C -0.267 4.267 6 C -0.101 4.101 7 C -0.176 4.176 8 C 0.034 3.966 9 F -0.133 7.133 10 C -0.086 4.086 11 C -0.024 4.024 12 C 0.113 3.887 13 C -0.488 4.488 14 H 0.102 0.898 15 C -0.138 4.138 16 N -0.425 5.425 17 Si 0.721 3.279 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.185 1.185 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.152 0.848 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.790 0.319 -4.745 5.081 hybrid contribution 0.148 0.519 2.630 2.685 sum 1.939 0.838 -2.115 2.989 Atomic orbital electron populations 1.21706 0.96744 0.99215 1.01984 1.19382 0.94345 0.91190 0.99749 1.22765 1.27528 1.03370 0.94457 1.81715 1.73065 1.03406 1.10599 1.22663 1.07502 0.98827 0.97695 1.20103 1.00373 0.91001 0.98584 1.20643 1.05673 0.99916 0.91337 1.17396 1.05500 0.86836 0.86895 1.91402 1.90599 1.61975 1.69302 1.20973 0.96368 0.90244 1.01049 1.19284 0.97209 0.95547 0.90342 1.17179 0.90714 0.87317 0.93454 1.18847 1.39645 0.98248 0.92088 0.89819 1.25765 0.92500 0.94405 1.01082 1.69980 1.25850 1.10839 1.35794 0.86479 0.78913 0.80252 0.82243 1.19259 1.20338 1.18520 0.93837 0.94525 0.92045 0.94251 0.91801 0.86174 0.85726 0.84821 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.89 37.16 0.37 -2.26 15 2 C -0.01 -0.14 6.02 -27.88 -0.17 -0.31 15 3 C -0.37 -8.44 5.56 -34.95 -0.19 -8.63 15 4 S 0.05 1.02 22.89 -107.50 -2.46 -1.44 15 5 C -0.15 -3.35 6.44 -38.58 -0.25 -3.60 15 6 C -0.08 -1.46 10.06 -39.22 -0.39 -1.86 15 7 C -0.15 -2.87 10.01 -39.59 -0.40 -3.26 15 8 C 0.06 1.18 7.28 -39.58 -0.29 0.89 15 9 F -0.15 -3.11 17.26 2.25 0.04 -3.07 15 10 C -0.07 -1.55 8.40 -38.91 -0.33 -1.87 15 11 C -0.01 -0.34 5.56 -105.21 -0.58 -0.93 15 12 C 0.12 3.09 5.40 -106.18 -0.57 2.52 15 13 C -0.46 -11.48 8.45 -38.05 -0.32 -11.80 15 14 H 0.08 2.06 7.15 -52.49 -0.38 1.69 15 15 C 0.08 1.93 4.13 -17.32 -0.07 1.86 15 16 N -0.80 -20.12 10.67 55.54 0.59 -19.53 15 17 Si 0.90 18.38 29.61 -169.99 -5.03 13.35 15 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 21 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.06 1.31 7.06 -51.93 -0.37 0.94 15 26 H 0.12 1.88 8.06 -52.48 -0.42 1.46 15 27 H 0.12 1.89 8.06 -52.49 -0.42 1.47 15 28 H 0.13 3.24 5.98 -52.48 -0.31 2.93 15 29 H 0.28 6.59 8.30 -40.82 -0.34 6.25 15 LS Contribution 266.11 15.07 4.01 4.01 Total: -1.00 -25.91 266.11 -8.78 -34.69 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -2.73 Total: 1.26 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -3.20 Total: -29.26 kcal Atomic # 7 Polarization: -20.12 SS G_CDS: 0.59 Total: -19.53 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.46 Total: -1.44 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -25.91 -8.78 -34.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317072.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.019 kcal (2) G-P(sol) polarization free energy of solvation -25.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds