Wall clock time and date at job start Mon Mar 30 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.46773 * 2 1 4 4 S 1.69975 * 124.02526 * 270.02162 * 3 2 1 5 5 C 1.75794 * 93.23355 * 179.97438 * 4 3 2 6 6 C 1.39838 * 130.16351 * 179.72151 * 5 4 3 7 7 C 1.37587 * 120.41171 * 179.86609 * 6 5 4 8 8 C 1.38848 * 120.16677 * 0.41211 * 7 6 5 9 9 F 1.35095 * 119.89725 * 179.78976 * 8 7 6 10 10 C 1.37633 * 120.20667 * 359.81844 * 8 7 6 11 11 C 1.39318 * 110.18451 * 0.02562 * 5 4 3 12 12 C 1.36448 * 124.02231 * 90.00355 * 3 2 1 13 13 C 1.40801 * 123.29586 * 359.97438 * 12 3 2 14 14 H 1.07998 * 120.00773 * 37.18718 * 13 12 3 15 15 C 1.39733 * 119.99507 * 217.19168 * 13 12 3 16 16 N 1.31062 * 120.00064 * 19.84263 * 15 13 12 17 17 Si 1.86801 * 119.99812 * 199.84230 * 15 13 12 18 18 H 1.48500 * 109.47253 * 90.00060 * 17 15 13 19 19 H 1.48493 * 109.46912 * 210.00075 * 17 15 13 20 20 H 1.48506 * 109.47133 * 329.99865 * 17 15 13 21 21 H 1.09005 * 109.47196 * 60.00068 * 1 2 3 22 22 H 1.08999 * 109.46883 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47274 * 299.99799 * 1 2 3 24 24 H 1.09003 * 109.47274 * 240.00200 * 2 1 3 25 25 H 1.08996 * 109.47273 * 120.00156 * 2 1 3 26 26 H 1.08009 * 119.78971 * 0.27797 * 6 5 4 27 27 H 1.08001 * 119.91593 * 180.19086 * 7 6 5 28 28 H 1.08003 * 119.85257 * 179.97438 * 10 8 7 29 29 H 0.96996 * 120.00370 * 183.36894 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3487 2.3178 -1.4087 5 6 2.8516 3.7417 -0.5088 6 6 3.2965 4.9864 -0.9651 7 6 3.6410 5.9736 -0.0708 8 6 3.5574 5.7379 1.2950 9 9 3.9011 6.7096 2.1683 10 6 3.1261 4.5171 1.7619 11 6 2.7669 3.4996 0.8606 12 6 2.2867 2.1406 1.1309 13 6 2.1053 1.6289 2.4300 14 1 2.3394 0.5959 2.6412 15 6 1.6224 2.4576 3.4462 16 7 0.9808 3.5596 3.1436 17 14 1.8914 1.9947 5.2358 18 1 3.1726 2.5766 5.7105 19 1 0.7731 2.5235 6.0573 20 1 1.9424 0.5159 5.3624 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.3638 5.1762 -2.0263 27 1 3.9807 6.9330 -0.4320 28 1 3.0636 4.3399 2.8255 29 1 0.6883 4.1595 3.8476 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317072.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:30 Heat of formation + Delta-G solvation = -38.983395 kcal Electronic energy + Delta-G solvation = -15802.215839 eV Core-core repulsion = 13115.556192 eV Total energy + Delta-G solvation = -2686.659647 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.77498 -40.09636 -37.00908 -34.88218 -33.10463 -31.38139 -29.75470 -27.61010 -24.73279 -23.64453 -22.56228 -21.12850 -18.94453 -18.16519 -17.30004 -17.19826 -16.73193 -16.48278 -16.02411 -15.12438 -14.79309 -14.60314 -14.36701 -14.12797 -13.81557 -13.58279 -13.10849 -12.91326 -12.77613 -12.70442 -12.24700 -12.04055 -11.73050 -11.50588 -11.35200 -11.16553 -10.71902 -10.19551 -9.04380 -8.69390 -8.22595 -6.24566 0.07962 0.27722 1.08785 1.26141 1.36754 1.46735 1.78010 1.84958 2.22985 2.72927 3.25196 3.40483 3.90875 4.10480 4.32592 4.45355 4.51709 4.57759 4.74833 4.95337 5.02257 5.11041 5.20429 5.25013 5.30028 5.37430 5.42027 5.53825 5.58895 6.04272 6.09062 6.41909 6.79378 6.97192 8.38137 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.013694 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.837846 B = 2044.235961 C = 3714.118772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.011 4.011 3 C -0.375 4.375 4 S 0.094 5.906 5 C -0.174 4.174 6 C -0.068 4.068 7 C -0.141 4.141 8 C 0.052 3.948 9 F -0.151 7.151 10 C -0.091 4.091 11 C -0.048 4.048 12 C 0.086 3.914 13 C -0.483 4.483 14 H 0.076 0.924 15 C 0.047 3.953 16 N -0.830 5.830 17 Si 0.957 3.043 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.257 1.257 21 H 0.046 0.954 22 H 0.068 0.932 23 H 0.030 0.970 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.162 0.838 27 H 0.169 0.831 28 H 0.112 0.888 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 1.042 -4.926 5.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.050 4.050 3 C -0.491 4.491 4 S 0.358 5.642 5 C -0.289 4.289 6 C -0.090 4.090 7 C -0.161 4.161 8 C 0.030 3.970 9 F -0.130 7.130 10 C -0.112 4.112 11 C -0.057 4.057 12 C 0.076 3.924 13 C -0.517 4.517 14 H 0.094 0.906 15 C -0.167 4.167 16 N -0.457 5.457 17 Si 0.779 3.221 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.181 1.181 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.180 0.820 27 H 0.186 0.814 28 H 0.130 0.870 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.184 0.794 -6.314 6.728 hybrid contribution 0.052 0.383 2.982 3.007 sum 2.237 1.177 -3.332 4.182 Atomic orbital electron populations 1.21601 0.95631 1.00900 1.00596 1.19488 0.95263 0.89918 1.00364 1.23361 1.25724 1.04544 0.95482 1.81334 1.72287 1.02137 1.08452 1.23064 1.08162 1.00610 0.97083 1.20596 0.98267 0.89410 1.00776 1.21081 1.03794 1.01531 0.89739 1.17588 1.05111 0.86063 0.88219 1.91404 1.90498 1.61577 1.69545 1.20896 0.98453 0.91662 1.00151 1.19401 0.98871 0.95660 0.91802 1.17564 0.91952 0.88662 0.94178 1.18965 1.41186 0.98239 0.93287 0.90634 1.26376 0.91806 0.94201 1.04353 1.70032 1.27035 1.11876 1.36774 0.85561 0.78732 0.79978 0.77786 1.19134 1.19805 1.18115 0.93436 0.91332 0.95077 0.92003 0.92723 0.82006 0.81386 0.86969 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.89 71.98 0.71 -4.10 15 2 C -0.01 -0.44 6.02 29.85 0.18 -0.26 15 3 C -0.37 -17.34 5.56 25.27 0.14 -17.20 15 4 S 0.09 3.76 22.89 -56.49 -1.29 2.47 15 5 C -0.17 -7.45 6.44 22.92 0.15 -7.30 15 6 C -0.07 -2.33 10.06 22.50 0.23 -2.11 15 7 C -0.14 -4.75 10.01 22.26 0.22 -4.53 15 8 C 0.05 2.15 7.28 22.27 0.16 2.32 15 9 F -0.15 -5.97 17.26 44.97 0.78 -5.20 15 10 C -0.09 -4.36 8.40 22.70 0.19 -4.17 15 11 C -0.05 -2.36 5.56 -20.25 -0.11 -2.47 15 12 C 0.09 4.45 5.40 -20.87 -0.11 4.34 15 13 C -0.48 -25.41 8.45 23.26 0.20 -25.22 15 14 H 0.08 3.91 7.15 -2.91 -0.02 3.89 15 15 C 0.05 2.34 4.13 85.17 0.35 2.69 15 16 N -0.83 -43.47 10.67 21.80 0.23 -43.24 15 17 Si 0.96 38.95 29.61 68.60 2.03 40.98 15 18 H -0.27 -10.66 7.11 99.48 0.71 -9.96 15 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 20 H -0.26 -10.17 7.11 99.48 0.71 -9.47 15 21 H 0.05 1.69 8.14 -2.38 -0.02 1.67 15 22 H 0.07 2.07 8.14 -2.39 -0.02 2.06 15 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 15 24 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 25 H 0.05 2.26 7.06 -2.39 -0.02 2.25 15 26 H 0.16 4.21 8.06 -2.91 -0.02 4.19 15 27 H 0.17 4.21 8.06 -2.91 -0.02 4.19 15 28 H 0.11 5.73 5.98 -2.91 -0.02 5.71 15 29 H 0.28 13.78 8.30 -92.71 -0.77 13.01 15 Total: -1.00 -57.29 266.11 5.22 -52.07 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.17 Total: 10.93 kcal Atomic # 6 Polarization: -60.31 SS G_CDS: 2.30 Total: -58.01 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.23 Total: -43.24 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.78 Total: -5.20 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.29 Total: 2.47 kcal Total: -57.29 5.22 -52.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317072.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.083 kcal (2) G-P(sol) polarization free energy of solvation -57.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds