Wall clock time and date at job start Mon Mar 30 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46526 * 2 1 4 4 S 1.69984 * 124.02176 * 270.01737 * 3 2 1 5 5 C 1.75783 * 93.22854 * 180.02562 * 4 3 2 6 6 C 1.39305 * 110.19062 * 0.02562 * 5 4 3 7 7 C 1.40607 * 119.25471 * 180.02562 * 6 5 4 8 8 C 1.37460 * 120.36422 * 359.97353 * 7 6 5 9 9 C 1.38613 * 120.28248 * 0.02562 * 8 7 6 10 10 C 1.37858 * 120.16278 * 0.02562 * 9 8 7 11 11 F 1.35101 * 119.83858 * 179.97438 * 10 9 8 12 12 C 1.36445 * 124.02949 * 89.72997 * 3 2 1 13 13 C 1.40804 * 123.29807 * 359.97438 * 12 3 2 14 14 H 1.08006 * 119.99873 * 318.68626 * 13 12 3 15 15 C 1.39713 * 120.00098 * 138.68145 * 13 12 3 16 16 N 1.31075 * 119.99990 * 155.81415 * 15 13 12 17 17 Si 1.86802 * 119.99956 * 335.82097 * 15 13 12 18 18 H 1.48492 * 109.47571 * 95.35934 * 17 15 13 19 19 H 1.48509 * 109.46973 * 215.36259 * 17 15 13 20 20 H 1.48498 * 109.46920 * 335.35658 * 17 15 13 21 21 H 1.08999 * 109.47205 * 60.00764 * 1 2 3 22 22 H 1.09001 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47512 * 299.99953 * 1 2 3 24 24 H 1.08999 * 109.47205 * 119.99236 * 2 1 3 25 25 H 1.08997 * 109.47324 * 240.00392 * 2 1 3 26 26 H 1.08002 * 119.82419 * 179.97438 * 7 6 5 27 27 H 1.08001 * 119.85973 * 180.02562 * 8 7 6 28 28 H 1.08001 * 119.91799 * 179.97438 * 9 8 7 29 29 H 0.97000 * 119.99925 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3487 2.3178 -1.4089 5 6 2.8529 3.7411 -0.5090 6 6 2.7687 3.4990 0.8603 7 6 3.1288 4.5165 1.7614 8 6 3.5596 5.7362 1.2963 9 6 3.6427 5.9748 -0.0666 10 6 3.2928 4.9895 -0.9650 11 9 3.3758 5.2293 -2.2919 12 6 2.2816 2.1426 1.1308 13 6 2.0945 1.6331 2.4300 14 1 1.2256 1.0321 2.6544 15 6 3.0328 1.9049 3.4288 16 7 2.6772 1.8672 4.6898 17 14 4.7941 2.3221 2.9671 18 1 4.9568 3.7973 2.9176 19 1 5.7192 1.7559 3.9816 20 1 5.1067 1.7447 1.6352 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 3.0666 4.3389 2.8249 27 1 3.8346 6.5118 1.9957 28 1 3.9815 6.9354 -0.4256 29 1 3.3286 2.0563 5.3833 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317134.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:32 Heat of formation + Delta-G solvation = -22.153848 kcal Electronic energy + Delta-G solvation = -15886.293320 eV Core-core repulsion = 13200.363458 eV Total energy + Delta-G solvation = -2685.929863 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.41010 -38.75672 -35.46259 -33.12924 -31.92785 -29.91453 -28.29969 -26.08229 -23.14557 -22.40588 -20.84804 -19.42538 -17.67511 -16.57284 -16.04125 -15.62593 -15.18839 -14.88923 -14.47108 -14.09634 -13.22799 -12.98292 -12.92978 -12.65516 -12.43592 -11.97261 -11.57216 -11.52357 -11.18786 -10.90329 -10.53327 -10.39344 -10.20624 -10.05568 -9.81382 -9.66995 -9.19977 -8.36555 -7.66334 -6.96423 -6.79507 -4.44155 1.44019 1.65805 2.46346 2.88608 3.12154 3.20546 3.34242 3.40394 3.94926 4.18457 4.72403 4.92958 5.25274 5.42998 5.72247 5.78638 5.92877 5.98125 6.21596 6.23183 6.46256 6.51395 6.59901 6.73023 6.81767 6.92260 6.99622 7.02308 7.18267 7.42560 7.81190 8.27196 8.48294 8.76378 10.07221 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.013628 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.244753 B = 2054.168427 C = 3264.140463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.014 4.014 3 C -0.353 4.353 4 S 0.082 5.918 5 C -0.175 4.175 6 C -0.047 4.047 7 C -0.080 4.080 8 C -0.122 4.122 9 C -0.150 4.150 10 C 0.108 3.892 11 F -0.146 7.146 12 C 0.081 3.919 13 C -0.444 4.444 14 H 0.096 0.904 15 C 0.094 3.906 16 N -0.808 5.808 17 Si 0.869 3.131 18 H -0.249 1.249 19 H -0.282 1.282 20 H -0.250 1.250 21 H 0.043 0.957 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 3.641 -5.295 6.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.053 4.053 3 C -0.469 4.469 4 S 0.348 5.652 5 C -0.291 4.291 6 C -0.058 4.058 7 C -0.099 4.099 8 C -0.144 4.144 9 C -0.171 4.171 10 C 0.083 3.917 11 F -0.124 7.124 12 C 0.072 3.928 13 C -0.476 4.476 14 H 0.114 0.886 15 C -0.124 4.124 16 N -0.433 5.433 17 Si 0.694 3.306 18 H -0.173 1.173 19 H -0.209 1.209 20 H -0.174 1.174 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.541 3.184 -6.587 7.477 hybrid contribution 0.901 0.587 1.335 1.714 sum 2.442 3.771 -5.253 6.912 Atomic orbital electron populations 1.21768 0.96821 0.99775 1.01627 1.19466 0.94080 0.90998 1.00764 1.22989 1.28478 1.01016 0.94429 1.81945 1.70314 1.03122 1.09830 1.22676 1.09489 0.98113 0.98799 1.19632 0.99729 0.95911 0.90481 1.21153 0.96793 0.91915 1.00086 1.20601 1.02242 0.97215 0.94299 1.20732 1.04802 0.98384 0.93215 1.16934 1.04642 0.93019 0.77057 1.91431 1.94344 1.94779 1.31878 1.17351 0.93544 0.87655 0.94260 1.18650 1.08635 1.30017 0.90300 0.88642 1.25909 1.00748 0.91640 0.94126 1.69865 1.36407 1.36098 1.00980 0.87077 0.82330 0.80701 0.80536 1.17343 1.20851 1.17353 0.93739 0.93974 0.92469 0.90841 0.93707 0.85063 0.85532 0.85207 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.89 37.16 0.37 -2.19 15 2 C -0.01 -0.27 6.02 -27.88 -0.17 -0.44 15 3 C -0.35 -8.01 5.56 -34.95 -0.19 -8.20 15 4 S 0.08 1.73 22.89 -107.50 -2.46 -0.74 15 5 C -0.17 -3.84 6.42 -38.53 -0.25 -4.09 15 6 C -0.05 -1.10 4.80 -105.22 -0.50 -1.60 15 7 C -0.08 -1.69 6.61 -38.97 -0.26 -1.95 15 8 C -0.12 -2.16 10.01 -39.73 -0.40 -2.56 15 9 C -0.15 -2.59 10.00 -39.58 -0.40 -2.99 15 10 C 0.11 2.14 7.32 -39.06 -0.29 1.85 15 11 F -0.15 -2.74 17.26 2.25 0.04 -2.71 15 12 C 0.08 2.00 4.69 -106.19 -0.50 1.50 15 13 C -0.44 -11.49 8.60 -38.06 -0.33 -11.81 15 14 H 0.10 2.61 8.06 -52.48 -0.42 2.19 15 15 C 0.09 2.36 4.54 -17.32 -0.08 2.28 15 16 N -0.81 -20.68 13.94 55.54 0.77 -19.91 15 17 Si 0.87 19.59 24.39 -169.99 -4.15 15.44 15 18 H -0.25 -5.23 5.54 56.52 0.31 -4.92 15 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 20 H -0.25 -6.00 7.11 56.52 0.40 -5.60 15 21 H 0.04 0.77 8.14 -51.93 -0.42 0.34 15 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 15 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.07 1.54 7.56 -51.93 -0.39 1.14 15 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.13 2.83 5.64 -52.49 -0.30 2.54 15 27 H 0.13 1.81 8.06 -52.49 -0.42 1.39 15 28 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 29 H 0.28 6.59 8.30 -40.82 -0.34 6.25 15 LS Contribution 260.96 15.07 3.93 3.93 Total: -1.00 -26.22 260.96 -7.72 -33.94 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -2.87 Total: 0.22 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -2.99 Total: -30.19 kcal Atomic # 7 Polarization: -20.68 SS G_CDS: 0.77 Total: -19.91 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.15 Total: 15.44 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.46 Total: -0.74 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.22 -7.72 -33.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317134.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.787 kcal (2) G-P(sol) polarization free energy of solvation -26.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds