Wall clock time and date at job start Mon Mar 30 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46526 * 2 1 4 4 S 1.69984 * 124.02176 * 270.01737 * 3 2 1 5 5 C 1.75783 * 93.22854 * 180.02562 * 4 3 2 6 6 C 1.39305 * 110.19062 * 0.02562 * 5 4 3 7 7 C 1.40607 * 119.25471 * 180.02562 * 6 5 4 8 8 C 1.37460 * 120.36422 * 359.97353 * 7 6 5 9 9 C 1.38613 * 120.28248 * 0.02562 * 8 7 6 10 10 C 1.37858 * 120.16278 * 0.02562 * 9 8 7 11 11 F 1.35101 * 119.83858 * 179.97438 * 10 9 8 12 12 C 1.36445 * 124.02949 * 89.72997 * 3 2 1 13 13 C 1.40804 * 123.29807 * 359.97438 * 12 3 2 14 14 H 1.08006 * 119.99873 * 318.68626 * 13 12 3 15 15 C 1.39713 * 120.00098 * 138.68145 * 13 12 3 16 16 N 1.31075 * 119.99990 * 155.81415 * 15 13 12 17 17 Si 1.86802 * 119.99956 * 335.82097 * 15 13 12 18 18 H 1.48492 * 109.47571 * 95.35934 * 17 15 13 19 19 H 1.48509 * 109.46973 * 215.36259 * 17 15 13 20 20 H 1.48498 * 109.46920 * 335.35658 * 17 15 13 21 21 H 1.08999 * 109.47205 * 60.00764 * 1 2 3 22 22 H 1.09001 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47512 * 299.99953 * 1 2 3 24 24 H 1.08999 * 109.47205 * 119.99236 * 2 1 3 25 25 H 1.08997 * 109.47324 * 240.00392 * 2 1 3 26 26 H 1.08002 * 119.82419 * 179.97438 * 7 6 5 27 27 H 1.08001 * 119.85973 * 180.02562 * 8 7 6 28 28 H 1.08001 * 119.91799 * 179.97438 * 9 8 7 29 29 H 0.97000 * 119.99925 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3487 2.3178 -1.4089 5 6 2.8529 3.7411 -0.5090 6 6 2.7687 3.4990 0.8603 7 6 3.1288 4.5165 1.7614 8 6 3.5596 5.7362 1.2963 9 6 3.6427 5.9748 -0.0666 10 6 3.2928 4.9895 -0.9650 11 9 3.3758 5.2293 -2.2919 12 6 2.2816 2.1426 1.1308 13 6 2.0945 1.6331 2.4300 14 1 1.2256 1.0321 2.6544 15 6 3.0328 1.9049 3.4288 16 7 2.6772 1.8672 4.6898 17 14 4.7941 2.3221 2.9671 18 1 4.9568 3.7973 2.9176 19 1 5.7192 1.7559 3.9816 20 1 5.1067 1.7447 1.6352 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 3.0666 4.3389 2.8249 27 1 3.8346 6.5118 1.9957 28 1 3.9815 6.9354 -0.4256 29 1 3.3286 2.0563 5.3833 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317134.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:32 Heat of formation + Delta-G solvation = -35.374025 kcal Electronic energy + Delta-G solvation = -15886.866590 eV Core-core repulsion = 13200.363458 eV Total energy + Delta-G solvation = -2686.503133 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.89969 -40.35597 -37.13390 -34.95724 -33.51616 -31.48379 -29.94205 -27.85856 -24.73805 -23.95237 -22.46540 -21.21230 -19.30665 -18.27370 -17.67126 -17.20296 -16.71546 -16.57161 -16.13677 -15.61361 -14.87510 -14.77393 -14.47081 -14.27743 -14.00326 -13.55501 -13.33241 -13.11562 -12.85367 -12.51495 -12.15843 -12.13486 -11.86632 -11.68871 -11.44039 -11.39774 -11.02100 -10.01842 -9.30088 -8.83880 -8.49590 -6.35252 -0.15291 0.10555 0.82637 1.13378 1.29325 1.40957 1.57602 1.63584 2.13101 2.55258 3.04262 3.24914 3.80416 3.97399 4.13254 4.35820 4.36666 4.44445 4.64041 4.73034 4.95919 5.00140 5.05859 5.17549 5.20754 5.26167 5.40259 5.42914 5.49377 5.90710 6.01969 6.26821 6.62365 6.85714 8.25313 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.013628 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.244753 B = 2054.168427 C = 3264.140463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.019 4.019 3 C -0.353 4.353 4 S 0.107 5.893 5 C -0.199 4.199 6 C -0.074 4.074 7 C -0.104 4.104 8 C -0.103 4.103 9 C -0.130 4.130 10 C 0.101 3.899 11 F -0.141 7.141 12 C 0.055 3.945 13 C -0.471 4.471 14 H 0.061 0.939 15 C 0.069 3.931 16 N -0.847 5.847 17 Si 0.914 3.086 18 H -0.221 1.221 19 H -0.274 1.274 20 H -0.276 1.276 21 H 0.053 0.947 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.121 0.879 27 H 0.171 0.829 28 H 0.177 0.823 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 5.778 -6.738 9.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.059 4.059 3 C -0.469 4.469 4 S 0.372 5.628 5 C -0.315 4.315 6 C -0.084 4.084 7 C -0.124 4.124 8 C -0.124 4.124 9 C -0.151 4.151 10 C 0.076 3.924 11 F -0.119 7.119 12 C 0.046 3.954 13 C -0.504 4.504 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.474 5.474 17 Si 0.737 3.263 18 H -0.144 1.144 19 H -0.200 1.200 20 H -0.201 1.201 21 H 0.072 0.928 22 H 0.089 0.911 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.139 0.861 27 H 0.188 0.812 28 H 0.194 0.806 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.724 5.340 -8.030 10.020 hybrid contribution 0.481 -0.034 1.615 1.685 sum 3.205 5.305 -6.415 8.920 Atomic orbital electron populations 1.21663 0.95118 1.01478 1.00798 1.19592 0.95569 0.89784 1.00951 1.23555 1.25816 1.02200 0.95337 1.81679 1.70209 1.02596 1.08278 1.22927 1.10699 0.99396 0.98526 1.19666 1.01410 0.95735 0.91611 1.21281 0.98464 0.93170 0.99443 1.21109 0.99347 0.96454 0.95460 1.21254 1.02081 0.99301 0.92435 1.17160 1.04670 0.92785 0.77762 1.91446 1.94287 1.94636 1.31564 1.17559 0.94868 0.88955 0.94065 1.18526 1.08553 1.31390 0.91891 0.92104 1.26356 1.02994 0.91401 0.93807 1.69884 1.37627 1.38198 1.01709 0.86410 0.79026 0.82082 0.78784 1.14386 1.19987 1.20071 0.92838 0.91064 0.94880 0.92538 0.91532 0.86145 0.81182 0.80586 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 9.89 71.98 0.71 -4.06 15 2 C -0.02 -0.79 6.02 29.85 0.18 -0.61 15 3 C -0.35 -16.20 5.56 25.27 0.14 -16.06 15 4 S 0.11 4.38 22.89 -56.49 -1.29 3.09 15 5 C -0.20 -8.49 6.42 22.95 0.15 -8.34 15 6 C -0.07 -3.42 4.80 -20.25 -0.10 -3.52 15 7 C -0.10 -4.22 6.61 22.66 0.15 -4.07 15 8 C -0.10 -3.18 10.01 22.18 0.22 -2.96 15 9 C -0.13 -3.83 10.00 22.27 0.22 -3.60 15 10 C 0.10 3.66 7.32 22.61 0.17 3.83 15 11 F -0.14 -4.83 17.26 44.97 0.78 -4.05 15 12 C 0.06 2.79 4.69 -20.88 -0.10 2.69 15 13 C -0.47 -25.67 8.60 23.25 0.20 -25.47 15 14 H 0.06 3.61 8.06 -2.91 -0.02 3.58 15 15 C 0.07 3.59 4.54 85.16 0.39 3.98 15 16 N -0.85 -44.91 13.94 21.80 0.30 -44.61 15 17 Si 0.91 40.67 24.39 68.60 1.67 42.34 15 18 H -0.22 -8.70 5.54 99.48 0.55 -8.15 15 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 20 H -0.28 -13.29 7.11 99.48 0.71 -12.59 15 21 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 24 H 0.06 2.46 7.56 -2.39 -0.02 2.44 15 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 26 H 0.12 5.11 5.64 -2.91 -0.02 5.10 15 27 H 0.17 3.80 8.06 -2.91 -0.02 3.78 15 28 H 0.18 3.60 8.06 -2.91 -0.02 3.58 15 29 H 0.29 13.90 8.30 -92.71 -0.77 13.13 15 Total: -1.00 -58.73 260.96 4.81 -53.92 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.01 Total: 7.50 kcal Atomic # 6 Polarization: -60.52 SS G_CDS: 2.33 Total: -58.19 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.30 Total: -44.61 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.78 Total: -4.05 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.67 Total: 42.34 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.29 Total: 3.09 kcal Total: -58.73 4.81 -53.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317134.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.550 kcal (2) G-P(sol) polarization free energy of solvation -58.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds