Wall clock time and date at job start Mon Mar 30 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50704 * 109.47298 * 2 1 4 4 C 1.32496 * 122.05674 * 265.02470 * 3 2 1 5 5 S 1.75477 * 110.84707 * 179.97438 * 4 3 2 6 6 C 1.76059 * 91.55214 * 0.02562 * 5 4 3 7 7 C 1.38833 * 130.42831 * 180.29269 * 6 5 4 8 8 C 1.40350 * 120.00529 * 180.19410 * 7 6 5 9 9 C 1.40956 * 120.21492 * 179.76735 * 8 7 6 10 10 H 1.08000 * 119.99679 * 323.56585 * 9 8 7 11 11 C 1.39883 * 120.00050 * 143.56029 * 9 8 7 12 12 N 1.30892 * 120.00196 * 321.05069 * 11 9 8 13 13 Si 1.86802 * 119.99811 * 141.04689 * 11 9 8 14 14 H 1.48504 * 109.47114 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 300.00098 * 13 11 9 16 16 H 1.48493 * 109.47045 * 60.00210 * 13 11 9 17 17 C 1.41479 * 119.56964 * 359.48848 * 8 7 6 18 18 F 1.35098 * 119.83380 * 180.22877 * 17 8 7 19 19 C 1.35412 * 120.32295 * 0.25431 * 17 8 7 20 20 C 1.40365 * 109.36401 * 359.97438 * 6 5 4 21 21 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47280 * 300.00180 * 1 2 3 23 23 H 1.09005 * 109.47142 * 60.00096 * 1 2 3 24 24 H 1.09008 * 109.47349 * 240.00363 * 2 1 3 25 25 H 1.08997 * 109.47394 * 119.99697 * 2 1 3 26 26 H 1.08004 * 124.57726 * 0.02562 * 4 3 2 27 27 H 1.07997 * 119.99782 * 359.95828 * 7 6 5 28 28 H 0.96999 * 120.00026 * 354.23290 * 12 11 9 29 29 H 1.08001 * 119.57360 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3586 2.0514 -1.1187 5 16 2.9038 3.6843 -0.7789 6 6 2.6639 3.4559 0.9502 7 6 2.8685 4.3284 2.0106 8 6 2.6056 3.9102 3.3243 9 6 2.8165 4.7908 4.4046 10 1 3.6486 5.4790 4.3857 11 6 1.9480 4.7733 5.5010 12 7 0.6625 4.6108 5.3151 13 14 2.6227 4.9817 7.2304 14 1 1.5058 4.9259 8.2075 15 1 3.5880 3.8909 7.5199 16 1 3.3107 6.2932 7.3386 17 6 2.1220 2.6011 3.5568 18 9 1.8628 2.1946 4.8188 19 6 1.9182 1.7536 2.5205 20 6 2.1834 2.1583 1.1860 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 2.2965 1.6190 -2.1065 27 1 3.2336 5.3276 1.8248 28 1 0.3019 4.5865 4.4150 29 1 1.5491 0.7568 2.7119 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396317161.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:41 Heat of formation + Delta-G solvation = -33.821362 kcal Electronic energy + Delta-G solvation = -15692.355177 eV Core-core repulsion = 13005.919373 eV Total energy + Delta-G solvation = -2686.435804 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.51816 -38.59366 -35.75805 -33.66777 -31.26102 -29.80394 -28.40706 -25.16894 -23.80530 -21.77268 -21.28917 -18.81992 -18.46420 -16.61365 -15.67235 -15.45752 -14.46674 -14.36577 -14.05000 -13.92612 -13.72218 -13.00480 -12.71774 -12.53938 -12.06651 -11.97696 -11.84781 -11.57317 -11.26857 -11.17120 -10.66901 -10.50948 -10.39611 -10.00280 -9.74884 -9.69274 -8.93992 -8.61714 -7.69839 -7.39939 -6.85617 -4.65924 1.67543 2.37988 2.48946 2.87931 2.95561 3.08933 3.26574 3.33409 3.86837 4.24506 4.95610 5.30759 5.31589 5.51806 5.66783 5.72431 5.87093 5.96453 6.11312 6.18443 6.40443 6.46710 6.54629 6.70202 6.86723 6.98933 7.27754 7.39096 7.43445 7.49377 7.72199 7.86250 8.35805 8.45344 9.68503 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.007312 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.114699 B = 3828.213761 C = 4453.625820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C -0.036 4.036 4 C -0.263 4.263 5 S 0.003 5.997 6 C -0.062 4.062 7 C -0.205 4.205 8 C 0.087 3.913 9 C -0.509 4.509 10 H 0.092 0.908 11 C 0.052 3.948 12 N -0.748 5.748 13 Si 1.060 2.940 14 H -0.271 1.271 15 H -0.269 1.269 16 H -0.273 1.273 17 C 0.021 3.979 18 F -0.147 7.147 19 C -0.085 4.085 20 C -0.190 4.190 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.146 0.854 27 H 0.107 0.893 28 H 0.297 0.703 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.752 -4.078 -4.744 6.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.048 4.048 4 C -0.396 4.396 5 S 0.265 5.735 6 C -0.176 4.176 7 C -0.232 4.232 8 C 0.080 3.920 9 C -0.535 4.535 10 H 0.110 0.890 11 C -0.176 4.176 12 N -0.366 5.366 13 Si 0.882 3.118 14 H -0.195 1.195 15 H -0.194 1.194 16 H -0.198 1.198 17 C 0.001 3.999 18 F -0.126 7.126 19 C -0.107 4.107 20 C -0.195 4.195 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.164 0.836 27 H 0.125 0.875 28 H 0.110 0.890 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.714 -2.948 -4.124 5.120 hybrid contribution -0.108 -1.221 -0.760 1.443 sum 0.605 -4.170 -4.884 6.451 Atomic orbital electron populations 1.21704 0.95105 1.00911 1.02374 1.20273 0.95828 0.92635 1.01913 1.18464 0.98668 0.95937 0.91681 1.24290 1.16527 0.97968 1.00821 1.83612 1.73580 1.14725 1.01588 1.22259 1.02971 0.97190 0.95222 1.20051 1.15650 0.98054 0.89407 1.17471 0.91287 0.90548 0.92677 1.20462 1.13099 1.18752 1.01173 0.88964 1.27140 0.93090 0.91020 1.06388 1.70506 1.13627 1.23478 1.28995 0.83707 0.76922 0.78109 0.73029 1.19536 1.19424 1.19835 1.17396 1.09842 0.94135 0.78547 1.91376 1.92404 1.90585 1.38218 1.20129 1.01331 0.98404 0.90787 1.17192 1.15550 0.94399 0.92364 0.92953 0.92338 0.92816 0.91770 0.91349 0.83623 0.87490 0.89033 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 37.15 0.37 -1.64 15 2 C -0.07 -1.02 5.90 -27.88 -0.16 -1.18 15 3 C -0.04 -0.68 5.07 -105.69 -0.54 -1.22 15 4 C -0.26 -4.76 10.79 28.82 0.31 -4.45 15 5 S 0.00 0.05 23.29 -107.50 -2.50 -2.45 15 6 C -0.06 -1.41 6.46 -38.56 -0.25 -1.66 15 7 C -0.21 -4.96 9.81 -38.57 -0.38 -5.34 15 8 C 0.09 2.21 5.02 -106.84 -0.54 1.67 15 9 C -0.51 -12.83 8.70 -37.94 -0.33 -13.16 15 10 H 0.09 2.24 8.06 -52.49 -0.42 1.82 15 11 C 0.05 1.26 3.78 -17.34 -0.07 1.19 15 12 N -0.75 -19.07 12.67 55.54 0.70 -18.37 15 13 Si 1.06 20.89 30.06 -169.99 -5.11 15.79 15 14 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 15 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 16 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 17 C 0.02 0.52 6.71 -39.36 -0.26 0.26 15 18 F -0.15 -3.75 14.95 2.25 0.03 -3.71 15 19 C -0.09 -1.93 9.56 -39.17 -0.37 -2.31 15 20 C -0.19 -4.20 5.87 -106.83 -0.63 -4.83 15 21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.06 0.85 8.08 -51.92 -0.42 0.43 15 25 H 0.07 1.03 7.54 -51.93 -0.39 0.64 15 26 H 0.15 2.21 8.06 -52.48 -0.42 1.79 15 27 H 0.11 2.48 8.06 -52.49 -0.42 2.05 15 28 H 0.30 7.79 8.13 -40.82 -0.33 7.46 15 29 H 0.11 2.21 7.51 -52.49 -0.39 1.81 15 LS Contribution 269.71 15.07 4.06 4.06 Total: -1.00 -26.14 269.71 -8.53 -34.67 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -2.87 Total: 2.66 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: -2.85 Total: -32.65 kcal Atomic # 7 Polarization: -19.07 SS G_CDS: 0.70 Total: -18.37 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.03 Total: -3.71 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.11 Total: 15.79 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.50 Total: -2.45 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.14 -8.53 -34.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317161.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.845 kcal (2) G-P(sol) polarization free energy of solvation -26.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds