Wall clock time and date at job start Mon Mar 30 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50704 * 109.47298 * 2 1 4 4 C 1.32496 * 122.05674 * 265.02470 * 3 2 1 5 5 S 1.75477 * 110.84707 * 179.97438 * 4 3 2 6 6 C 1.76059 * 91.55214 * 0.02562 * 5 4 3 7 7 C 1.38833 * 130.42831 * 180.29269 * 6 5 4 8 8 C 1.40350 * 120.00529 * 180.19410 * 7 6 5 9 9 C 1.40956 * 120.21492 * 179.76735 * 8 7 6 10 10 H 1.08000 * 119.99679 * 323.56585 * 9 8 7 11 11 C 1.39883 * 120.00050 * 143.56029 * 9 8 7 12 12 N 1.30892 * 120.00196 * 321.05069 * 11 9 8 13 13 Si 1.86802 * 119.99811 * 141.04689 * 11 9 8 14 14 H 1.48504 * 109.47114 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 300.00098 * 13 11 9 16 16 H 1.48493 * 109.47045 * 60.00210 * 13 11 9 17 17 C 1.41479 * 119.56964 * 359.48848 * 8 7 6 18 18 F 1.35098 * 119.83380 * 180.22877 * 17 8 7 19 19 C 1.35412 * 120.32295 * 0.25431 * 17 8 7 20 20 C 1.40365 * 109.36401 * 359.97438 * 6 5 4 21 21 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47280 * 300.00180 * 1 2 3 23 23 H 1.09005 * 109.47142 * 60.00096 * 1 2 3 24 24 H 1.09008 * 109.47349 * 240.00363 * 2 1 3 25 25 H 1.08997 * 109.47394 * 119.99697 * 2 1 3 26 26 H 1.08004 * 124.57726 * 0.02562 * 4 3 2 27 27 H 1.07997 * 119.99782 * 359.95828 * 7 6 5 28 28 H 0.96999 * 120.00026 * 354.23290 * 12 11 9 29 29 H 1.08001 * 119.57360 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3586 2.0514 -1.1187 5 16 2.9038 3.6843 -0.7789 6 6 2.6639 3.4559 0.9502 7 6 2.8685 4.3284 2.0106 8 6 2.6056 3.9102 3.3243 9 6 2.8165 4.7908 4.4046 10 1 3.6486 5.4790 4.3857 11 6 1.9480 4.7733 5.5010 12 7 0.6625 4.6108 5.3151 13 14 2.6227 4.9817 7.2304 14 1 1.5058 4.9259 8.2075 15 1 3.5880 3.8909 7.5199 16 1 3.3107 6.2932 7.3386 17 6 2.1220 2.6011 3.5568 18 9 1.8628 2.1946 4.8188 19 6 1.9182 1.7536 2.5205 20 6 2.1834 2.1583 1.1860 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 2.2965 1.6190 -2.1065 27 1 3.2336 5.3276 1.8248 28 1 0.3019 4.5865 4.4150 29 1 1.5491 0.7568 2.7119 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396317161.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:40 Heat of formation + Delta-G solvation = -45.492925 kcal Electronic energy + Delta-G solvation = -15692.861294 eV Core-core repulsion = 13005.919373 eV Total energy + Delta-G solvation = -2686.941921 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.46053 -40.29121 -37.41972 -35.36611 -32.68585 -31.62278 -30.08300 -26.95451 -25.14245 -23.51900 -23.01422 -20.46608 -20.20792 -18.26330 -17.46642 -17.23524 -16.30465 -16.16067 -15.65108 -15.34066 -15.10385 -14.65394 -14.38224 -14.32143 -13.67027 -13.53934 -13.46481 -13.07413 -12.87088 -12.68683 -12.07175 -11.93239 -11.86100 -11.53120 -11.47424 -11.38185 -10.74732 -10.36617 -9.55352 -9.20516 -8.50693 -6.55565 -0.00175 0.49312 0.82750 1.29008 1.33449 1.47478 1.68859 1.77533 2.23793 2.48364 3.10339 3.67895 3.87608 4.09961 4.20272 4.39822 4.52443 4.59476 4.71194 4.78522 4.95622 5.01857 5.07905 5.14014 5.22700 5.37072 5.46369 5.53881 5.70495 5.80973 5.85466 5.99857 6.50648 6.61254 7.78610 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.007312 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.114699 B = 3828.213761 C = 4453.625820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.057 4.057 4 C -0.238 4.238 5 S 0.035 5.965 6 C -0.095 4.095 7 C -0.218 4.218 8 C 0.065 3.935 9 C -0.551 4.551 10 H 0.088 0.912 11 C 0.025 3.975 12 N -0.774 5.774 13 Si 1.103 2.897 14 H -0.268 1.268 15 H -0.267 1.267 16 H -0.249 1.249 17 C -0.006 4.006 18 F -0.156 7.156 19 C -0.085 4.085 20 C -0.184 4.184 21 H 0.079 0.921 22 H 0.033 0.967 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.188 0.812 27 H 0.105 0.895 28 H 0.280 0.720 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 -5.660 -6.806 8.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C -0.069 4.069 4 C -0.371 4.371 5 S 0.297 5.703 6 C -0.210 4.210 7 C -0.244 4.244 8 C 0.059 3.941 9 C -0.577 4.577 10 H 0.106 0.894 11 C -0.197 4.197 12 N -0.392 5.392 13 Si 0.919 3.081 14 H -0.192 1.192 15 H -0.191 1.191 16 H -0.173 1.173 17 C -0.026 4.026 18 F -0.135 7.135 19 C -0.106 4.106 20 C -0.190 4.190 21 H 0.098 0.902 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.205 0.795 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.946 -4.515 -6.208 7.734 hybrid contribution -0.148 -0.848 -0.513 1.002 sum 0.799 -5.363 -6.721 8.636 Atomic orbital electron populations 1.21693 0.94269 1.02449 1.01420 1.20360 0.96422 0.90162 1.03420 1.18769 0.99672 0.98013 0.90400 1.24903 1.13045 0.96727 1.02401 1.83551 1.72835 1.15794 0.98109 1.22638 1.03298 0.97613 0.97437 1.20152 1.16021 0.98447 0.89803 1.17739 0.91840 0.91102 0.93410 1.20542 1.14181 1.20293 1.02677 0.89372 1.28353 0.92551 0.89411 1.09431 1.70627 1.14390 1.26593 1.27597 0.83213 0.76584 0.79272 0.68985 1.19208 1.19144 1.17264 1.17657 1.11439 0.94668 0.78842 1.91333 1.92655 1.90620 1.38904 1.20390 1.00474 0.98984 0.90711 1.17697 1.13512 0.94498 0.93301 0.90240 0.94750 0.92308 0.88708 0.91461 0.79505 0.87658 0.90926 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.89 71.98 0.71 -2.72 15 2 C -0.06 -1.68 5.90 29.85 0.18 -1.51 15 3 C -0.06 -1.97 5.07 -20.45 -0.10 -2.08 15 4 C -0.24 -7.51 10.79 66.68 0.72 -6.79 15 5 S 0.03 1.25 23.29 -56.49 -1.32 -0.07 15 6 C -0.09 -4.30 6.46 22.93 0.15 -4.15 15 7 C -0.22 -10.88 9.81 22.93 0.22 -10.66 15 8 C 0.07 3.47 5.02 -21.30 -0.11 3.36 15 9 C -0.55 -29.16 8.70 23.33 0.20 -28.96 15 10 H 0.09 4.54 8.06 -2.91 -0.02 4.51 15 11 C 0.02 1.25 3.78 85.23 0.32 1.58 15 12 N -0.77 -41.26 12.67 21.82 0.28 -40.98 15 13 Si 1.10 42.90 30.06 68.60 2.06 44.97 15 14 H -0.27 -10.16 7.11 99.48 0.71 -9.46 15 15 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15 16 H -0.25 -8.62 7.11 99.48 0.71 -7.91 15 17 C -0.01 -0.30 6.71 22.42 0.15 -0.15 15 18 F -0.16 -8.24 14.95 44.97 0.67 -7.57 15 19 C -0.08 -3.84 9.56 22.54 0.22 -3.63 15 20 C -0.18 -7.92 5.87 -21.30 -0.12 -8.04 15 21 H 0.08 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.03 0.99 8.14 -2.38 -0.02 0.97 15 23 H 0.06 1.36 8.14 -2.38 -0.02 1.34 15 24 H 0.09 1.95 8.08 -2.38 -0.02 1.93 15 25 H 0.07 1.80 7.54 -2.39 -0.02 1.78 15 26 H 0.19 4.41 8.06 -2.91 -0.02 4.39 15 27 H 0.11 5.09 8.06 -2.91 -0.02 5.07 15 28 H 0.28 15.58 8.13 -92.71 -0.75 14.82 15 29 H 0.13 5.20 7.51 -2.91 -0.02 5.17 15 Total: -1.00 -58.12 269.71 5.41 -52.71 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 1.18 Total: 14.68 kcal Atomic # 6 Polarization: -66.27 SS G_CDS: 2.54 Total: -63.73 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.28 Total: -40.98 kcal Atomic # 9 Polarization: -8.24 SS G_CDS: 0.67 Total: -7.57 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.06 Total: 44.97 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -58.12 5.41 -52.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396317161.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.213 kcal (2) G-P(sol) polarization free energy of solvation -58.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds