Wall clock time and date at job start Mon Mar 30 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.47402 * 2 1 4 4 C 1.40475 * 119.99238 * 269.97728 * 3 2 1 5 5 C 1.45614 * 129.15967 * 0.02562 * 4 3 2 6 6 C 1.31654 * 114.90029 * 180.02562 * 5 4 3 7 7 S 1.75260 * 111.52989 * 359.97438 * 6 5 4 8 8 C 1.40195 * 119.08464 * 179.97438 * 4 3 2 9 9 C 1.40375 * 120.19901 * 0.02562 * 8 4 3 10 10 C 1.35929 * 120.80908 * 359.75467 * 9 8 4 11 11 F 1.35100 * 119.97975 * 180.23980 * 10 9 8 12 12 C 1.39893 * 119.99015 * 89.99401 * 3 2 1 13 13 C 1.41215 * 120.07688 * 359.97438 * 12 3 2 14 14 H 1.08004 * 119.99948 * 323.22356 * 13 12 3 15 15 C 1.39861 * 120.00366 * 143.22269 * 13 12 3 16 16 N 1.30910 * 119.99757 * 340.44518 * 15 13 12 17 17 Si 1.86796 * 120.00158 * 160.71933 * 15 13 12 18 18 H 1.48501 * 109.47193 * 179.72683 * 17 15 13 19 19 H 1.48500 * 109.47293 * 299.72629 * 17 15 13 20 20 H 1.48504 * 109.47188 * 59.72826 * 17 15 13 21 21 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47396 * 299.99926 * 1 2 3 23 23 H 1.09006 * 109.47200 * 59.99866 * 1 2 3 24 24 H 1.08997 * 109.47396 * 240.00074 * 2 1 3 25 25 H 1.09006 * 109.47200 * 120.00134 * 2 1 3 26 26 H 1.08003 * 122.55337 * 359.96996 * 5 4 3 27 27 H 1.07999 * 124.23859 * 179.97438 * 6 5 4 28 28 H 1.08003 * 119.59740 * 179.97438 * 9 8 4 29 29 H 0.96998 * 120.00047 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2669 2.0827 -1.2166 5 6 2.0942 1.5941 -2.5774 6 6 2.4014 2.4599 -3.5205 7 16 2.9407 3.9838 -2.8435 8 6 2.7337 3.4044 -1.1944 9 6 2.9622 4.0521 0.0298 10 6 2.7316 3.4149 1.2082 11 9 2.9527 4.0559 2.3768 12 6 2.2653 2.0801 1.2116 13 6 2.0298 1.4160 2.4354 14 1 1.1953 0.7368 2.5294 15 6 2.8771 1.6376 3.5258 16 7 4.0740 2.1322 3.3347 17 14 2.3038 1.2207 5.2541 18 1 3.3819 1.5407 6.2239 19 1 1.0931 2.0166 5.5795 20 1 1.9808 -0.2266 5.3328 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.7417 0.5970 -2.7966 27 1 2.3301 2.2565 -4.5787 28 1 3.3222 5.0703 0.0356 29 1 4.6616 2.2863 4.0909 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318402.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:00 Heat of formation + Delta-G solvation = -20.910406 kcal Electronic energy + Delta-G solvation = -15954.329277 eV Core-core repulsion = 13268.453334 eV Total energy + Delta-G solvation = -2685.875943 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.21931 -38.34616 -34.77134 -33.01322 -32.94552 -29.21977 -27.67820 -25.46830 -22.88341 -22.42393 -20.07384 -19.74728 -17.43494 -16.39901 -15.72002 -15.33220 -14.89861 -14.04150 -13.96882 -13.52219 -13.16089 -13.07520 -12.44610 -12.28887 -12.03508 -11.58304 -11.50251 -11.36979 -11.21866 -11.03999 -10.80896 -10.44515 -10.28589 -9.87815 -9.72798 -9.33803 -9.10553 -8.32896 -7.20284 -6.96222 -6.75989 -4.49842 1.74543 2.43871 2.44192 2.88884 3.02575 3.05763 3.09428 3.28803 3.89563 4.43315 5.18883 5.41820 5.70068 5.78769 5.93174 5.99880 6.14279 6.23802 6.41238 6.50921 6.53914 6.63698 6.76447 6.89764 6.95805 7.09107 7.19029 7.37275 7.45867 7.68955 8.00072 8.25629 8.62213 8.72278 10.10366 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.008512 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.734188 B = 3288.563812 C = 4051.995076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.051 4.051 5 C -0.108 4.108 6 C -0.209 4.209 7 S 0.010 5.990 8 C -0.196 4.196 9 C -0.121 4.121 10 C 0.089 3.911 11 F -0.136 7.136 12 C 0.094 3.906 13 C -0.461 4.461 14 H 0.089 0.911 15 C 0.079 3.921 16 N -0.778 5.778 17 Si 0.910 3.090 18 H -0.278 1.278 19 H -0.263 1.263 20 H -0.265 1.265 21 H 0.041 0.959 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.130 0.870 27 H 0.151 0.849 28 H 0.106 0.894 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 -1.211 -5.123 5.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.057 4.057 5 C -0.139 4.139 6 C -0.342 4.342 7 S 0.269 5.731 8 C -0.310 4.310 9 C -0.145 4.145 10 C 0.067 3.933 11 F -0.114 7.114 12 C 0.090 3.910 13 C -0.490 4.490 14 H 0.107 0.893 15 C -0.142 4.142 16 N -0.401 5.401 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.187 1.187 20 H -0.189 1.189 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.148 0.852 27 H 0.168 0.832 28 H 0.124 0.876 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.149 0.201 -5.640 6.039 hybrid contribution -0.416 -1.197 1.525 1.982 sum -2.565 -0.997 -4.116 4.951 Atomic orbital electron populations 1.21726 0.96675 0.99838 1.01634 1.20090 0.94432 0.93681 1.01210 1.19346 1.10452 0.95341 0.89653 1.18833 1.01818 0.92569 0.92448 1.20940 1.01812 0.99747 0.91422 1.24609 1.09677 0.97798 1.02097 1.83407 1.74524 1.16358 0.98793 1.21535 1.16589 0.98248 0.94674 1.19556 1.05630 0.99334 0.89960 1.17369 1.04811 0.91269 0.79830 1.91370 1.92312 1.81019 1.46741 1.17229 0.91042 0.89561 0.93197 1.19305 1.11573 1.24026 0.94056 0.89291 1.25838 0.93820 0.93102 1.01438 1.69781 1.05438 1.30525 1.34379 0.86322 0.79595 0.79810 0.80870 1.20315 1.18723 1.18936 0.93977 0.92536 0.93628 0.93401 0.90854 0.85181 0.83152 0.87554 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.87 37.15 0.37 -2.06 15 2 C -0.06 -1.11 5.31 -27.89 -0.15 -1.26 15 3 C -0.14 -3.30 5.25 -103.16 -0.54 -3.84 15 4 C -0.05 -1.12 5.97 -105.38 -0.63 -1.75 15 5 C -0.11 -1.98 9.80 -38.51 -0.38 -2.36 15 6 C -0.21 -3.52 11.00 28.86 0.32 -3.20 15 7 S 0.01 0.19 23.23 -107.50 -2.50 -2.31 15 8 C -0.20 -4.39 6.51 -38.04 -0.25 -4.64 15 9 C -0.12 -2.86 9.95 -39.61 -0.39 -3.26 15 10 C 0.09 2.29 6.61 -39.21 -0.26 2.03 15 11 F -0.14 -3.58 14.25 2.25 0.03 -3.55 15 12 C 0.09 2.39 5.38 -106.95 -0.58 1.82 15 13 C -0.46 -11.57 7.66 -37.84 -0.29 -11.86 15 14 H 0.09 2.11 6.85 -52.48 -0.36 1.75 15 15 C 0.08 1.94 4.50 -17.34 -0.08 1.86 15 16 N -0.78 -20.13 11.12 55.54 0.62 -19.52 15 17 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 15 18 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.06 1.02 7.66 -51.93 -0.40 0.63 15 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 15 24 H 0.05 0.85 7.26 -51.93 -0.38 0.47 15 25 H 0.07 1.50 6.93 -51.93 -0.36 1.14 15 26 H 0.13 2.07 7.53 -52.48 -0.40 1.67 15 27 H 0.15 2.00 8.06 -52.49 -0.42 1.58 15 28 H 0.11 2.30 8.06 -52.48 -0.42 1.88 15 29 H 0.29 6.82 8.30 -40.82 -0.34 6.48 15 LS Contribution 264.27 15.07 3.98 3.98 Total: -1.00 -26.77 264.27 -8.47 -35.24 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -2.71 Total: 1.18 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -2.86 Total: -28.51 kcal Atomic # 7 Polarization: -20.13 SS G_CDS: 0.62 Total: -19.52 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.03 Total: -3.55 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.50 Total: -2.31 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.77 -8.47 -35.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318402.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.327 kcal (2) G-P(sol) polarization free energy of solvation -26.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds