Wall clock time and date at job start Mon Mar 30 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47268 * 2 1 4 4 C 1.37632 * 119.92931 * 265.00540 * 3 2 1 5 5 C 1.38140 * 121.09086 * 179.97438 * 4 3 2 6 6 C 1.39616 * 121.45257 * 0.02562 * 5 4 3 7 7 S 1.76065 * 130.60119 * 180.29961 * 6 5 4 8 8 C 1.75499 * 91.53771 * 180.02562 * 7 6 5 9 9 C 1.32892 * 110.67066 * 359.68260 * 8 7 6 10 10 F 1.35099 * 122.12371 * 180.26405 * 9 8 7 11 11 C 1.39775 * 120.06045 * 359.97438 * 6 5 4 12 12 C 1.40340 * 119.93184 * 84.96523 * 3 2 1 13 13 C 1.40558 * 120.40543 * 0.03839 * 12 3 2 14 14 H 1.08005 * 119.99774 * 311.00417 * 13 12 3 15 15 C 1.39967 * 120.00449 * 131.00912 * 13 12 3 16 16 N 1.30853 * 119.99943 * 343.93559 * 15 13 12 17 17 Si 1.86797 * 120.00277 * 163.93654 * 15 13 12 18 18 H 1.48498 * 109.47203 * 89.99793 * 17 15 13 19 19 H 1.48505 * 109.47212 * 209.99995 * 17 15 13 20 20 H 1.48502 * 109.47021 * 329.99898 * 17 15 13 21 21 H 1.08997 * 109.47095 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46491 * 299.99915 * 1 2 3 23 23 H 1.08995 * 109.47520 * 59.99636 * 1 2 3 24 24 H 1.09004 * 109.46491 * 240.00084 * 2 1 3 25 25 H 1.08995 * 109.47520 * 120.00364 * 2 1 3 26 26 H 1.07997 * 119.45869 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.27211 * 180.02562 * 5 4 3 28 28 H 1.08001 * 124.66883 * 179.97438 * 8 7 6 29 29 H 0.96991 * 119.99968 * 185.09476 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3592 2.0336 -1.1883 5 6 2.8214 3.3351 -1.2162 6 6 2.9757 4.0787 -0.0447 7 16 3.5297 5.7321 0.1984 8 6 3.3275 5.5945 1.9363 9 6 2.8717 4.3893 2.2616 10 9 2.6275 4.0352 3.5422 11 6 2.6599 3.5098 1.1924 12 6 2.1652 2.1166 1.2115 13 6 1.8330 1.4962 2.4283 14 1 0.8898 0.9802 2.5315 15 6 2.7244 1.5473 3.5062 16 7 3.9732 1.8835 3.3071 17 14 2.1313 1.1353 5.2290 18 1 2.3030 -0.3186 5.4772 19 1 2.9236 1.9041 6.2223 20 1 0.6958 1.4932 5.3571 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8932 -0.5139 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 2.2526 1.4880 -2.1141 27 1 3.0688 3.7873 -2.1652 28 1 3.5394 6.3826 2.6437 29 1 4.6078 1.8476 4.0398 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318409.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:03 Heat of formation + Delta-G solvation = -14.022644 kcal Electronic energy + Delta-G solvation = -16200.705314 eV Core-core repulsion = 13515.128046 eV Total energy + Delta-G solvation = -2685.577267 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.66872 -38.16252 -34.69378 -33.65683 -31.94194 -29.42793 -27.71561 -25.33705 -23.09484 -22.08179 -20.70192 -18.73347 -17.84986 -16.21082 -15.69918 -15.11802 -14.71069 -14.46518 -14.26878 -13.65211 -13.08584 -12.81576 -12.51461 -12.44763 -11.82427 -11.67324 -11.39026 -11.30117 -11.11308 -10.96099 -10.70173 -10.36381 -10.24571 -9.90447 -9.66084 -9.39244 -9.09683 -7.96380 -7.35067 -6.92735 -6.52041 -4.55753 1.75739 2.52599 2.57452 2.90133 3.04851 3.07930 3.11230 3.41158 3.89521 4.49791 5.15706 5.61350 5.79615 5.80833 5.95015 6.07752 6.20869 6.26619 6.42840 6.54983 6.69764 6.74238 6.88077 7.00078 7.01274 7.08675 7.19889 7.56136 7.68011 7.77592 7.96672 8.22595 8.60745 8.69339 10.10110 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.013461 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.933932 B = 2079.594488 C = 3396.409598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C -0.192 4.192 4 C -0.047 4.047 5 C -0.213 4.213 6 C -0.070 4.070 7 S 0.037 5.963 8 C -0.335 4.335 9 C 0.192 3.808 10 F -0.125 7.125 11 C -0.175 4.175 12 C 0.189 3.811 13 C -0.467 4.467 14 H 0.092 0.908 15 C 0.093 3.907 16 N -0.780 5.780 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.259 1.259 21 H 0.040 0.960 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.154 0.846 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 0.523 -2.356 3.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 C -0.196 4.196 4 C -0.068 4.068 5 C -0.238 4.238 6 C -0.185 4.185 7 S 0.296 5.704 8 C -0.469 4.469 9 C 0.161 3.839 10 F -0.103 7.103 11 C -0.181 4.181 12 C 0.184 3.816 13 C -0.495 4.495 14 H 0.110 0.890 15 C -0.128 4.128 16 N -0.403 5.403 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.199 1.199 20 H -0.182 1.182 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.171 0.829 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.363 1.825 -3.014 3.778 hybrid contribution -0.419 -1.121 2.043 2.367 sum -1.782 0.704 -0.971 2.148 Atomic orbital electron populations 1.21745 0.96824 0.99820 1.01570 1.20088 0.94411 0.93755 1.01015 1.19665 1.11242 0.95885 0.92760 1.20367 0.96501 0.93466 0.96462 1.19554 1.14429 0.95647 0.94191 1.22069 1.03601 0.95704 0.97101 1.83319 1.74045 1.12337 1.00661 1.24316 1.21471 1.01985 0.99159 1.16136 0.97113 0.91604 0.79012 1.91379 1.91399 1.92185 1.35343 1.19085 1.13526 0.95708 0.89824 1.18097 0.84396 0.86693 0.92396 1.19360 1.04359 1.30761 0.94975 0.89005 1.25819 0.94337 0.91985 1.00642 1.69707 1.03004 1.32828 1.34776 0.86326 0.80519 0.78676 0.81343 1.19671 1.19892 1.18239 0.94047 0.92494 0.93722 0.93546 0.91091 0.88160 0.88382 0.82878 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.88 37.16 0.37 -2.04 15 2 C -0.06 -1.06 5.55 -27.88 -0.15 -1.22 15 3 C -0.19 -4.32 5.18 -104.05 -0.54 -4.86 15 4 C -0.05 -0.99 9.58 -39.84 -0.38 -1.37 15 5 C -0.21 -4.60 10.02 -39.10 -0.39 -4.99 15 6 C -0.07 -1.63 6.49 -38.49 -0.25 -1.88 15 7 S 0.04 0.75 23.29 -107.50 -2.50 -1.75 15 8 C -0.34 -7.33 11.11 28.89 0.32 -7.01 15 9 C 0.19 4.75 6.55 -40.74 -0.27 4.49 15 10 F -0.12 -3.15 13.16 2.25 0.03 -3.12 15 11 C -0.17 -4.45 5.53 -104.71 -0.58 -5.02 15 12 C 0.19 4.78 5.34 -104.30 -0.56 4.22 15 13 C -0.47 -11.66 7.21 -38.06 -0.27 -11.93 15 14 H 0.09 2.19 6.77 -52.48 -0.36 1.83 15 15 C 0.09 2.29 3.12 -17.32 -0.05 2.24 15 16 N -0.78 -20.13 11.28 55.55 0.63 -19.51 15 17 Si 0.91 18.98 29.26 -169.99 -4.97 14.00 15 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 21 H 0.04 0.60 8.14 -51.93 -0.42 0.17 15 22 H 0.06 1.03 7.07 -51.93 -0.37 0.67 15 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 15 24 H 0.05 0.80 8.04 -51.93 -0.42 0.38 15 25 H 0.07 1.45 7.30 -51.93 -0.38 1.07 15 26 H 0.10 1.78 8.05 -52.49 -0.42 1.36 15 27 H 0.10 1.87 8.06 -52.49 -0.42 1.44 15 28 H 0.15 2.93 8.06 -52.49 -0.42 2.51 15 29 H 0.29 6.85 8.30 -40.82 -0.34 6.51 15 LS Contribution 261.79 15.07 3.95 3.95 Total: -1.00 -26.55 261.79 -8.40 -34.95 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -2.77 Total: 0.86 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.76 Total: -29.38 kcal Atomic # 7 Polarization: -20.13 SS G_CDS: 0.63 Total: -19.51 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.03 Total: -3.12 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.97 Total: 14.00 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.50 Total: -1.75 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.55 -8.40 -34.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318409.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.928 kcal (2) G-P(sol) polarization free energy of solvation -26.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds