Wall clock time and date at job start Mon Mar 30 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47196 * 2 1 4 4 C 1.32551 * 124.58423 * 89.99821 * 3 2 1 5 5 C 1.40422 * 115.87758 * 180.02562 * 4 3 2 6 6 C 1.40325 * 112.36999 * 0.02562 * 5 4 3 7 7 C 1.38873 * 120.18119 * 180.02562 * 6 5 4 8 8 C 1.40424 * 120.01132 * 359.97438 * 7 6 5 9 9 C 1.40996 * 120.18726 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99820 * 154.40760 * 9 8 7 11 11 C 1.39858 * 119.99992 * 334.39930 * 9 8 7 12 12 N 1.30890 * 120.00334 * 343.15775 * 11 9 8 13 13 Si 1.86802 * 119.99884 * 163.15887 * 11 9 8 14 14 H 1.48501 * 109.46985 * 90.00044 * 13 11 9 15 15 H 1.48495 * 109.47444 * 209.99950 * 13 11 9 16 16 H 1.48493 * 109.47166 * 330.00410 * 13 11 9 17 17 C 1.41179 * 119.61964 * 0.02562 * 8 7 6 18 18 C 1.35434 * 120.36994 * 0.02622 * 17 8 7 19 19 F 1.35096 * 119.59386 * 180.02562 * 18 17 8 20 20 S 1.75475 * 124.58399 * 269.69899 * 3 2 1 21 21 H 1.09004 * 109.47018 * 59.99799 * 1 2 3 22 22 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47161 * 299.99982 * 1 2 3 24 24 H 1.08997 * 109.47360 * 239.99809 * 2 1 3 25 25 H 1.09004 * 109.47018 * 120.00201 * 2 1 3 26 26 H 1.07996 * 122.05503 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.99639 * 180.02562 * 7 6 5 28 28 H 0.96995 * 120.00307 * 179.97438 * 12 11 9 29 29 H 1.08000 * 119.81686 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2831 2.1301 1.0913 5 6 2.7453 3.4390 0.8787 6 6 2.8548 3.7518 -0.4848 7 6 3.2985 5.0071 -0.8797 8 6 3.6386 5.9678 0.0864 9 6 4.0900 7.2433 -0.3103 10 1 3.9612 8.0904 0.3473 11 6 4.7047 7.4116 -1.5552 12 7 5.1591 6.3712 -2.2067 13 14 4.8772 9.1211 -2.2882 14 1 6.1635 9.7199 -1.8502 15 1 4.8533 9.0290 -3.7701 16 1 3.7520 9.9733 -1.8270 17 6 3.5268 5.6488 1.4572 18 6 3.0951 4.4243 1.8423 19 9 2.9937 4.1360 3.1582 20 16 2.3715 2.3573 -1.4447 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 2.1407 1.7263 2.0827 27 1 3.3813 5.2449 -1.9299 28 1 5.5851 6.4879 -3.0703 29 1 3.7871 6.3854 2.2029 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318552.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:23 Heat of formation + Delta-G solvation = -33.089623 kcal Electronic energy + Delta-G solvation = -15287.935051 eV Core-core repulsion = 12601.530977 eV Total energy + Delta-G solvation = -2686.404073 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.94285 -38.14723 -35.73804 -33.80814 -31.94533 -29.09286 -28.50551 -25.52795 -23.12481 -22.29534 -20.78051 -19.21444 -17.99883 -16.41227 -15.50224 -15.28719 -15.00668 -14.65730 -14.37799 -13.79462 -13.69340 -13.15911 -12.83289 -12.38336 -12.09105 -11.97616 -11.57682 -11.34278 -11.22174 -11.04357 -10.89763 -10.65775 -10.28099 -10.13328 -9.90666 -9.66225 -9.16651 -8.41853 -7.45715 -7.08873 -6.70097 -4.62413 1.75956 2.54094 2.57453 2.83139 2.92858 2.97842 2.99374 3.37345 3.70456 4.30434 5.20866 5.24722 5.36855 5.47548 5.61600 5.79641 6.03256 6.07363 6.16436 6.22840 6.41885 6.53261 6.64149 6.81050 6.85126 7.07965 7.10733 7.38015 7.56613 7.73566 7.82505 8.22249 8.48326 8.53488 9.83335 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.006743 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.568420 B = 4151.440251 C = 4926.929175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.039 4.039 3 C -0.229 4.229 4 C -0.068 4.068 5 C -0.239 4.239 6 C -0.054 4.054 7 C -0.163 4.163 8 C 0.140 3.860 9 C -0.431 4.431 10 H 0.089 0.911 11 C 0.071 3.929 12 N -0.768 5.768 13 Si 0.917 3.083 14 H -0.266 1.266 15 H -0.272 1.272 16 H -0.257 1.257 17 C -0.232 4.232 18 C 0.153 3.847 19 F -0.161 7.161 20 S 0.015 5.985 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.128 0.872 28 H 0.289 0.711 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 -4.322 0.325 5.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.344 4.344 4 C -0.097 4.097 5 C -0.245 4.245 6 C -0.170 4.170 7 C -0.190 4.190 8 C 0.133 3.867 9 C -0.459 4.459 10 H 0.107 0.893 11 C -0.151 4.151 12 N -0.391 5.391 13 Si 0.740 3.260 14 H -0.191 1.191 15 H -0.197 1.197 16 H -0.180 1.180 17 C -0.253 4.253 18 C 0.132 3.868 19 F -0.139 7.139 20 S 0.276 5.724 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.136 0.864 27 H 0.145 0.855 28 H 0.100 0.900 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.601 -4.811 -1.335 6.156 hybrid contribution 0.344 0.963 1.366 1.706 sum -3.257 -3.848 0.032 5.042 Atomic orbital electron populations 1.21781 0.95414 1.00782 1.02322 1.19872 0.95344 0.90805 1.01860 1.23323 1.15201 1.00368 0.95468 1.19496 0.99386 0.92930 0.97893 1.17546 1.19138 0.95510 0.92307 1.22097 1.03080 0.97664 0.94118 1.20629 1.07001 0.91088 1.00285 1.17200 0.87536 0.92819 0.89126 1.19657 1.30783 0.94779 1.00687 0.89298 1.26067 0.93000 0.99597 0.96393 1.69839 1.24016 1.32143 1.13120 0.86152 0.80026 0.81236 0.78602 1.19085 1.19691 1.18048 1.20647 1.11715 0.95409 0.97498 1.17159 1.00490 0.93882 0.75311 1.91348 1.94192 1.94377 1.34027 1.83605 1.73237 1.06125 1.09455 0.92591 0.93010 0.92659 0.91762 0.91267 0.86382 0.85460 0.90013 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.89 37.16 0.37 -1.53 15 2 C -0.04 -0.58 6.39 -27.88 -0.18 -0.76 15 3 C -0.23 -4.37 5.68 -36.22 -0.21 -4.57 15 4 C -0.07 -1.41 9.88 -40.67 -0.40 -1.81 15 5 C -0.24 -5.66 5.89 -106.78 -0.63 -6.29 15 6 C -0.05 -1.32 6.46 -38.56 -0.25 -1.57 15 7 C -0.16 -4.15 8.71 -38.52 -0.34 -4.49 15 8 C 0.14 3.54 5.56 -106.91 -0.59 2.94 15 9 C -0.43 -10.46 9.03 -37.93 -0.34 -10.81 15 10 H 0.09 2.02 7.90 -52.48 -0.41 1.61 15 11 C 0.07 1.63 5.14 -17.35 -0.09 1.54 15 12 N -0.77 -18.45 10.96 55.54 0.61 -17.84 15 13 Si 0.92 17.01 29.59 -169.99 -5.03 11.98 15 14 H -0.27 -4.87 7.11 56.52 0.40 -4.47 15 15 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 16 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 17 C -0.23 -5.56 9.64 -39.47 -0.38 -5.94 15 18 C 0.15 3.61 7.30 -39.07 -0.29 3.33 15 19 F -0.16 -3.55 17.16 2.25 0.04 -3.51 15 20 S 0.01 0.31 23.26 -107.50 -2.50 -2.19 15 21 H 0.05 0.76 8.14 -51.93 -0.42 0.33 15 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.12 2.23 8.06 -52.49 -0.42 1.80 15 27 H 0.13 3.30 6.18 -52.49 -0.32 2.98 15 28 H 0.29 6.24 8.30 -40.82 -0.34 5.90 15 29 H 0.11 2.51 8.06 -52.49 -0.42 2.08 15 LS Contribution 271.07 15.07 4.08 4.08 Total: -1.00 -25.70 271.07 -8.95 -34.65 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -2.83 Total: 2.76 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -3.32 Total: -29.94 kcal Atomic # 7 Polarization: -18.45 SS G_CDS: 0.61 Total: -17.84 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.04 Total: -3.51 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.50 Total: -2.19 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -25.70 -8.95 -34.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318552.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.562 kcal (2) G-P(sol) polarization free energy of solvation -25.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds