Wall clock time and date at job start Mon Mar 30 2020 05:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47196 * 2 1 4 4 C 1.32551 * 124.58423 * 89.99821 * 3 2 1 5 5 C 1.40422 * 115.87758 * 180.02562 * 4 3 2 6 6 C 1.40325 * 112.36999 * 0.02562 * 5 4 3 7 7 C 1.38873 * 120.18119 * 180.02562 * 6 5 4 8 8 C 1.40424 * 120.01132 * 359.97438 * 7 6 5 9 9 C 1.40996 * 120.18726 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99820 * 154.40760 * 9 8 7 11 11 C 1.39858 * 119.99992 * 334.39930 * 9 8 7 12 12 N 1.30890 * 120.00334 * 343.15775 * 11 9 8 13 13 Si 1.86802 * 119.99884 * 163.15887 * 11 9 8 14 14 H 1.48501 * 109.46985 * 90.00044 * 13 11 9 15 15 H 1.48495 * 109.47444 * 209.99950 * 13 11 9 16 16 H 1.48493 * 109.47166 * 330.00410 * 13 11 9 17 17 C 1.41179 * 119.61964 * 0.02562 * 8 7 6 18 18 C 1.35434 * 120.36994 * 0.02622 * 17 8 7 19 19 F 1.35096 * 119.59386 * 180.02562 * 18 17 8 20 20 S 1.75475 * 124.58399 * 269.69899 * 3 2 1 21 21 H 1.09004 * 109.47018 * 59.99799 * 1 2 3 22 22 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47161 * 299.99982 * 1 2 3 24 24 H 1.08997 * 109.47360 * 239.99809 * 2 1 3 25 25 H 1.09004 * 109.47018 * 120.00201 * 2 1 3 26 26 H 1.07996 * 122.05503 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.99639 * 180.02562 * 7 6 5 28 28 H 0.96995 * 120.00307 * 179.97438 * 12 11 9 29 29 H 1.08000 * 119.81686 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2831 2.1301 1.0913 5 6 2.7453 3.4390 0.8787 6 6 2.8548 3.7518 -0.4848 7 6 3.2985 5.0071 -0.8797 8 6 3.6386 5.9678 0.0864 9 6 4.0900 7.2433 -0.3103 10 1 3.9612 8.0904 0.3473 11 6 4.7047 7.4116 -1.5552 12 7 5.1591 6.3712 -2.2067 13 14 4.8772 9.1211 -2.2882 14 1 6.1635 9.7199 -1.8502 15 1 4.8533 9.0290 -3.7701 16 1 3.7520 9.9733 -1.8270 17 6 3.5268 5.6488 1.4572 18 6 3.0951 4.4243 1.8423 19 9 2.9937 4.1360 3.1582 20 16 2.3715 2.3573 -1.4447 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 2.1407 1.7263 2.0827 27 1 3.3813 5.2449 -1.9299 28 1 5.5851 6.4879 -3.0703 29 1 3.7871 6.3854 2.2029 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318552.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:22 Heat of formation + Delta-G solvation = -43.855955 kcal Electronic energy + Delta-G solvation = -15288.401914 eV Core-core repulsion = 12601.530977 eV Total energy + Delta-G solvation = -2686.870937 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.74721 -39.91692 -37.36209 -35.42346 -33.47416 -30.92814 -30.16524 -27.16322 -24.60282 -24.02950 -22.49253 -20.82011 -19.78814 -18.12427 -17.24714 -16.98446 -16.70327 -16.46349 -16.03722 -15.27838 -15.11688 -14.63008 -14.32546 -14.08147 -13.72686 -13.60879 -13.03868 -12.85692 -12.84636 -12.49994 -12.39910 -12.01473 -11.98894 -11.62786 -11.58302 -11.38144 -10.89199 -10.20426 -9.22738 -8.81646 -8.46149 -6.46358 0.04446 0.65589 0.86608 1.29505 1.31429 1.40373 1.54897 1.70962 2.15241 2.54387 3.38724 3.60754 3.85225 4.22806 4.30524 4.46440 4.50917 4.67459 4.80649 4.87895 4.98564 5.04078 5.07374 5.22827 5.28207 5.32689 5.40006 5.63482 5.76510 5.89835 6.00077 6.38497 6.66528 6.70033 8.13974 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.006743 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.568420 B = 4151.440251 C = 4926.929175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.201 4.201 4 C -0.096 4.096 5 C -0.248 4.248 6 C -0.083 4.083 7 C -0.185 4.185 8 C 0.114 3.886 9 C -0.460 4.460 10 H 0.096 0.904 11 C 0.034 3.966 12 N -0.803 5.803 13 Si 0.991 3.009 14 H -0.258 1.258 15 H -0.266 1.266 16 H -0.254 1.254 17 C -0.243 4.243 18 C 0.142 3.858 19 F -0.153 7.153 20 S 0.033 5.967 21 H 0.047 0.953 22 H 0.082 0.918 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.139 0.861 27 H 0.113 0.887 28 H 0.297 0.703 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 -5.396 0.170 6.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.316 4.316 4 C -0.125 4.125 5 C -0.254 4.254 6 C -0.198 4.198 7 C -0.211 4.211 8 C 0.107 3.893 9 C -0.488 4.488 10 H 0.114 0.886 11 C -0.185 4.185 12 N -0.426 5.426 13 Si 0.811 3.189 14 H -0.183 1.183 15 H -0.190 1.190 16 H -0.177 1.177 17 C -0.263 4.263 18 C 0.121 3.879 19 F -0.131 7.131 20 S 0.294 5.706 21 H 0.066 0.934 22 H 0.101 0.899 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.157 0.843 27 H 0.131 0.869 28 H 0.108 0.892 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.213 -5.894 -1.478 7.394 hybrid contribution 0.479 1.092 1.424 1.857 sum -3.734 -4.802 -0.054 6.083 Atomic orbital electron populations 1.21758 0.93785 1.02706 1.01725 1.20110 0.96612 0.87800 1.03649 1.24001 1.11769 1.01864 0.93949 1.19656 1.01170 0.92118 0.99541 1.17944 1.18641 0.96790 0.92062 1.22428 1.03386 0.98531 0.95435 1.20563 1.08696 0.92220 0.99649 1.17514 0.88365 0.93615 0.89756 1.19959 1.31921 0.94779 1.02143 0.88606 1.26956 0.91880 1.03570 0.96089 1.69887 1.24576 1.34394 1.13747 0.85048 0.80136 0.75947 0.77803 1.18258 1.18979 1.17724 1.20812 1.12014 0.96041 0.97451 1.17253 1.00773 0.94018 0.75821 1.91353 1.94159 1.94310 1.33326 1.83503 1.72474 1.04711 1.09871 0.93406 0.89893 0.93106 0.90330 0.89100 0.84311 0.86914 0.89234 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.89 71.98 0.71 -2.46 15 2 C -0.04 -1.09 6.39 29.85 0.19 -0.90 15 3 C -0.20 -7.21 5.68 24.54 0.14 -7.07 15 4 C -0.10 -3.85 9.88 21.65 0.21 -3.63 15 5 C -0.25 -11.77 5.89 -21.26 -0.13 -11.89 15 6 C -0.08 -4.07 6.46 22.93 0.15 -3.92 15 7 C -0.18 -9.76 8.71 22.95 0.20 -9.56 15 8 C 0.11 5.97 5.56 -21.35 -0.12 5.85 15 9 C -0.46 -23.00 9.03 23.34 0.21 -22.79 15 10 H 0.10 4.46 7.90 -2.91 -0.02 4.44 15 11 C 0.03 1.56 5.14 85.23 0.44 2.00 15 12 N -0.80 -39.52 10.96 21.81 0.24 -39.28 15 13 Si 0.99 34.84 29.59 68.60 2.03 36.87 15 14 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 15 H -0.27 -8.95 7.11 99.48 0.71 -8.24 15 16 H -0.25 -8.71 7.11 99.48 0.71 -8.00 15 17 C -0.24 -11.95 9.64 22.34 0.22 -11.73 15 18 C 0.14 6.82 7.30 22.60 0.17 6.99 15 19 F -0.15 -6.70 17.16 44.97 0.77 -5.93 15 20 S 0.03 1.35 23.26 -56.49 -1.31 0.03 15 21 H 0.05 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 15 23 H 0.05 1.19 8.14 -2.38 -0.02 1.17 15 24 H 0.08 1.84 8.14 -2.39 -0.02 1.83 15 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 26 H 0.14 4.92 8.06 -2.91 -0.02 4.90 15 27 H 0.11 6.15 6.18 -2.91 -0.02 6.13 15 28 H 0.30 13.06 8.30 -92.71 -0.77 12.29 15 29 H 0.13 5.67 8.06 -2.91 -0.02 5.65 15 Total: -1.00 -56.06 271.07 5.28 -50.77 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.17 Total: 16.65 kcal Atomic # 6 Polarization: -61.50 SS G_CDS: 2.39 Total: -59.11 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.24 Total: -39.28 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.77 Total: -5.93 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.31 Total: 0.03 kcal Total: -56.06 5.28 -50.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318552.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.919 kcal (2) G-P(sol) polarization free energy of solvation -56.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds