Wall clock time and date at job start Mon Mar 30 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47282 * 2 1 4 4 C 1.32682 * 122.10057 * 266.55284 * 3 2 1 5 5 S 1.75505 * 110.66586 * 179.89480 * 4 3 2 6 6 C 1.76077 * 91.51039 * 0.30804 * 5 4 3 7 7 C 1.39741 * 130.56224 * 179.83234 * 6 5 4 8 8 C 1.37981 * 121.49908 * 180.02562 * 7 6 5 9 9 C 1.37950 * 121.05069 * 359.97438 * 8 7 6 10 10 F 1.35106 * 119.96579 * 180.02562 * 9 8 7 11 11 C 1.40569 * 120.06466 * 359.97438 * 9 8 7 12 12 C 1.40511 * 120.41330 * 180.02562 * 11 9 8 13 13 H 1.08008 * 119.99918 * 139.95156 * 12 11 9 14 14 C 1.39981 * 120.00165 * 319.95043 * 12 11 9 15 15 N 1.30859 * 120.00222 * 343.46087 * 14 12 11 16 16 Si 1.86801 * 120.00128 * 163.46152 * 14 12 11 17 17 H 1.48497 * 109.47278 * 59.99820 * 16 14 12 18 18 H 1.48498 * 109.47552 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47309 * 300.00237 * 16 14 12 20 20 C 1.39631 * 109.31833 * 359.82635 * 6 5 4 21 21 H 1.08994 * 109.47475 * 59.99777 * 1 2 3 22 22 H 1.09009 * 109.47192 * 300.00066 * 1 2 3 23 23 H 1.09004 * 109.47477 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46943 * 120.00276 * 2 1 3 25 25 H 1.08998 * 109.46745 * 240.00013 * 2 1 3 26 26 H 1.08007 * 124.66187 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.25195 * 359.97438 * 7 6 5 28 28 H 1.08006 * 119.47314 * 179.97438 * 8 7 6 29 29 H 0.97004 * 120.00343 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3311 2.0630 -1.1219 5 16 2.8820 3.6928 -0.7748 6 6 2.6903 3.4387 0.9570 7 6 2.9307 4.2968 2.0334 8 6 2.7133 3.8975 3.3361 9 6 2.2483 2.6310 3.6240 10 9 2.0426 2.2632 4.9077 11 6 1.9871 1.7232 2.5830 12 6 1.5127 0.4317 2.8678 13 1 0.7516 -0.0138 2.2442 14 6 2.0265 -0.2777 3.9597 15 7 3.1493 0.1000 4.5157 16 14 1.1095 -1.7638 4.6232 17 1 0.9881 -2.7881 3.5549 18 1 1.8564 -2.3335 5.7733 19 1 -0.2454 -1.3508 5.0692 20 6 2.2187 2.1443 1.1845 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.2450 1.6415 -2.1126 27 1 3.2956 5.2949 1.8413 28 1 2.9105 4.5874 4.1433 29 1 3.5052 -0.3913 5.2725 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396318801.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:55 Heat of formation + Delta-G solvation = -16.809539 kcal Electronic energy + Delta-G solvation = -16111.047363 eV Core-core repulsion = 13425.349247 eV Total energy + Delta-G solvation = -2685.698116 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.00209 -38.33467 -34.92517 -33.99339 -31.16122 -29.78260 -27.83551 -25.27638 -23.57299 -21.72592 -21.03935 -18.38911 -18.05614 -16.21251 -15.58822 -15.15266 -14.84396 -14.35596 -13.84281 -13.51205 -13.22944 -12.88752 -12.63335 -12.17225 -11.90984 -11.60588 -11.47656 -11.34311 -11.27947 -11.06300 -10.66470 -10.34321 -10.28800 -9.81900 -9.67431 -9.52728 -9.23843 -8.02406 -7.30853 -7.05952 -6.66442 -4.55621 1.76490 2.53950 2.59246 2.97222 2.98089 2.99274 3.04616 3.40312 3.78568 4.39481 5.13033 5.62582 5.70187 5.81925 5.92041 6.06583 6.12671 6.18471 6.39190 6.49189 6.65652 6.72403 6.81418 6.85831 6.96882 7.16497 7.21563 7.47906 7.59158 7.65545 7.84962 8.20190 8.47025 8.63390 9.94850 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.010645 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.236901 B = 2629.679888 C = 3619.485889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.021 4.021 4 C -0.269 4.269 5 S 0.000 6.000 6 C -0.084 4.084 7 C -0.200 4.200 8 C -0.092 4.092 9 C 0.010 3.990 10 F -0.144 7.144 11 C 0.131 3.869 12 C -0.445 4.445 13 H 0.104 0.896 14 C 0.074 3.926 15 N -0.761 5.761 16 Si 0.912 3.088 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.151 4.151 21 H 0.045 0.955 22 H 0.064 0.936 23 H 0.049 0.951 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.146 0.854 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 -0.347 -3.983 4.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.032 4.032 4 C -0.402 4.402 5 S 0.262 5.738 6 C -0.199 4.199 7 C -0.225 4.225 8 C -0.114 4.114 9 C -0.013 4.013 10 F -0.123 7.123 11 C 0.125 3.875 12 C -0.472 4.472 13 H 0.122 0.878 14 C -0.149 4.149 15 N -0.382 5.382 16 Si 0.735 3.265 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.158 4.158 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.164 0.836 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.545 0.743 -4.739 5.040 hybrid contribution -0.586 -1.712 1.388 2.281 sum -2.131 -0.969 -3.351 4.088 Atomic orbital electron populations 1.21727 0.95556 1.00754 1.01918 1.20567 0.95541 0.92654 1.03062 1.18445 0.97357 0.96317 0.91111 1.24362 1.17324 0.97632 1.00877 1.83429 1.73863 1.15329 1.01137 1.22232 1.04842 0.97789 0.95011 1.19304 1.14342 0.98771 0.90105 1.20389 0.99929 0.95146 0.95962 1.17348 1.12152 0.92952 0.78867 1.91325 1.93203 1.92261 1.35465 1.18260 0.89266 0.92465 0.87501 1.19672 1.18831 0.98999 1.09723 0.87829 1.25963 0.94217 0.99693 0.95023 1.69748 1.14722 1.36487 1.17277 0.86271 0.80735 0.80336 0.79143 1.18583 1.20039 1.18426 1.18832 1.10375 0.93335 0.93268 0.93553 0.91682 0.93201 0.88201 0.92836 0.83623 0.88083 0.87442 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.16 37.16 0.34 -2.04 15 2 C -0.08 -1.47 5.39 -27.89 -0.15 -1.62 15 3 C -0.02 -0.44 5.07 -105.84 -0.54 -0.98 15 4 C -0.27 -5.24 10.82 28.84 0.31 -4.92 15 5 S 0.00 0.00 23.30 -107.50 -2.50 -2.51 15 6 C -0.08 -1.93 6.49 -38.50 -0.25 -2.18 15 7 C -0.20 -4.45 10.01 -39.11 -0.39 -4.84 15 8 C -0.09 -2.13 9.93 -39.78 -0.40 -2.52 15 9 C 0.01 0.25 6.64 -38.81 -0.26 -0.01 15 10 F -0.14 -3.76 14.45 2.25 0.03 -3.73 15 11 C 0.13 3.35 5.54 -104.22 -0.58 2.77 15 12 C -0.45 -10.88 6.76 -38.07 -0.26 -11.13 15 13 H 0.10 2.34 4.11 -52.48 -0.22 2.13 15 14 C 0.07 1.76 4.59 -17.31 -0.08 1.68 15 15 N -0.76 -19.17 11.19 55.55 0.62 -18.55 15 16 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 15 17 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 18 H -0.28 -5.30 7.11 56.52 0.40 -4.89 15 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 20 C -0.15 -3.64 6.02 -104.76 -0.63 -4.27 15 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 22 H 0.06 1.19 6.78 -51.92 -0.35 0.84 15 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.10 2.06 5.57 -51.93 -0.29 1.77 15 25 H 0.05 0.88 8.09 -51.93 -0.42 0.46 15 26 H 0.15 2.42 8.06 -52.48 -0.42 2.00 15 27 H 0.10 1.98 8.06 -52.49 -0.42 1.56 15 28 H 0.11 2.17 8.06 -52.48 -0.42 1.75 15 29 H 0.29 6.67 8.30 -40.82 -0.34 6.33 15 LS Contribution 259.56 15.07 3.91 3.91 Total: -1.00 -26.44 259.56 -8.37 -34.81 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -2.53 Total: 3.35 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -2.87 Total: -30.07 kcal Atomic # 7 Polarization: -19.17 SS G_CDS: 0.62 Total: -18.55 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.03 Total: -3.73 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.50 Total: -2.51 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.44 -8.37 -34.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318801.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.997 kcal (2) G-P(sol) polarization free energy of solvation -26.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds