Wall clock time and date at job start Mon Mar 30 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47279 * 2 1 4 4 C 1.37903 * 120.06419 * 264.99991 * 3 2 1 5 5 C 1.37780 * 120.75361 * 179.72209 * 4 3 2 6 6 C 1.41375 * 120.90399 * 0.02580 * 5 4 3 7 7 C 1.45468 * 129.14206 * 179.97438 * 6 5 4 8 8 C 1.32157 * 114.82679 * 180.02562 * 7 6 5 9 9 F 1.35099 * 124.35012 * 179.97438 * 8 7 6 10 10 S 1.75296 * 111.30458 * 0.02562 * 8 7 6 11 11 C 1.39401 * 118.99467 * 359.97438 * 6 5 4 12 12 C 1.40412 * 120.05731 * 84.72352 * 3 2 1 13 13 C 1.40944 * 120.10865 * 0.27773 * 12 3 2 14 14 H 1.08006 * 120.00067 * 39.11134 * 13 12 3 15 15 C 1.39917 * 120.00178 * 219.10673 * 13 12 3 16 16 N 1.30879 * 119.99692 * 20.61922 * 15 13 12 17 17 Si 1.86795 * 120.00404 * 200.62250 * 15 13 12 18 18 H 1.48505 * 109.46867 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47242 * 119.99800 * 17 15 13 20 20 H 1.48499 * 109.47423 * 240.00208 * 17 15 13 21 21 H 1.09003 * 109.46811 * 59.99636 * 1 2 3 22 22 H 1.08992 * 109.47275 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46841 * 299.99530 * 1 2 3 24 24 H 1.09000 * 109.46841 * 240.00470 * 2 1 3 25 25 H 1.08994 * 109.47018 * 120.00444 * 2 1 3 26 26 H 1.08003 * 119.62294 * 359.75297 * 4 3 2 27 27 H 1.07993 * 119.54547 * 180.02562 * 5 4 3 28 28 H 1.08001 * 122.58682 * 359.97438 * 7 6 5 29 29 H 0.96998 * 119.99794 * 181.95177 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3608 2.0374 -1.1890 5 6 2.8160 3.3377 -1.2060 6 6 2.9588 4.0728 -0.0068 7 6 3.4183 5.4399 0.1830 8 6 3.4419 5.8479 1.4398 9 9 3.8349 7.0787 1.8345 10 16 2.8991 4.5864 2.5292 11 6 2.6307 3.4627 1.2029 12 6 2.1615 2.1210 1.2102 13 6 1.8273 1.4955 2.4282 14 1 2.0772 0.4570 2.5883 15 6 1.1718 2.2198 3.4299 16 7 0.5162 3.3110 3.1259 17 14 1.2326 1.6296 5.2011 18 1 2.0329 0.3811 5.2796 19 1 1.8609 2.6738 6.0496 20 1 -0.1471 1.3648 5.6823 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.2595 1.4950 -2.1174 27 1 3.0672 3.8017 -2.1482 28 1 3.7178 6.0724 -0.6396 29 1 0.0856 3.8285 3.8242 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396318903.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:21 Heat of formation + Delta-G solvation = -35.219560 kcal Electronic energy + Delta-G solvation = -15805.936876 eV Core-core repulsion = 13119.440442 eV Total energy + Delta-G solvation = -2686.496434 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.94494 -39.99022 -36.72810 -35.34519 -33.12220 -31.56863 -28.83564 -27.24166 -24.69853 -23.48763 -22.41841 -20.96954 -19.68109 -18.18144 -17.38990 -16.78573 -16.66125 -16.61431 -15.80881 -15.44638 -14.86279 -14.47519 -14.05266 -13.97293 -13.83871 -13.45667 -13.15339 -12.91760 -12.68544 -12.52355 -12.24817 -11.89319 -11.58667 -11.52811 -11.25070 -11.11958 -10.67313 -10.08274 -8.92594 -8.80200 -8.10748 -6.36716 0.01349 0.54474 0.89716 1.32123 1.39059 1.49498 1.52936 1.61776 2.20444 2.72929 3.38509 3.45911 4.28087 4.37064 4.41951 4.59198 4.69213 4.76578 4.85163 5.01001 5.02284 5.13839 5.21643 5.33508 5.45415 5.59773 5.64623 5.74169 5.90056 6.08240 6.31767 6.52734 6.85321 6.93050 8.30395 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.012940 C = 0.007785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.191686 B = 2163.268958 C = 3595.778562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.052 4.052 3 C -0.178 4.178 4 C -0.086 4.086 5 C -0.189 4.189 6 C -0.072 4.072 7 C -0.158 4.158 8 C -0.041 4.041 9 F -0.117 7.117 10 S 0.109 5.891 11 C -0.189 4.189 12 C 0.126 3.874 13 C -0.489 4.489 14 H 0.085 0.915 15 C 0.041 3.959 16 N -0.803 5.803 17 Si 0.946 3.054 18 H -0.255 1.255 19 H -0.268 1.268 20 H -0.267 1.267 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.031 0.969 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.134 0.866 27 H 0.128 0.872 28 H 0.163 0.837 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -1.408 -2.882 3.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.183 4.183 4 C -0.105 4.105 5 C -0.210 4.210 6 C -0.078 4.078 7 C -0.192 4.192 8 C -0.174 4.174 9 F -0.097 7.097 10 S 0.372 5.628 11 C -0.305 4.305 12 C 0.121 3.879 13 C -0.519 4.519 14 H 0.103 0.897 15 C -0.175 4.175 16 N -0.430 5.430 17 Si 0.768 3.232 18 H -0.178 1.178 19 H -0.193 1.193 20 H -0.192 1.192 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.051 0.949 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.151 0.849 27 H 0.146 0.854 28 H 0.181 0.819 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.428 -1.176 -1.175 2.192 hybrid contribution 0.080 0.605 -0.434 0.749 sum 1.508 -0.571 -1.609 2.277 Atomic orbital electron populations 1.21560 0.95608 1.00938 1.00693 1.20128 0.95608 0.91944 1.01238 1.20148 1.07885 0.98407 0.91839 1.20709 0.98086 0.94373 0.97378 1.20603 1.10034 0.95339 0.95036 1.18926 1.02305 0.92262 0.94349 1.21229 1.05460 0.96465 0.96041 1.22226 1.10217 0.86334 0.98671 1.91408 1.89031 1.38098 1.91115 1.84120 1.66589 1.03298 1.08781 1.22734 1.13106 1.00676 0.93999 1.17063 0.88831 0.88190 0.93858 1.19479 1.34707 0.99103 0.98606 0.89670 1.26381 0.92899 0.94375 1.03823 1.69854 1.21988 1.14251 1.36858 0.85645 0.79238 0.79988 0.78363 1.17819 1.19264 1.19173 0.93463 0.91510 0.94940 0.90801 0.92620 0.84864 0.85433 0.81929 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.90 71.98 0.71 -3.83 15 2 C -0.05 -1.89 5.58 29.85 0.17 -1.72 15 3 C -0.18 -7.74 5.19 -19.42 -0.10 -7.84 15 4 C -0.09 -3.38 9.61 22.08 0.21 -3.16 15 5 C -0.19 -7.60 10.10 22.93 0.23 -7.37 15 6 C -0.07 -3.25 6.03 -20.36 -0.12 -3.37 15 7 C -0.16 -6.48 10.41 23.13 0.24 -6.24 15 8 C -0.04 -1.75 8.20 66.82 0.55 -1.20 15 9 F -0.12 -4.65 17.32 44.97 0.78 -3.87 15 10 S 0.11 5.12 19.88 -56.49 -1.12 4.00 15 11 C -0.19 -9.39 5.73 23.52 0.13 -9.26 15 12 C 0.13 6.29 5.37 -21.12 -0.11 6.18 15 13 C -0.49 -24.30 7.86 23.34 0.18 -24.11 15 14 H 0.09 4.11 6.76 -2.91 -0.02 4.09 15 15 C 0.04 1.98 4.27 85.24 0.36 2.35 15 16 N -0.80 -40.41 10.69 21.82 0.23 -40.18 15 17 Si 0.95 37.39 29.61 68.60 2.03 39.42 15 18 H -0.25 -9.81 7.11 99.48 0.71 -9.10 15 19 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 21 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.03 1.32 7.92 -2.39 -0.02 1.30 15 24 H 0.07 2.24 8.05 -2.39 -0.02 2.22 15 25 H 0.06 2.10 6.63 -2.39 -0.02 2.09 15 26 H 0.13 4.21 8.06 -2.91 -0.02 4.18 15 27 H 0.13 4.26 8.06 -2.91 -0.02 4.24 15 28 H 0.16 5.48 8.06 -2.91 -0.02 5.45 15 29 H 0.29 13.52 8.30 -92.71 -0.77 12.75 15 Total: -1.00 -54.35 265.18 5.55 -48.81 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.17 Total: 11.41 kcal Atomic # 6 Polarization: -62.04 SS G_CDS: 2.46 Total: -59.59 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.23 Total: -40.18 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.78 Total: -3.87 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 16 Polarization: 5.12 SS G_CDS: -1.12 Total: 4.00 kcal Total: -54.35 5.55 -48.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396318903.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.587 kcal (2) G-P(sol) polarization free energy of solvation -54.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds