Wall clock time and date at job start Mon Mar 30 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.46916 * 2 1 4 4 C 1.32495 * 124.57448 * 89.99888 * 3 2 1 5 5 C 1.40474 * 115.88148 * 180.02562 * 4 3 2 6 6 C 1.41953 * 128.60901 * 180.02562 * 5 4 3 7 7 C 1.35418 * 120.84911 * 179.97438 * 6 5 4 8 8 F 1.35109 * 119.83260 * 179.97438 * 7 6 5 9 9 C 1.41473 * 120.33229 * 0.02664 * 7 6 5 10 10 C 1.40948 * 120.22193 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99706 * 24.81856 * 10 9 7 12 12 C 1.39888 * 120.00112 * 204.82912 * 10 9 7 13 13 N 1.30896 * 119.99670 * 17.87837 * 12 10 9 14 14 Si 1.86796 * 120.00048 * 197.87630 * 12 10 9 15 15 H 1.48496 * 109.47044 * 94.68594 * 14 12 10 16 16 H 1.48494 * 109.47157 * 214.68700 * 14 12 10 17 17 H 1.48504 * 109.46951 * 334.68896 * 14 12 10 18 18 C 1.40355 * 119.56289 * 359.97136 * 9 7 6 19 19 C 1.38833 * 120.00775 * 0.02562 * 18 9 7 20 20 S 1.75479 * 124.57477 * 269.69961 * 3 2 1 21 21 H 1.09005 * 109.46862 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47178 * 299.99846 * 1 2 3 23 23 H 1.08999 * 109.47338 * 60.00059 * 1 2 3 24 24 H 1.08999 * 109.47338 * 119.99941 * 2 1 3 25 25 H 1.09001 * 109.47178 * 240.00154 * 2 1 3 26 26 H 1.07995 * 122.05829 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.57602 * 359.97438 * 6 5 4 28 28 H 0.97001 * 119.99652 * 180.02562 * 13 12 10 29 29 H 1.08003 * 119.99605 * 179.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2829 2.1298 1.0909 5 6 2.7452 3.4392 0.8786 6 6 3.0932 4.4227 1.8413 7 6 3.5260 5.6472 1.4577 8 9 3.8513 6.5680 2.3914 9 6 3.6381 5.9675 0.0843 10 6 4.0893 7.2425 -0.3123 11 1 4.7127 7.8249 0.3501 12 6 3.7295 7.7538 -1.5637 13 7 2.7183 7.2378 -2.2153 14 14 4.6920 9.1728 -2.3047 15 1 5.7404 8.6398 -3.2113 16 1 3.7709 10.0478 -3.0736 17 1 5.3301 9.9590 -1.2183 18 6 3.2982 5.0068 -0.8808 19 6 2.8548 3.7520 -0.4853 20 16 2.3714 2.3572 -1.4449 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.1397 1.7261 2.0823 27 1 3.0119 4.1914 2.8931 28 1 2.4690 7.5921 -3.0832 29 1 3.3807 5.2440 -1.9312 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396319173.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:24 Heat of formation + Delta-G solvation = -43.407563 kcal Electronic energy + Delta-G solvation = -15292.800914 eV Core-core repulsion = 12605.949421 eV Total energy + Delta-G solvation = -2686.851493 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.42598 -39.96183 -37.22518 -35.49725 -33.23829 -31.29754 -30.13295 -27.07159 -24.65150 -23.80305 -22.59937 -20.76492 -19.59077 -18.25567 -17.35252 -17.10966 -16.71915 -16.18544 -15.68431 -15.16229 -14.83335 -14.61777 -14.48765 -14.03202 -13.86546 -13.54212 -13.18090 -13.04510 -12.86048 -12.51699 -12.34984 -11.99438 -11.74319 -11.64689 -11.49071 -11.33327 -10.89619 -10.31454 -9.16567 -8.82816 -8.47213 -6.46093 0.07356 0.63313 0.89704 1.28903 1.34976 1.36072 1.50583 1.72922 2.13263 2.55950 3.33404 3.70067 4.02470 4.13117 4.30932 4.52814 4.56087 4.67629 4.84183 4.91279 5.00979 5.02013 5.09747 5.25249 5.25473 5.36690 5.43130 5.64544 5.78008 5.90276 5.95850 6.34748 6.60028 6.67482 8.11524 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030568 B = 0.006740 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.759878 B = 4153.019915 C = 4897.058121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C -0.196 4.196 4 C -0.097 4.097 5 C -0.187 4.187 6 C -0.090 4.090 7 C -0.015 4.015 8 F -0.160 7.160 9 C 0.069 3.931 10 C -0.469 4.469 11 H 0.084 0.916 12 C 0.035 3.965 13 N -0.803 5.803 14 Si 0.991 3.009 15 H -0.257 1.257 16 H -0.262 1.262 17 H -0.257 1.257 18 C -0.165 4.165 19 C -0.109 4.109 20 S 0.022 5.978 21 H 0.081 0.919 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.153 0.847 27 H 0.139 0.861 28 H 0.297 0.703 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -8.453 0.906 8.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.311 4.311 4 C -0.126 4.126 5 C -0.194 4.194 6 C -0.111 4.111 7 C -0.036 4.036 8 F -0.139 7.139 9 C 0.063 3.937 10 C -0.497 4.497 11 H 0.102 0.898 12 C -0.183 4.183 13 N -0.427 5.427 14 Si 0.810 3.190 15 H -0.182 1.182 16 H -0.186 1.186 17 H -0.180 1.180 18 C -0.191 4.191 19 C -0.223 4.223 20 S 0.284 5.716 21 H 0.100 0.900 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.114 0.886 25 H 0.095 0.905 26 H 0.170 0.830 27 H 0.156 0.844 28 H 0.108 0.892 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.939 -8.781 -0.768 9.025 hybrid contribution 0.469 1.482 1.231 1.983 sum -1.471 -7.299 0.463 7.460 Atomic orbital electron populations 1.21769 0.94026 1.02642 1.01692 1.20118 0.96381 0.87852 1.03802 1.24077 1.11215 1.01825 0.93952 1.19773 1.01077 0.91855 0.99865 1.17877 1.13770 0.96335 0.91374 1.20391 1.00053 0.91147 0.99465 1.17554 1.11166 0.88611 0.86224 1.91298 1.91552 1.66539 1.64531 1.17778 0.92029 0.94399 0.89498 1.19801 1.27299 1.00622 1.01996 0.89782 1.26892 0.94229 1.01132 0.96033 1.69876 1.20387 1.38840 1.13587 0.85050 0.78649 0.76543 0.78764 1.18181 1.18568 1.18016 1.20269 1.09603 0.90255 0.99018 1.22661 1.04700 0.98295 0.96693 1.83575 1.72384 1.05183 1.10498 0.89976 0.92869 0.93792 0.88582 0.90529 0.82961 0.84357 0.89189 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.89 71.98 0.71 -2.34 15 2 C -0.04 -1.00 6.39 29.85 0.19 -0.81 15 3 C -0.20 -6.56 5.68 24.55 0.14 -6.42 15 4 C -0.10 -3.50 9.97 21.68 0.22 -3.28 15 5 C -0.19 -8.36 5.89 -21.30 -0.13 -8.49 15 6 C -0.09 -4.05 9.95 22.54 0.22 -3.83 15 7 C -0.02 -0.78 7.21 22.42 0.16 -0.61 15 8 F -0.16 -7.95 16.68 44.97 0.75 -7.19 15 9 C 0.07 3.79 5.57 -21.30 -0.12 3.67 15 10 C -0.47 -25.16 8.75 23.33 0.20 -24.96 15 11 H 0.08 4.42 7.73 -2.91 -0.02 4.40 15 12 C 0.04 1.73 5.13 85.23 0.44 2.16 15 13 N -0.80 -40.85 10.97 21.82 0.24 -40.61 15 14 Si 0.99 36.86 29.60 68.60 2.03 38.89 15 15 H -0.26 -9.22 7.11 99.48 0.71 -8.52 15 16 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 17 H -0.26 -9.39 7.11 99.48 0.71 -8.68 15 18 C -0.17 -8.85 8.72 22.93 0.20 -8.65 15 19 C -0.11 -5.25 6.46 22.93 0.15 -5.10 15 20 S 0.02 0.88 23.26 -56.49 -1.31 -0.43 15 21 H 0.08 1.29 8.14 -2.38 -0.02 1.27 15 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 15 23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 15 24 H 0.10 1.87 8.14 -2.39 -0.02 1.85 15 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 15 26 H 0.15 4.46 8.06 -2.91 -0.02 4.44 15 27 H 0.14 5.24 8.06 -2.91 -0.02 5.22 15 28 H 0.30 13.44 8.30 -92.71 -0.77 12.67 15 29 H 0.11 6.29 6.16 -2.91 -0.02 6.28 15 Total: -1.00 -58.93 270.45 5.26 -53.67 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.17 Total: 14.32 kcal Atomic # 6 Polarization: -61.03 SS G_CDS: 2.39 Total: -58.64 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.24 Total: -40.61 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.75 Total: -7.19 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -1.31 Total: -0.43 kcal Total: -58.93 5.26 -53.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319173.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.258 kcal (2) G-P(sol) polarization free energy of solvation -58.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds