Wall clock time and date at job start Mon Mar 30 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47252 * 2 1 4 4 C 1.32992 * 122.09418 * 90.02453 * 3 2 1 5 5 F 1.35100 * 124.60355 * 0.04141 * 4 3 2 6 6 S 1.75468 * 110.79304 * 180.02562 * 4 3 2 7 7 C 1.76042 * 91.57013 * 0.02562 * 6 4 3 8 8 C 1.38758 * 130.41576 * 180.02562 * 7 6 4 9 9 C 1.40424 * 119.99044 * 179.21752 * 8 7 6 10 10 C 1.40963 * 120.19958 * 180.22293 * 9 8 7 11 11 H 1.07992 * 119.99814 * 205.13329 * 10 9 8 12 12 C 1.39829 * 119.99678 * 25.13738 * 10 9 8 13 13 N 1.30919 * 120.00431 * 17.81575 * 12 10 9 14 14 Si 1.86802 * 119.99737 * 197.81192 * 12 10 9 15 15 H 1.48503 * 109.47144 * 90.00303 * 14 12 10 16 16 H 1.48498 * 109.47355 * 209.99684 * 14 12 10 17 17 H 1.48499 * 109.47317 * 330.00399 * 14 12 10 18 18 C 1.41263 * 119.59864 * 0.71426 * 9 8 7 19 19 C 1.35196 * 120.38024 * 359.53366 * 18 9 8 20 20 C 1.40329 * 122.09828 * 269.74388 * 3 2 1 21 21 H 1.08999 * 109.47463 * 59.99790 * 1 2 3 22 22 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46994 * 299.99758 * 1 2 3 24 24 H 1.09000 * 109.46994 * 240.00242 * 2 1 3 25 25 H 1.09002 * 109.47245 * 120.00694 * 2 1 3 26 26 H 1.07995 * 119.99904 * 359.97438 * 8 7 6 27 27 H 0.96999 * 120.00414 * 180.02562 * 13 12 10 28 28 H 1.07999 * 119.81055 * 179.50924 * 18 9 8 29 29 H 1.07994 * 119.56959 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2683 2.0868 1.1267 5 9 2.0914 1.5825 2.3675 6 16 2.8411 3.7093 0.7828 7 6 2.7402 3.4294 -0.9523 8 6 3.0357 4.2681 -2.0175 9 6 2.8887 3.8069 -3.3357 10 6 3.1922 4.6536 -4.4211 11 1 2.7244 4.4901 -5.3806 12 6 4.0988 5.7051 -4.2553 13 7 4.9196 5.7071 -3.2353 14 14 4.1392 7.1069 -5.4893 15 1 3.2029 8.1750 -5.0559 16 1 5.5160 7.6576 -5.5681 17 1 3.7305 6.6025 -6.8249 18 6 2.4250 2.4928 -3.5675 19 6 2.1325 1.6779 -2.5292 20 6 2.2859 2.1220 -1.1888 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.3903 5.2712 -1.8327 27 1 5.5483 6.4368 -3.1201 28 1 2.3032 2.1373 -4.5800 29 1 1.7785 0.6758 -2.7215 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396319245.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:57 Heat of formation + Delta-G solvation = -38.268381 kcal Electronic energy + Delta-G solvation = -15419.790669 eV Core-core repulsion = 12733.162028 eV Total energy + Delta-G solvation = -2686.628641 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.77014 -40.24877 -37.34230 -35.15708 -32.94451 -31.23780 -30.20942 -26.95195 -25.24903 -23.25444 -22.77690 -20.55761 -19.53601 -18.90457 -17.39499 -17.04570 -16.72051 -16.37734 -15.75529 -14.98912 -14.93986 -14.85021 -14.32282 -14.23655 -13.80770 -13.37315 -13.26068 -12.94977 -12.75853 -12.69978 -12.33795 -11.89134 -11.69500 -11.57729 -11.53232 -11.26814 -10.91950 -10.22083 -9.17324 -8.78058 -8.52784 -6.40058 -0.03327 0.47575 0.90016 1.11073 1.27351 1.40471 1.54050 1.68339 2.15707 2.62832 3.54825 3.55362 4.03837 4.15491 4.33860 4.48529 4.69068 4.70205 4.78799 4.97409 4.98864 5.03688 5.16321 5.23919 5.31757 5.39101 5.43597 5.81314 5.84256 5.99194 6.10227 6.46880 6.73601 6.82130 8.16032 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.006550 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.028013 B = 4273.663013 C = 4912.255546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.056 4.056 4 C -0.089 4.089 5 F -0.117 7.117 6 S 0.020 5.980 7 C -0.087 4.087 8 C -0.186 4.186 9 C 0.101 3.899 10 C -0.461 4.461 11 H 0.097 0.903 12 C 0.033 3.967 13 N -0.806 5.806 14 Si 0.988 3.012 15 H -0.264 1.264 16 H -0.269 1.269 17 H -0.249 1.249 18 C -0.204 4.204 19 C -0.041 4.041 20 C -0.209 4.209 21 H 0.052 0.948 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.294 0.706 28 H 0.125 0.875 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 -4.805 0.907 6.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 C -0.070 4.070 4 C -0.221 4.221 5 F -0.096 7.096 6 S 0.279 5.721 7 C -0.202 4.202 8 C -0.213 4.213 9 C 0.095 3.905 10 C -0.489 4.489 11 H 0.115 0.885 12 C -0.186 4.186 13 N -0.429 5.429 14 Si 0.808 3.192 15 H -0.188 1.188 16 H -0.194 1.194 17 H -0.172 1.172 18 C -0.223 4.223 19 C -0.061 4.061 20 C -0.214 4.214 21 H 0.071 0.929 22 H 0.104 0.896 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.143 0.857 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.564 -3.561 2.070 5.446 hybrid contribution 0.030 -0.228 -0.659 0.697 sum -3.534 -3.788 1.411 5.370 Atomic orbital electron populations 1.21656 0.93276 1.02891 1.01592 1.20358 0.97257 0.89424 1.03535 1.19054 0.99213 0.98592 0.90102 1.20897 1.20995 0.98018 0.82206 1.91355 1.94481 1.85954 1.37808 1.83763 1.74495 1.12462 1.01340 1.22376 1.04565 0.98517 0.94769 1.20452 1.11102 0.98891 0.90823 1.17872 0.88538 0.91854 0.92273 1.20027 1.20681 1.10040 0.98132 0.88481 1.26945 0.92639 1.00866 0.98101 1.69919 1.13575 1.30936 1.28514 0.85098 0.78649 0.76826 0.78672 1.18841 1.19382 1.17215 1.20981 1.08486 0.94074 0.98763 1.20538 0.96789 0.99171 0.89594 1.17501 1.16036 0.93937 0.93946 0.92872 0.89622 0.93730 0.89339 0.90680 0.87842 0.89516 0.85683 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.89 71.98 0.71 -2.77 15 2 C -0.07 -1.96 5.88 29.85 0.18 -1.78 15 3 C -0.06 -2.19 5.08 -20.52 -0.10 -2.30 15 4 C -0.09 -3.65 8.13 66.65 0.54 -3.11 15 5 F -0.12 -4.45 16.96 44.97 0.76 -3.69 15 6 S 0.02 0.86 23.29 -56.49 -1.32 -0.46 15 7 C -0.09 -4.23 6.46 22.92 0.15 -4.09 15 8 C -0.19 -9.69 8.72 22.93 0.20 -9.49 15 9 C 0.10 5.06 5.56 -21.34 -0.12 4.94 15 10 C -0.46 -22.39 9.02 23.32 0.21 -22.18 15 11 H 0.10 4.36 7.90 -2.91 -0.02 4.34 15 12 C 0.03 1.51 5.13 85.21 0.44 1.95 15 13 N -0.81 -39.90 10.98 21.81 0.24 -39.66 15 14 Si 0.99 34.79 29.59 68.60 2.03 36.82 15 15 H -0.26 -9.19 7.11 99.48 0.71 -8.49 15 16 H -0.27 -9.15 7.11 99.48 0.71 -8.44 15 17 H -0.25 -8.30 7.11 99.48 0.71 -7.59 15 18 C -0.20 -8.92 9.68 22.31 0.22 -8.71 15 19 C -0.04 -1.65 9.58 22.51 0.22 -1.44 15 20 C -0.21 -9.17 5.87 -21.30 -0.12 -9.30 15 21 H 0.05 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.08 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.04 1.20 8.14 -2.39 -0.02 1.18 15 24 H 0.09 2.36 7.29 -2.39 -0.02 2.34 15 25 H 0.07 2.08 7.92 -2.39 -0.02 2.06 15 26 H 0.10 5.69 6.16 -2.91 -0.02 5.67 15 27 H 0.29 13.15 8.30 -92.71 -0.77 12.38 15 28 H 0.13 4.82 8.06 -2.91 -0.02 4.79 15 29 H 0.14 4.38 7.37 -2.91 -0.02 4.36 15 Total: -1.00 -55.03 268.57 5.40 -49.63 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 1.17 Total: 15.63 kcal Atomic # 6 Polarization: -60.78 SS G_CDS: 2.51 Total: -58.27 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.24 Total: -39.66 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.76 Total: -3.69 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -1.32 Total: -0.46 kcal Total: -55.03 5.40 -49.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319245.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.361 kcal (2) G-P(sol) polarization free energy of solvation -55.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds