Wall clock time and date at job start Mon Mar 30 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47128 * 2 1 4 4 C 1.32691 * 124.67669 * 89.72359 * 3 2 1 5 5 C 1.40019 * 115.80797 * 179.79295 * 4 3 2 6 6 C 1.39617 * 112.70120 * 0.48447 * 5 4 3 7 7 S 1.75512 * 124.67044 * 270.02544 * 3 2 1 8 8 C 1.39907 * 120.06198 * 179.74960 * 6 5 4 9 9 F 1.35095 * 119.30610 * 179.97438 * 8 6 5 10 10 C 1.38444 * 121.38040 * 359.97438 * 8 6 5 11 11 C 1.37537 * 121.04672 * 0.02562 * 10 8 6 12 12 C 1.40377 * 120.16401 * 359.97438 * 11 10 8 13 13 C 1.40535 * 120.37013 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00324 * 204.86793 * 13 12 11 15 15 C 1.39953 * 120.00418 * 24.86453 * 13 12 11 16 16 N 1.30882 * 119.99730 * 17.82937 * 15 13 12 17 17 Si 1.86796 * 120.00651 * 197.83078 * 15 13 12 18 18 H 1.48508 * 109.46775 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47393 * 119.99813 * 17 15 13 20 20 H 1.48497 * 109.47137 * 240.00389 * 17 15 13 21 21 H 1.09001 * 109.47307 * 59.99853 * 1 2 3 22 22 H 1.08991 * 109.47234 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46827 * 300.00136 * 1 2 3 24 24 H 1.09001 * 109.47287 * 119.99590 * 2 1 3 25 25 H 1.09000 * 109.46827 * 239.99864 * 2 1 3 26 26 H 1.08003 * 122.09569 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.47355 * 179.97438 * 10 8 6 28 28 H 1.08002 * 119.92032 * 179.97438 * 11 10 8 29 29 H 0.97000 * 120.00160 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2790 2.1344 1.0912 5 6 2.7455 3.4368 0.8754 6 6 2.8562 3.7518 -0.4803 7 16 2.3646 2.3624 -1.4435 8 6 3.3039 5.0183 -0.8713 9 9 3.4057 5.3065 -2.1872 10 6 3.6446 5.9823 0.0621 11 6 3.5549 5.7271 1.4106 12 6 3.1122 4.4743 1.8634 13 6 3.0194 4.2086 3.2403 14 1 3.0771 3.1916 3.5992 15 6 2.8523 5.2619 4.1466 16 7 2.4374 6.4291 3.7241 17 14 3.2213 5.0020 5.9592 18 1 3.6713 3.6037 6.1772 19 1 4.2914 5.9391 6.3859 20 1 1.9940 5.2563 6.7556 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 2.1322 1.7345 2.0837 27 1 3.9870 6.9499 -0.2741 28 1 3.8259 6.4924 2.1229 29 1 2.3212 7.1590 4.3522 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396319253.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:33 Heat of formation + Delta-G solvation = -30.536601 kcal Electronic energy + Delta-G solvation = -15401.694806 eV Core-core repulsion = 12715.401440 eV Total energy + Delta-G solvation = -2686.293366 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.48544 -38.03223 -35.34991 -33.88178 -31.99282 -29.67986 -27.73269 -25.23722 -23.54070 -22.07178 -20.49134 -19.26599 -17.84459 -16.63538 -15.60154 -14.97699 -14.89677 -14.44308 -14.33813 -13.65189 -13.59014 -12.98286 -12.81735 -12.27119 -12.03026 -12.01027 -11.56098 -11.38600 -11.12437 -10.97379 -10.88843 -10.77326 -10.20669 -10.00265 -9.82928 -9.64783 -9.37398 -8.23843 -7.39878 -7.16830 -6.80767 -4.57349 1.76356 2.45496 2.52252 2.87769 2.92267 2.94121 2.97931 3.45561 3.64356 4.21543 5.25236 5.31529 5.43072 5.67642 5.69915 5.91451 6.03868 6.09428 6.21408 6.34201 6.44937 6.51341 6.67508 6.81604 6.85327 7.07989 7.17427 7.53985 7.63016 7.72335 7.82661 8.21983 8.42053 8.56006 9.72424 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.008617 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.040554 B = 3248.454526 C = 4495.459806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C -0.235 4.235 4 C -0.059 4.059 5 C -0.171 4.171 6 C -0.100 4.100 7 S 0.023 5.977 8 C -0.039 4.039 9 F -0.170 7.170 10 C -0.085 4.085 11 C -0.176 4.176 12 C 0.145 3.855 13 C -0.419 4.419 14 H 0.089 0.911 15 C 0.071 3.929 16 N -0.762 5.762 17 Si 0.918 3.082 18 H -0.255 1.255 19 H -0.267 1.267 20 H -0.270 1.270 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.130 0.870 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 -5.187 -0.076 5.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C -0.350 4.350 4 C -0.089 4.089 5 C -0.177 4.177 6 C -0.216 4.216 7 S 0.285 5.715 8 C -0.066 4.066 9 F -0.149 7.149 10 C -0.107 4.107 11 C -0.197 4.197 12 C 0.140 3.860 13 C -0.446 4.446 14 H 0.107 0.893 15 C -0.152 4.152 16 N -0.384 5.384 17 Si 0.741 3.259 18 H -0.179 1.179 19 H -0.192 1.192 20 H -0.195 1.195 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.144 0.856 27 H 0.125 0.875 28 H 0.148 0.852 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.973 -5.318 -1.554 5.625 hybrid contribution 0.179 0.507 1.991 2.062 sum -0.793 -4.811 0.436 4.896 Atomic orbital electron populations 1.21791 0.95447 1.00741 1.02398 1.19853 0.95319 0.90719 1.01807 1.23440 1.15989 1.00386 0.95192 1.19552 0.98453 0.92832 0.98031 1.18904 1.11695 0.96125 0.90966 1.22220 1.06379 0.96138 0.96824 1.83522 1.72152 1.06055 1.09778 1.16313 1.19517 0.93897 0.76861 1.91285 1.95711 1.94123 1.33822 1.20472 1.00181 0.96566 0.93459 1.20887 1.06904 0.98843 0.93105 1.18485 0.86475 0.89532 0.91514 1.19683 1.38958 0.95102 0.90861 0.89264 1.26147 0.91978 0.94270 1.02774 1.69846 1.27418 1.02786 1.38381 0.86076 0.79288 0.80442 0.80101 1.17876 1.19169 1.19476 0.92730 0.93051 0.92454 0.91097 0.91934 0.85618 0.87467 0.85190 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.89 37.16 0.37 -1.63 15 2 C -0.04 -0.57 6.39 -27.88 -0.18 -0.75 15 3 C -0.24 -4.58 5.69 -36.19 -0.21 -4.79 15 4 C -0.06 -1.28 9.60 -40.80 -0.39 -1.67 15 5 C -0.17 -4.17 6.02 -104.77 -0.63 -4.80 15 6 C -0.10 -2.43 6.46 -38.44 -0.25 -2.68 15 7 S 0.02 0.48 23.27 -107.50 -2.50 -2.02 15 8 C -0.04 -0.97 7.31 -38.88 -0.28 -1.25 15 9 F -0.17 -4.04 17.24 2.25 0.04 -4.00 15 10 C -0.09 -2.02 9.92 -39.76 -0.39 -2.41 15 11 C -0.18 -4.32 8.66 -39.03 -0.34 -4.66 15 12 C 0.15 3.66 5.76 -104.28 -0.60 3.06 15 13 C -0.42 -10.04 8.82 -38.07 -0.34 -10.37 15 14 H 0.09 2.03 7.52 -52.48 -0.39 1.64 15 15 C 0.07 1.58 5.13 -17.31 -0.09 1.49 15 16 N -0.76 -17.65 10.97 55.55 0.61 -17.04 15 17 Si 0.92 16.55 29.60 -169.99 -5.03 11.52 15 18 H -0.26 -4.57 7.11 56.52 0.40 -4.17 15 19 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 20 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 26 H 0.13 2.51 7.72 -52.48 -0.41 2.10 15 27 H 0.11 2.24 8.06 -52.49 -0.42 1.82 15 28 H 0.13 3.17 6.16 -52.49 -0.32 2.85 15 29 H 0.29 5.97 8.30 -40.82 -0.34 5.63 15 LS Contribution 270.52 15.07 4.08 4.08 Total: -1.00 -25.97 270.52 -8.93 -34.90 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -2.79 Total: 3.02 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -3.33 Total: -30.46 kcal Atomic # 7 Polarization: -17.65 SS G_CDS: 0.61 Total: -17.04 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.04 Total: -4.00 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.52 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -2.50 Total: -2.02 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -25.97 -8.93 -34.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319253.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.367 kcal (2) G-P(sol) polarization free energy of solvation -25.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds