Wall clock time and date at job start Mon Mar 30 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47428 * 2 1 4 4 C 1.31874 * 122.56046 * 265.02484 * 3 2 1 5 5 S 1.75310 * 111.32374 * 179.97438 * 4 3 2 6 6 C 1.75898 * 92.16944 * 359.97438 * 5 4 3 7 7 C 1.39345 * 109.77934 * 0.02562 * 6 5 4 8 8 C 1.41448 * 119.04070 * 179.97438 * 7 6 5 9 9 C 1.37635 * 120.96351 * 359.97438 * 8 7 6 10 10 C 1.38210 * 120.72481 * 359.75648 * 9 8 7 11 11 F 1.35103 * 120.09500 * 180.25813 * 10 9 8 12 12 C 1.40669 * 119.80732 * 0.52223 * 10 9 8 13 13 C 1.40854 * 120.13210 * 179.73871 * 12 10 9 14 14 H 1.08001 * 120.00124 * 145.72595 * 13 12 10 15 15 C 1.39889 * 119.99851 * 325.73123 * 13 12 10 16 16 N 1.30919 * 119.99738 * 332.14346 * 15 13 12 17 17 Si 1.86794 * 120.00483 * 152.14222 * 15 13 12 18 18 H 1.48503 * 109.47397 * 180.02562 * 17 15 13 19 19 H 1.48506 * 109.47284 * 300.00064 * 17 15 13 20 20 H 1.48497 * 109.47338 * 59.99896 * 17 15 13 21 21 H 1.09001 * 109.47048 * 300.00274 * 1 2 3 22 22 H 1.09009 * 109.47141 * 59.99630 * 1 2 3 23 23 H 1.08994 * 109.47201 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47274 * 240.00477 * 2 1 3 25 25 H 1.09000 * 109.47340 * 120.00443 * 2 1 3 26 26 H 1.07997 * 124.33986 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.52068 * 179.97438 * 8 7 6 28 28 H 1.07999 * 119.63457 * 180.02562 * 9 8 7 29 29 H 0.96993 * 119.99977 * 356.57489 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3598 2.0578 -1.1073 5 16 2.9045 3.6890 -0.7670 6 6 2.6690 3.4782 0.9633 7 6 2.1921 2.1946 1.2214 8 6 1.9339 1.8141 2.5591 9 6 2.1475 2.6907 3.5985 10 6 2.6254 3.9655 3.3602 11 9 2.8354 4.8138 4.3905 12 6 2.8872 4.3790 2.0414 13 6 3.3691 5.6785 1.7903 14 1 4.0616 5.8503 0.9795 15 6 2.9509 6.7464 2.5912 16 7 1.7798 6.7073 3.1751 17 14 4.0633 8.2283 2.8276 18 1 3.3936 9.2137 3.7140 19 1 5.3412 7.7942 3.4472 20 1 4.3399 8.8549 1.5100 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.3002 1.6294 -2.0969 27 1 1.5638 0.8213 2.7680 28 1 1.9436 2.3775 4.6117 29 1 1.1817 5.9611 3.0129 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396319920.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:43 Heat of formation + Delta-G solvation = -44.476383 kcal Electronic energy + Delta-G solvation = -15760.501199 eV Core-core repulsion = 13073.603359 eV Total energy + Delta-G solvation = -2686.897840 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.23142 -40.03558 -37.18451 -35.46460 -32.75282 -31.62054 -29.43758 -27.11994 -25.02695 -23.34603 -23.13558 -20.79023 -19.49026 -18.45266 -17.47656 -16.96439 -16.24773 -16.06619 -15.73695 -15.27242 -15.01497 -14.59623 -14.36864 -14.02671 -13.79243 -13.61754 -13.17832 -12.87642 -12.77116 -12.59210 -12.20219 -12.00392 -11.74010 -11.59323 -11.49724 -11.20402 -10.85553 -10.14732 -9.39852 -9.13153 -8.58076 -6.57814 0.03384 0.57894 0.90441 1.35708 1.40598 1.44752 1.64195 1.73778 2.25937 2.58999 3.15778 3.79976 3.93246 4.08387 4.26082 4.38205 4.45776 4.56622 4.74058 4.79714 4.97837 5.04693 5.13235 5.26770 5.36468 5.40924 5.46517 5.55336 5.63650 5.77514 5.85419 6.12180 6.53063 6.68902 7.90824 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030591 B = 0.008156 C = 0.006828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.084705 B = 3432.368330 C = 4099.620551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.094 4.094 4 C -0.200 4.200 5 S 0.044 5.956 6 C -0.219 4.219 7 C -0.055 4.055 8 C -0.182 4.182 9 C -0.105 4.105 10 C -0.064 4.064 11 F -0.160 7.160 12 C 0.074 3.926 13 C -0.544 4.544 14 H 0.078 0.922 15 C 0.008 3.992 16 N -0.790 5.790 17 Si 1.112 2.888 18 H -0.268 1.268 19 H -0.266 1.266 20 H -0.252 1.252 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.194 0.806 27 H 0.141 0.859 28 H 0.132 0.868 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 -8.946 -5.859 10.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 C -0.107 4.107 4 C -0.333 4.333 5 S 0.308 5.692 6 C -0.334 4.334 7 C -0.063 4.063 8 C -0.203 4.203 9 C -0.125 4.125 10 C -0.088 4.088 11 F -0.139 7.139 12 C 0.068 3.932 13 C -0.571 4.571 14 H 0.096 0.904 15 C -0.211 4.211 16 N -0.410 5.410 17 Si 0.928 3.072 18 H -0.192 1.192 19 H -0.191 1.191 20 H -0.176 1.176 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.099 0.901 24 H 0.111 0.889 25 H 0.094 0.906 26 H 0.211 0.789 27 H 0.159 0.841 28 H 0.150 0.850 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.156 -6.270 -6.023 8.695 hybrid contribution -0.641 -2.107 0.583 2.278 sum -0.485 -8.377 -5.440 10.000 Atomic orbital electron populations 1.21709 0.94224 1.02529 1.01485 1.20307 0.96373 0.89281 1.03765 1.19999 1.02152 0.98554 0.89991 1.25182 1.07972 0.97123 1.03021 1.83588 1.71836 1.14331 0.99425 1.22739 1.14547 0.99398 0.96765 1.19404 1.00097 0.91969 0.94807 1.20353 1.10444 1.00239 0.89282 1.20702 0.99725 0.91875 1.00235 1.17821 1.17467 0.89882 0.83637 1.91307 1.93827 1.71296 1.57476 1.17238 0.92908 0.93799 0.89242 1.20489 1.26381 0.93362 1.16881 0.90404 1.28366 0.97219 1.05426 0.90059 1.70581 1.06129 1.30878 1.33443 0.83084 0.74022 0.71272 0.78823 1.19229 1.19094 1.17611 0.94166 0.92860 0.90074 0.88853 0.90620 0.78929 0.84102 0.85019 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.89 71.98 0.71 -2.42 15 2 C -0.06 -1.39 6.05 29.85 0.18 -1.20 15 3 C -0.09 -3.18 5.23 -18.82 -0.10 -3.28 15 4 C -0.20 -6.47 10.75 67.00 0.72 -5.75 15 5 S 0.04 1.79 22.95 -56.49 -1.30 0.50 15 6 C -0.22 -10.76 6.36 23.51 0.15 -10.61 15 7 C -0.05 -2.33 6.01 -20.36 -0.12 -2.46 15 8 C -0.18 -7.43 9.80 22.92 0.22 -7.21 15 9 C -0.11 -4.76 9.95 22.12 0.22 -4.54 15 10 C -0.06 -3.45 6.19 22.86 0.14 -3.31 15 11 F -0.16 -9.01 14.29 44.97 0.64 -8.37 15 12 C 0.07 4.08 5.09 -21.07 -0.11 3.98 15 13 C -0.54 -30.18 8.61 23.31 0.20 -29.98 15 14 H 0.08 4.24 7.98 -2.91 -0.02 4.22 15 15 C 0.01 0.42 4.21 85.23 0.36 0.78 15 16 N -0.79 -44.72 12.04 21.82 0.26 -44.46 15 17 Si 1.11 45.51 30.01 68.60 2.06 47.56 15 18 H -0.27 -10.69 7.11 99.48 0.71 -9.99 15 19 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 20 H -0.25 -9.29 7.11 99.48 0.71 -8.58 15 21 H 0.04 1.03 8.14 -2.39 -0.02 1.01 15 22 H 0.05 1.17 8.14 -2.38 -0.02 1.15 15 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 15 24 H 0.09 1.76 8.09 -2.39 -0.02 1.74 15 25 H 0.08 1.76 7.81 -2.39 -0.02 1.74 15 26 H 0.19 4.56 8.06 -2.91 -0.02 4.54 15 27 H 0.14 4.64 7.77 -2.91 -0.02 4.62 15 28 H 0.13 5.17 8.06 -2.91 -0.02 5.14 15 29 H 0.28 16.38 7.12 -92.71 -0.66 15.72 15 Total: -1.00 -63.45 268.07 5.52 -57.93 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.27 Total: 12.83 kcal Atomic # 6 Polarization: -68.58 SS G_CDS: 2.58 Total: -65.99 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.26 Total: -44.46 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 0.64 Total: -8.37 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.06 Total: 47.56 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.30 Total: 0.50 kcal Total: -63.45 5.52 -57.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396319920.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.449 kcal (2) G-P(sol) polarization free energy of solvation -63.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds