Wall clock time and date at job start Mon Mar 30 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.46914 * 2 1 4 4 C 1.32685 * 124.66330 * 89.99347 * 3 2 1 5 5 C 1.40044 * 115.80014 * 179.97438 * 4 3 2 6 6 C 1.39674 * 112.70452 * 0.02562 * 5 4 3 7 7 C 1.39694 * 120.11767 * 180.02562 * 6 5 4 8 8 C 1.38019 * 121.50143 * 0.02562 * 7 6 5 9 9 C 1.37904 * 121.05591 * 359.97438 * 8 7 6 10 10 F 1.35102 * 119.97281 * 179.97438 * 9 8 7 11 11 C 1.40606 * 120.06032 * 0.02562 * 9 8 7 12 12 C 1.40518 * 120.41311 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99722 * 145.71196 * 12 11 9 14 14 C 1.39979 * 119.99938 * 325.71102 * 12 11 9 15 15 N 1.30862 * 120.00488 * 336.65646 * 14 12 11 16 16 Si 1.86806 * 119.99800 * 156.65436 * 14 12 11 17 17 H 1.48504 * 109.47031 * 95.00105 * 16 14 12 18 18 H 1.48507 * 109.47037 * 214.99631 * 16 14 12 19 19 H 1.48499 * 109.47019 * 334.99973 * 16 14 12 20 20 S 1.75509 * 124.66816 * 269.70132 * 3 2 1 21 21 H 1.08997 * 109.47453 * 299.99683 * 1 2 3 22 22 H 1.09003 * 109.47123 * 60.00437 * 1 2 3 23 23 H 1.09004 * 109.46663 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47623 * 119.99558 * 2 1 3 25 25 H 1.09000 * 109.47947 * 240.00332 * 2 1 3 26 26 H 1.07997 * 122.09797 * 359.94973 * 4 3 2 27 27 H 1.08003 * 119.24777 * 179.97438 * 7 6 5 28 28 H 1.07996 * 119.46799 * 180.02562 * 8 7 6 29 29 H 0.96998 * 120.00287 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2837 2.1324 1.0913 5 6 2.7454 3.4368 0.8756 6 6 2.8568 3.7518 -0.4806 7 6 3.3048 5.0158 -0.8721 8 6 3.6469 5.9789 0.0554 9 6 3.5580 5.7271 1.4083 10 9 3.8991 6.6857 2.2971 11 6 3.1136 4.4732 1.8636 12 6 3.0196 4.2088 3.2405 13 1 2.2339 3.5694 3.6151 14 6 3.9442 4.7741 4.1264 15 7 5.1206 5.1495 3.6932 16 14 3.4988 4.9927 5.9274 17 1 3.9984 3.8307 6.7055 18 1 4.1212 6.2384 6.4435 19 1 2.0230 5.0829 6.0649 20 16 2.3721 2.3596 -1.4435 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.1408 1.7310 2.0837 27 1 3.3860 5.2442 -1.9246 28 1 3.9890 6.9454 -0.2839 29 1 5.7614 5.5409 4.3072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320075.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:55 Heat of formation + Delta-G solvation = -34.700852 kcal Electronic energy + Delta-G solvation = -15586.789696 eV Core-core repulsion = 12900.315755 eV Total energy + Delta-G solvation = -2686.473942 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.95403 -39.71091 -36.69813 -35.69913 -33.40114 -31.74954 -29.11081 -27.13608 -24.98219 -23.62511 -22.25368 -20.80125 -19.64299 -18.03809 -17.33924 -16.83932 -16.65009 -15.96059 -15.72496 -15.10328 -14.83909 -14.54622 -14.41336 -14.00131 -13.50432 -13.38645 -13.27544 -13.14240 -12.76947 -12.60469 -12.23796 -12.16022 -11.81779 -11.48815 -11.45989 -11.29277 -10.99460 -9.93588 -9.01790 -8.88821 -8.46123 -6.43426 0.02508 0.72834 0.88220 1.27158 1.33968 1.42474 1.51134 1.69529 2.12572 2.55150 3.32410 3.85006 4.11037 4.26634 4.30472 4.41187 4.52978 4.69058 4.88454 4.94913 5.02583 5.08511 5.12201 5.15039 5.33010 5.40348 5.46394 5.68989 5.81662 5.85731 6.00544 6.32718 6.59870 6.77849 8.11257 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.008287 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.393159 B = 3378.178592 C = 4341.538085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.097 4.097 5 C -0.173 4.173 6 C -0.117 4.117 7 C -0.205 4.205 8 C -0.094 4.094 9 C -0.041 4.041 10 F -0.157 7.157 11 C 0.094 3.906 12 C -0.466 4.466 13 H 0.093 0.907 14 C 0.038 3.962 15 N -0.788 5.788 16 Si 0.983 3.017 17 H -0.254 1.254 18 H -0.267 1.267 19 H -0.255 1.255 20 S 0.063 5.937 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 -6.121 -3.198 8.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.317 4.317 4 C -0.126 4.126 5 C -0.180 4.180 6 C -0.232 4.232 7 C -0.230 4.230 8 C -0.115 4.115 9 C -0.064 4.064 10 F -0.136 7.136 11 C 0.088 3.912 12 C -0.492 4.492 13 H 0.111 0.889 14 C -0.183 4.183 15 N -0.410 5.410 16 Si 0.802 3.198 17 H -0.178 1.178 18 H -0.192 1.192 19 H -0.178 1.178 20 S 0.326 5.674 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.645 -6.381 -4.639 9.155 hybrid contribution 0.486 1.077 2.363 2.642 sum -4.159 -5.304 -2.276 7.114 Atomic orbital electron populations 1.21754 0.93745 1.02684 1.01763 1.20111 0.96642 0.87899 1.03586 1.24105 1.11464 1.01927 0.94206 1.19634 1.00963 0.92737 0.99307 1.19270 1.11978 0.94947 0.91846 1.22656 1.05481 0.98919 0.96111 1.19637 1.12787 0.91994 0.98544 1.20632 1.00074 0.99795 0.90998 1.17600 1.14874 0.87452 0.86449 1.91257 1.91022 1.62287 1.69040 1.18684 0.90161 0.89002 0.93344 1.19651 1.11635 1.26584 0.91374 0.88940 1.26841 0.93100 0.91796 1.06575 1.69830 1.04858 1.25774 1.40525 0.85164 0.80241 0.79220 0.75142 1.17774 1.19172 1.17814 1.83154 1.71136 1.04151 1.08964 0.93429 0.92973 0.89969 0.89690 0.89901 0.85344 0.85333 0.85255 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.89 71.98 0.71 -2.50 15 2 C -0.04 -1.12 6.39 29.85 0.19 -0.93 15 3 C -0.20 -7.24 5.69 24.52 0.14 -7.10 15 4 C -0.10 -4.17 9.64 21.54 0.21 -3.96 15 5 C -0.17 -8.61 6.02 -19.95 -0.12 -8.73 15 6 C -0.12 -5.32 6.49 22.97 0.15 -5.17 15 7 C -0.20 -9.08 10.01 22.57 0.23 -8.85 15 8 C -0.09 -4.41 9.93 22.14 0.22 -4.19 15 9 C -0.04 -2.21 6.69 22.77 0.15 -2.06 15 10 F -0.16 -8.69 14.14 44.97 0.64 -8.06 15 11 C 0.09 5.11 5.61 -19.60 -0.11 5.00 15 12 C -0.47 -24.72 8.66 23.25 0.20 -24.52 15 13 H 0.09 4.64 7.93 -2.91 -0.02 4.62 15 14 C 0.04 1.88 4.39 85.26 0.37 2.25 15 15 N -0.79 -41.61 11.16 21.84 0.24 -41.36 15 16 Si 0.98 37.69 29.62 68.60 2.03 39.72 15 17 H -0.25 -9.05 7.11 99.48 0.71 -8.34 15 18 H -0.27 -9.96 7.11 99.48 0.71 -9.25 15 19 H -0.25 -9.57 7.11 99.48 0.71 -8.86 15 20 S 0.06 2.31 23.27 -56.49 -1.31 1.00 15 21 H 0.05 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.05 1.20 8.14 -2.39 -0.02 1.19 15 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 15 24 H 0.08 2.06 8.14 -2.38 -0.02 2.04 15 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.13 5.29 8.02 -2.91 -0.02 5.27 15 27 H 0.13 4.83 8.06 -2.91 -0.02 4.81 15 28 H 0.13 5.30 8.06 -2.91 -0.02 5.27 15 29 H 0.30 14.10 8.30 -92.71 -0.77 13.33 15 Total: -1.00 -60.10 269.99 5.10 -55.00 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.16 Total: 14.46 kcal Atomic # 6 Polarization: -63.10 SS G_CDS: 2.34 Total: -60.76 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.24 Total: -41.36 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 0.64 Total: -8.06 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 1.00 kcal Total: -60.10 5.10 -55.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320075.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.294 kcal (2) G-P(sol) polarization free energy of solvation -60.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds