Wall clock time and date at job start Mon Mar 30 2020 05:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46823 * 2 1 4 4 C 1.31656 * 124.23083 * 90.00402 * 3 2 1 5 5 C 1.45613 * 114.89164 * 180.02562 * 4 3 2 6 6 C 1.40483 * 129.15241 * 180.02562 * 5 4 3 7 7 C 1.39892 * 120.01681 * 179.97438 * 6 5 4 8 8 C 1.41209 * 120.07930 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00547 * 150.04040 * 8 7 6 10 10 C 1.39864 * 120.00308 * 330.04517 * 8 7 6 11 11 N 1.30909 * 120.00449 * 161.70285 * 10 8 7 12 12 Si 1.86803 * 119.99509 * 341.70467 * 10 8 7 13 13 H 1.48499 * 109.47089 * 95.40150 * 12 10 8 14 14 H 1.48495 * 109.47186 * 215.40115 * 12 10 8 15 15 H 1.48501 * 109.47197 * 335.40328 * 12 10 8 16 16 C 1.41405 * 119.84998 * 0.02562 * 7 6 5 17 17 F 1.35098 * 119.98071 * 180.02562 * 16 7 6 18 18 C 1.35922 * 120.03793 * 0.02562 * 16 7 6 19 19 C 1.40192 * 111.75979 * 359.97438 * 5 4 3 20 20 S 1.75256 * 124.23517 * 269.70429 * 3 2 1 21 21 H 1.09002 * 109.46858 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46538 * 299.99752 * 1 2 3 23 23 H 1.08996 * 109.47247 * 59.99586 * 1 2 3 24 24 H 1.08994 * 109.47437 * 119.99903 * 2 1 3 25 25 H 1.08998 * 109.46791 * 240.00642 * 2 1 3 26 26 H 1.07995 * 122.55313 * 359.97438 * 4 3 2 27 27 H 1.07992 * 119.99511 * 359.97438 * 6 5 4 28 28 H 0.96992 * 119.99987 * 180.02562 * 11 10 8 29 29 H 1.08003 * 119.59600 * 180.02562 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2792 2.1191 1.0885 5 6 2.7575 3.4740 0.8522 6 6 3.1085 4.4657 1.7832 7 6 3.5506 5.7167 1.3399 8 6 3.9032 6.7147 2.2746 9 1 4.6571 7.4466 2.0247 10 6 3.2762 6.7556 3.5242 11 7 3.8233 7.4213 4.5097 12 14 1.6580 5.8600 3.7868 13 1 1.9229 4.5195 4.3682 14 1 0.8042 6.6427 4.7160 15 1 0.9606 5.7058 2.4848 16 6 3.6424 5.9801 -0.0463 17 9 4.0695 7.1871 -0.4774 18 6 3.3013 5.0195 -0.9454 19 6 2.8581 3.7583 -0.5169 20 16 2.3680 2.3480 -1.4489 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 2.1370 1.7178 2.0810 27 1 3.0371 4.2623 2.8414 28 1 3.3886 7.4493 5.3763 29 1 3.3746 5.2281 -2.0026 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396320112.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:36 Heat of formation + Delta-G solvation = -28.478995 kcal Electronic energy + Delta-G solvation = -15410.027971 eV Core-core repulsion = 12723.823830 eV Total energy + Delta-G solvation = -2686.204142 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.67836 -38.34443 -35.73257 -33.86982 -32.02371 -30.54650 -27.84424 -25.48929 -23.72299 -22.28856 -20.79387 -19.63337 -17.49118 -17.19183 -15.85908 -15.36438 -15.13778 -14.45329 -14.06708 -14.03031 -13.78027 -13.35550 -12.93797 -12.76539 -12.32255 -12.08759 -11.93491 -11.64225 -11.36069 -11.09695 -10.94057 -10.72728 -10.41542 -10.08078 -9.86821 -9.68970 -9.26726 -8.63661 -7.50555 -7.14988 -7.05409 -4.65635 1.50385 2.20260 2.23491 2.73904 2.87793 3.02297 3.15688 3.21922 3.84406 4.20867 4.87560 5.04998 5.14303 5.36153 5.48733 5.56750 5.62563 5.82908 5.87063 5.95343 6.18845 6.24233 6.33581 6.41901 6.69574 6.77871 6.90751 7.16943 7.20805 7.49613 7.68841 8.12909 8.31186 8.52663 9.85993 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024358 B = 0.008325 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.220207 B = 3362.381082 C = 4289.822331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C -0.162 4.162 4 C -0.121 4.121 5 C -0.030 4.030 6 C -0.209 4.209 7 C 0.067 3.933 8 C -0.429 4.429 9 H 0.099 0.901 10 C 0.085 3.915 11 N -0.792 5.792 12 Si 0.910 3.090 13 H -0.266 1.266 14 H -0.287 1.287 15 H -0.242 1.242 16 C 0.040 3.960 17 F -0.149 7.149 18 C -0.091 4.091 19 C -0.216 4.216 20 S 0.026 5.974 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.290 0.710 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 -10.211 -4.827 12.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.277 4.277 4 C -0.152 4.152 5 C -0.036 4.036 6 C -0.232 4.232 7 C 0.062 3.938 8 C -0.456 4.456 9 H 0.117 0.883 10 C -0.136 4.136 11 N -0.415 5.415 12 Si 0.735 3.265 13 H -0.192 1.192 14 H -0.214 1.214 15 H -0.165 1.165 16 C 0.018 3.982 17 F -0.127 7.127 18 C -0.114 4.114 19 C -0.330 4.330 20 S 0.286 5.714 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.131 0.869 28 H 0.100 0.900 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.164 -10.359 -6.096 13.082 hybrid contribution -0.378 0.326 1.723 1.794 sum -5.542 -10.033 -4.373 12.268 Atomic orbital electron populations 1.21778 0.94702 1.01374 1.02603 1.20088 0.95951 0.90365 1.02686 1.23566 1.07850 1.00027 0.96272 1.20861 1.02461 0.93427 0.98450 1.18941 0.99339 0.93038 0.92263 1.20538 1.13309 0.92186 0.97140 1.17497 0.92539 0.93243 0.90483 1.19429 1.18879 1.11335 0.96001 0.88309 1.26187 0.99540 0.93529 0.94344 1.69705 1.37084 1.32403 1.02317 0.86286 0.81168 0.78780 0.80217 1.19195 1.21380 1.16462 1.17269 1.07247 0.81112 0.92538 1.91359 1.88126 1.43073 1.90182 1.19563 1.02357 0.91349 0.98123 1.21514 1.18240 0.98074 0.95185 1.83348 1.73342 1.05914 1.08771 0.92494 0.92373 0.92390 0.90510 0.91110 0.85126 0.86921 0.89958 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.90 37.16 0.37 -1.25 15 2 C -0.05 -0.63 6.36 -27.88 -0.18 -0.81 15 3 C -0.16 -2.66 5.62 -36.18 -0.20 -2.87 15 4 C -0.12 -2.24 10.20 -38.51 -0.39 -2.63 15 5 C -0.03 -0.65 6.03 -105.38 -0.64 -1.29 15 6 C -0.21 -5.00 7.23 -38.12 -0.28 -5.27 15 7 C 0.07 1.70 5.10 -106.95 -0.55 1.15 15 8 C -0.43 -11.44 9.24 -37.85 -0.35 -11.79 15 9 H 0.10 2.79 7.97 -52.49 -0.42 2.37 15 10 C 0.09 2.17 5.39 -17.34 -0.09 2.07 15 11 N -0.79 -20.40 13.93 55.54 0.77 -19.63 15 12 Si 0.91 20.17 24.52 -169.99 -4.17 16.00 15 13 H -0.27 -5.65 6.71 56.52 0.38 -5.27 15 14 H -0.29 -6.09 7.11 56.52 0.40 -5.68 15 15 H -0.24 -5.57 6.87 56.52 0.39 -5.18 15 16 C 0.04 0.96 7.24 -39.21 -0.28 0.68 15 17 F -0.15 -3.53 16.74 2.25 0.04 -3.49 15 18 C -0.09 -1.97 9.95 -39.60 -0.39 -2.37 15 19 C -0.22 -4.61 6.51 -38.04 -0.25 -4.86 15 20 S 0.03 0.45 23.19 -107.50 -2.49 -2.04 15 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 15 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.13 2.15 8.06 -52.49 -0.42 1.73 15 27 H 0.11 2.64 4.72 -52.49 -0.25 2.39 15 28 H 0.29 6.69 8.30 -40.82 -0.34 6.35 15 29 H 0.11 2.16 8.06 -52.48 -0.42 1.74 15 LS Contribution 265.65 15.07 4.00 4.00 Total: -1.00 -26.73 265.65 -7.87 -34.60 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -2.79 Total: -0.21 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -3.23 Total: -29.23 kcal Atomic # 7 Polarization: -20.40 SS G_CDS: 0.77 Total: -19.63 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.04 Total: -3.49 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.17 Total: 16.00 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.49 Total: -2.04 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.73 -7.87 -34.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320112.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.119 kcal (2) G-P(sol) polarization free energy of solvation -26.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds