Wall clock time and date at job start Mon Mar 30 2020 05:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46823 * 2 1 4 4 C 1.31656 * 124.23083 * 90.00402 * 3 2 1 5 5 C 1.45613 * 114.89164 * 180.02562 * 4 3 2 6 6 C 1.40483 * 129.15241 * 180.02562 * 5 4 3 7 7 C 1.39892 * 120.01681 * 179.97438 * 6 5 4 8 8 C 1.41209 * 120.07930 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00547 * 150.04040 * 8 7 6 10 10 C 1.39864 * 120.00308 * 330.04517 * 8 7 6 11 11 N 1.30909 * 120.00449 * 161.70285 * 10 8 7 12 12 Si 1.86803 * 119.99509 * 341.70467 * 10 8 7 13 13 H 1.48499 * 109.47089 * 95.40150 * 12 10 8 14 14 H 1.48495 * 109.47186 * 215.40115 * 12 10 8 15 15 H 1.48501 * 109.47197 * 335.40328 * 12 10 8 16 16 C 1.41405 * 119.84998 * 0.02562 * 7 6 5 17 17 F 1.35098 * 119.98071 * 180.02562 * 16 7 6 18 18 C 1.35922 * 120.03793 * 0.02562 * 16 7 6 19 19 C 1.40192 * 111.75979 * 359.97438 * 5 4 3 20 20 S 1.75256 * 124.23517 * 269.70429 * 3 2 1 21 21 H 1.09002 * 109.46858 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46538 * 299.99752 * 1 2 3 23 23 H 1.08996 * 109.47247 * 59.99586 * 1 2 3 24 24 H 1.08994 * 109.47437 * 119.99903 * 2 1 3 25 25 H 1.08998 * 109.46791 * 240.00642 * 2 1 3 26 26 H 1.07995 * 122.55313 * 359.97438 * 4 3 2 27 27 H 1.07992 * 119.99511 * 359.97438 * 6 5 4 28 28 H 0.96992 * 119.99987 * 180.02562 * 11 10 8 29 29 H 1.08003 * 119.59600 * 180.02562 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2792 2.1191 1.0885 5 6 2.7575 3.4740 0.8522 6 6 3.1085 4.4657 1.7832 7 6 3.5506 5.7167 1.3399 8 6 3.9032 6.7147 2.2746 9 1 4.6571 7.4466 2.0247 10 6 3.2762 6.7556 3.5242 11 7 3.8233 7.4213 4.5097 12 14 1.6580 5.8600 3.7868 13 1 1.9229 4.5195 4.3682 14 1 0.8042 6.6427 4.7160 15 1 0.9606 5.7058 2.4848 16 6 3.6424 5.9801 -0.0463 17 9 4.0695 7.1871 -0.4774 18 6 3.3013 5.0195 -0.9454 19 6 2.8581 3.7583 -0.5169 20 16 2.3680 2.3480 -1.4489 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 2.1370 1.7178 2.0810 27 1 3.0371 4.2623 2.8414 28 1 3.3886 7.4493 5.3763 29 1 3.3746 5.2281 -2.0026 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320112.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:36 Heat of formation + Delta-G solvation = -41.974080 kcal Electronic energy + Delta-G solvation = -15410.613162 eV Core-core repulsion = 12723.823830 eV Total energy + Delta-G solvation = -2686.789332 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.54630 -40.03957 -37.18174 -35.61253 -33.43818 -32.32100 -29.36444 -27.30583 -24.93039 -24.04875 -22.29818 -21.18903 -19.33301 -18.88524 -17.54415 -16.99694 -16.85053 -16.31752 -15.68821 -15.37274 -15.03500 -14.87589 -14.63422 -14.33973 -13.81717 -13.74650 -13.41612 -13.23552 -12.78199 -12.60846 -12.39709 -12.15338 -11.85140 -11.71770 -11.53774 -11.32211 -11.01071 -10.34534 -9.21247 -9.03998 -8.62186 -6.61220 -0.10988 0.39350 0.75787 1.18157 1.18837 1.24894 1.43211 1.47943 2.04580 2.38371 3.15174 3.63263 3.74134 3.90025 4.24759 4.31141 4.46159 4.48278 4.52889 4.80213 4.90152 4.97386 5.01453 5.08377 5.09810 5.26811 5.38427 5.39681 5.51044 5.71720 5.84071 6.13932 6.42502 6.58333 8.03862 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024358 B = 0.008325 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.220207 B = 3362.381082 C = 4289.822331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C -0.138 4.138 4 C -0.150 4.150 5 C -0.041 4.041 6 C -0.217 4.217 7 C 0.053 3.947 8 C -0.471 4.471 9 H 0.061 0.939 10 C 0.054 3.946 11 N -0.831 5.831 12 Si 0.961 3.039 13 H -0.247 1.247 14 H -0.270 1.270 15 H -0.258 1.258 16 C 0.011 3.989 17 F -0.156 7.156 18 C -0.083 4.083 19 C -0.231 4.231 20 S 0.076 5.924 21 H 0.083 0.917 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.152 0.848 27 H 0.114 0.886 28 H 0.300 0.700 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 -13.918 -5.957 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.092 4.092 3 C -0.254 4.254 4 C -0.180 4.180 5 C -0.048 4.048 6 C -0.239 4.239 7 C 0.048 3.952 8 C -0.500 4.500 9 H 0.079 0.921 10 C -0.163 4.163 11 N -0.456 5.456 12 Si 0.784 3.216 13 H -0.172 1.172 14 H -0.196 1.196 15 H -0.182 1.182 16 C -0.011 4.011 17 F -0.135 7.135 18 C -0.106 4.106 19 C -0.346 4.346 20 S 0.337 5.663 21 H 0.102 0.898 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.170 0.830 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.060 -14.068 -7.232 17.322 hybrid contribution 0.197 1.247 1.814 2.210 sum -6.863 -12.821 -5.418 15.519 Atomic orbital electron populations 1.21781 0.93462 1.03075 1.02027 1.20319 0.96832 0.87459 1.04635 1.24220 1.04523 1.01584 0.95031 1.20954 1.04613 0.92041 1.00391 1.19365 0.98708 0.94419 0.92278 1.20630 1.13379 0.92133 0.97775 1.17647 0.92995 0.93574 0.90956 1.19327 1.20392 1.12353 0.97934 0.92097 1.26806 1.01780 0.94117 0.93608 1.69716 1.38610 1.34228 1.03064 0.85520 0.77620 0.78907 0.79590 1.17220 1.19579 1.18154 1.17525 1.08959 0.81774 0.92808 1.91328 1.88420 1.43589 1.90128 1.19840 1.00684 0.91006 0.99088 1.22079 1.16729 0.99373 0.96378 1.83249 1.71950 1.03084 1.08040 0.89770 0.93033 0.92946 0.88488 0.89283 0.83037 0.86846 0.88904 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.90 71.98 0.71 -1.76 15 2 C -0.05 -1.01 6.36 29.85 0.19 -0.82 15 3 C -0.14 -3.93 5.62 25.03 0.14 -3.79 15 4 C -0.15 -5.05 10.20 23.52 0.24 -4.81 15 5 C -0.04 -1.73 6.03 -20.35 -0.12 -1.86 15 6 C -0.22 -10.41 7.23 23.22 0.17 -10.24 15 7 C 0.05 2.77 5.10 -21.37 -0.11 2.66 15 8 C -0.47 -26.84 9.24 23.39 0.22 -26.63 15 9 H 0.06 3.78 7.97 -2.91 -0.02 3.75 15 10 C 0.05 2.87 5.39 85.22 0.46 3.33 15 11 N -0.83 -44.72 13.93 21.82 0.30 -44.42 15 12 Si 0.96 41.95 24.52 68.60 1.68 43.64 15 13 H -0.25 -9.94 6.71 99.48 0.67 -9.28 15 14 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 15 H -0.26 -11.78 6.87 99.48 0.68 -11.09 15 16 C 0.01 0.53 7.24 22.51 0.16 0.70 15 17 F -0.16 -7.75 16.74 44.97 0.75 -6.99 15 18 C -0.08 -3.56 9.95 22.25 0.22 -3.34 15 19 C -0.23 -9.41 6.51 23.27 0.15 -9.26 15 20 S 0.08 2.35 23.19 -56.49 -1.31 1.04 15 21 H 0.08 1.02 8.14 -2.39 -0.02 1.00 15 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 15 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 15 24 H 0.10 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 26 H 0.15 4.43 8.06 -2.91 -0.02 4.41 15 27 H 0.11 5.31 4.72 -2.91 -0.01 5.29 15 28 H 0.30 14.28 8.30 -92.71 -0.77 13.51 15 29 H 0.14 5.08 8.06 -2.91 -0.02 5.06 15 Total: -1.00 -60.20 265.65 4.97 -55.23 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.11 Total: 7.32 kcal Atomic # 6 Polarization: -58.25 SS G_CDS: 2.43 Total: -55.82 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.30 Total: -44.42 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.75 Total: -6.99 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.68 Total: 43.64 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.04 kcal Total: -60.20 4.97 -55.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320112.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.261 kcal (2) G-P(sol) polarization free energy of solvation -60.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds