Wall clock time and date at job start Mon Mar 30 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47199 * 2 1 4 4 C 1.33153 * 122.13555 * 96.42891 * 3 2 1 5 5 F 1.35106 * 124.68031 * 359.97438 * 4 3 2 6 6 S 1.75505 * 110.63285 * 180.26898 * 4 3 2 7 7 C 1.76073 * 91.53237 * 359.67774 * 6 4 3 8 8 C 1.39498 * 130.57166 * 180.02562 * 7 6 4 9 9 C 1.38206 * 121.46494 * 180.31465 * 8 7 6 10 10 C 1.37598 * 121.09650 * 359.95549 * 9 8 7 11 11 C 1.40348 * 120.12318 * 0.02562 * 10 9 8 12 12 C 1.40567 * 120.40587 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99804 * 137.64266 * 12 11 10 14 14 C 1.39967 * 119.99876 * 317.64348 * 12 11 10 15 15 N 1.30856 * 119.99408 * 182.28489 * 14 12 11 16 16 Si 1.86796 * 119.99871 * 2.28228 * 14 12 11 17 17 H 1.48496 * 109.46890 * 84.55703 * 16 14 12 18 18 H 1.48504 * 109.46698 * 204.55067 * 16 14 12 19 19 H 1.48495 * 109.47719 * 324.55145 * 16 14 12 20 20 C 1.39794 * 109.36052 * 0.31531 * 7 6 4 21 21 H 1.09004 * 109.46886 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47191 * 299.99692 * 1 2 3 23 23 H 1.08998 * 109.47282 * 60.00067 * 1 2 3 24 24 H 1.09005 * 109.47261 * 239.99765 * 2 1 3 25 25 H 1.08998 * 109.47282 * 119.99933 * 2 1 3 26 26 H 1.07996 * 119.27324 * 0.26773 * 8 7 6 27 27 H 1.07999 * 119.45394 * 179.97438 * 9 8 7 28 28 H 1.07998 * 119.93486 * 180.02562 * 10 9 8 29 29 H 0.97008 * 119.99723 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3875 2.0464 1.1204 5 9 2.3408 1.4988 2.3546 6 16 2.9166 3.6835 0.7735 7 6 2.6383 3.4586 -0.9505 8 6 2.8193 4.3349 -2.0206 9 6 2.5306 3.9579 -3.3186 10 6 2.0530 2.6993 -3.6035 11 6 1.8501 1.7722 -2.5695 12 6 1.3629 0.4847 -2.8539 13 1 1.7912 -0.3757 -2.3612 14 6 0.3229 0.3177 -3.7755 15 7 -0.1608 -0.8759 -4.0070 16 14 -0.3746 1.7988 -4.6750 17 1 0.4586 2.0902 -5.8692 18 1 -1.7669 1.5081 -5.1020 19 1 -0.3702 2.9755 -3.7692 20 6 2.1549 2.1666 -1.1772 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.1928 5.3303 -1.8307 27 1 2.6826 4.6627 -4.1226 28 1 1.8339 2.4244 -4.6246 29 1 -0.8819 -0.9917 -4.6455 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396320144.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:59 Heat of formation + Delta-G solvation = -12.467268 kcal Electronic energy + Delta-G solvation = -16025.297111 eV Core-core repulsion = 13339.787290 eV Total energy + Delta-G solvation = -2685.509821 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.18545 -38.67586 -35.16098 -34.02521 -31.43666 -30.32467 -27.97524 -25.16837 -23.77069 -21.65567 -21.19184 -19.04920 -18.20204 -16.86039 -15.89186 -15.56009 -15.15587 -14.93058 -14.29074 -13.82389 -13.29302 -12.88880 -12.79878 -12.71315 -12.31968 -11.89598 -11.81099 -11.35835 -11.30573 -10.79909 -10.69742 -10.49788 -10.06950 -9.87318 -9.73702 -9.46992 -9.30499 -8.44011 -7.50915 -7.18829 -6.87950 -4.71709 1.44749 1.95471 2.31406 2.55276 2.93491 3.00743 3.15358 3.19077 3.80137 4.25778 4.97746 5.14491 5.66224 5.77405 5.82343 6.06744 6.14602 6.16855 6.33556 6.40786 6.48179 6.61863 6.75489 6.84599 6.91912 7.00489 7.09826 7.33247 7.40746 7.60150 7.65304 8.08550 8.29924 8.45717 9.83883 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.010893 C = 0.007908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.186326 B = 2569.813866 C = 3539.731955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.042 4.042 4 C -0.080 4.080 5 F -0.119 7.119 6 S 0.030 5.970 7 C -0.067 4.067 8 C -0.215 4.215 9 C -0.042 4.042 10 C -0.251 4.251 11 C 0.140 3.860 12 C -0.425 4.425 13 H 0.110 0.890 14 C 0.084 3.916 15 N -0.796 5.796 16 Si 0.907 3.093 17 H -0.265 1.265 18 H -0.290 1.290 19 H -0.240 1.240 20 C -0.153 4.153 21 H 0.051 0.949 22 H 0.038 0.962 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 4.069 2.305 4.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 C -0.055 4.055 4 C -0.212 4.212 5 F -0.098 7.098 6 S 0.291 5.709 7 C -0.182 4.182 8 C -0.240 4.240 9 C -0.063 4.063 10 C -0.272 4.272 11 C 0.134 3.866 12 C -0.452 4.452 13 H 0.127 0.873 14 C -0.137 4.137 15 N -0.419 5.419 16 Si 0.734 3.266 17 H -0.191 1.191 18 H -0.217 1.217 19 H -0.163 1.163 20 C -0.159 4.159 21 H 0.070 0.930 22 H 0.057 0.943 23 H 0.089 0.911 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.405 4.947 3.253 6.085 hybrid contribution -0.804 -0.621 -0.974 1.408 sum 0.600 4.326 2.279 4.926 Atomic orbital electron populations 1.21552 0.94563 1.01127 1.01728 1.20530 0.96677 0.91173 1.02877 1.18768 0.98332 0.97798 0.90624 1.20834 1.20580 0.97252 0.82491 1.91363 1.95590 1.84297 1.38549 1.83714 1.73521 1.11316 1.02327 1.22134 1.03874 0.97890 0.94288 1.19557 1.14840 0.98591 0.91014 1.20440 0.95711 0.95338 0.94792 1.20902 1.12373 0.96056 0.97902 1.18496 0.87738 0.92656 0.87706 1.19617 1.13876 0.93330 1.18372 0.87296 1.26145 0.95878 0.97508 0.94160 1.69585 1.21308 1.23546 1.27491 0.86377 0.77043 0.82558 0.80662 1.19122 1.21731 1.16319 1.18626 1.11911 0.92307 0.93059 0.93001 0.94306 0.91074 0.88174 0.92805 0.88101 0.87740 0.87212 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.64 37.16 0.36 -2.21 15 2 C -0.07 -1.48 5.35 -27.88 -0.15 -1.63 15 3 C -0.04 -0.91 5.08 -105.77 -0.54 -1.45 15 4 C -0.08 -1.66 8.14 28.96 0.24 -1.42 15 5 F -0.12 -2.38 16.88 2.25 0.04 -2.34 15 6 S 0.03 0.59 23.29 -107.50 -2.50 -1.92 15 7 C -0.07 -1.43 6.48 -38.53 -0.25 -1.68 15 8 C -0.21 -4.31 10.01 -39.12 -0.39 -4.70 15 9 C -0.04 -0.83 9.96 -39.83 -0.40 -1.23 15 10 C -0.25 -5.51 6.84 -39.02 -0.27 -5.77 15 11 C 0.14 3.26 5.22 -104.28 -0.54 2.72 15 12 C -0.42 -10.13 7.04 -38.06 -0.27 -10.40 15 13 H 0.11 2.69 5.30 -52.49 -0.28 2.42 15 14 C 0.08 1.96 5.52 -17.32 -0.10 1.86 15 15 N -0.80 -19.00 13.93 55.55 0.77 -18.23 15 16 Si 0.91 18.95 24.49 -169.99 -4.16 14.79 15 17 H -0.27 -5.34 6.68 56.52 0.38 -4.96 15 18 H -0.29 -5.93 7.11 56.52 0.40 -5.52 15 19 H -0.24 -5.20 6.57 56.52 0.37 -4.83 15 20 C -0.15 -3.50 6.02 -104.75 -0.63 -4.13 15 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.04 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.07 1.52 7.09 -51.93 -0.37 1.16 15 24 H 0.10 2.12 4.83 -51.93 -0.25 1.87 15 25 H 0.05 1.00 7.78 -51.93 -0.40 0.60 15 26 H 0.10 1.77 8.06 -52.49 -0.42 1.35 15 27 H 0.10 1.73 8.06 -52.49 -0.42 1.30 15 28 H 0.11 2.34 4.76 -52.49 -0.25 2.09 15 29 H 0.29 6.35 8.30 -40.82 -0.34 6.01 15 LS Contribution 254.70 15.07 3.84 3.84 Total: -1.00 -24.27 254.70 -7.38 -31.65 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -2.43 Total: 2.26 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -2.93 Total: -30.05 kcal Atomic # 7 Polarization: -19.00 SS G_CDS: 0.77 Total: -18.23 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.16 Total: 14.79 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -2.50 Total: -1.92 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -24.27 -7.38 -31.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320144.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.186 kcal (2) G-P(sol) polarization free energy of solvation -24.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds