Wall clock time and date at job start Mon Mar 30 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47199 * 2 1 4 4 C 1.33153 * 122.13555 * 96.42891 * 3 2 1 5 5 F 1.35106 * 124.68031 * 359.97438 * 4 3 2 6 6 S 1.75505 * 110.63285 * 180.26898 * 4 3 2 7 7 C 1.76073 * 91.53237 * 359.67774 * 6 4 3 8 8 C 1.39498 * 130.57166 * 180.02562 * 7 6 4 9 9 C 1.38206 * 121.46494 * 180.31465 * 8 7 6 10 10 C 1.37598 * 121.09650 * 359.95549 * 9 8 7 11 11 C 1.40348 * 120.12318 * 0.02562 * 10 9 8 12 12 C 1.40567 * 120.40587 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99804 * 137.64266 * 12 11 10 14 14 C 1.39967 * 119.99876 * 317.64348 * 12 11 10 15 15 N 1.30856 * 119.99408 * 182.28489 * 14 12 11 16 16 Si 1.86796 * 119.99871 * 2.28228 * 14 12 11 17 17 H 1.48496 * 109.46890 * 84.55703 * 16 14 12 18 18 H 1.48504 * 109.46698 * 204.55067 * 16 14 12 19 19 H 1.48495 * 109.47719 * 324.55145 * 16 14 12 20 20 C 1.39794 * 109.36052 * 0.31531 * 7 6 4 21 21 H 1.09004 * 109.46886 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47191 * 299.99692 * 1 2 3 23 23 H 1.08998 * 109.47282 * 60.00067 * 1 2 3 24 24 H 1.09005 * 109.47261 * 239.99765 * 2 1 3 25 25 H 1.08998 * 109.47282 * 119.99933 * 2 1 3 26 26 H 1.07996 * 119.27324 * 0.26773 * 8 7 6 27 27 H 1.07999 * 119.45394 * 179.97438 * 9 8 7 28 28 H 1.07998 * 119.93486 * 180.02562 * 10 9 8 29 29 H 0.97008 * 119.99723 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3875 2.0464 1.1204 5 9 2.3408 1.4988 2.3546 6 16 2.9166 3.6835 0.7735 7 6 2.6383 3.4586 -0.9505 8 6 2.8193 4.3349 -2.0206 9 6 2.5306 3.9579 -3.3186 10 6 2.0530 2.6993 -3.6035 11 6 1.8501 1.7722 -2.5695 12 6 1.3629 0.4847 -2.8539 13 1 1.7912 -0.3757 -2.3612 14 6 0.3229 0.3177 -3.7755 15 7 -0.1608 -0.8759 -4.0070 16 14 -0.3746 1.7988 -4.6750 17 1 0.4586 2.0902 -5.8692 18 1 -1.7669 1.5081 -5.1020 19 1 -0.3702 2.9755 -3.7692 20 6 2.1549 2.1666 -1.1772 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.1928 5.3303 -1.8307 27 1 2.6826 4.6627 -4.1226 28 1 1.8339 2.4244 -4.6246 29 1 -0.8819 -0.9917 -4.6455 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320144.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:58 Heat of formation + Delta-G solvation = -23.306634 kcal Electronic energy + Delta-G solvation = -16025.767141 eV Core-core repulsion = 13339.787290 eV Total energy + Delta-G solvation = -2685.979851 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.81672 -40.32930 -36.79367 -35.73175 -33.09891 -31.97894 -29.62051 -26.87713 -25.38927 -23.29144 -22.87578 -20.68601 -19.90084 -18.50419 -17.53538 -17.20958 -16.79168 -16.57689 -15.90796 -15.49437 -14.91507 -14.53571 -14.46270 -14.31537 -13.95578 -13.56177 -13.40495 -13.00539 -12.95881 -12.39357 -12.33905 -12.14480 -11.67269 -11.54444 -11.36930 -11.11084 -10.98947 -10.10140 -9.13942 -8.90194 -8.51707 -6.48298 -0.21580 0.34863 0.63455 0.91394 1.28165 1.32932 1.48249 1.53791 2.12048 2.55728 3.26256 3.48813 4.05216 4.18020 4.28746 4.45561 4.52910 4.58012 4.71053 4.79454 4.84671 5.03209 5.13968 5.17994 5.28163 5.36707 5.46847 5.66521 5.76531 5.92389 6.00579 6.31615 6.59545 6.70615 8.15654 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.010893 C = 0.007908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.186326 B = 2569.813866 C = 3539.731955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C -0.062 4.062 4 C -0.085 4.085 5 F -0.115 7.115 6 S 0.090 5.910 7 C -0.094 4.094 8 C -0.205 4.205 9 C -0.041 4.041 10 C -0.263 4.263 11 C 0.122 3.878 12 C -0.445 4.445 13 H 0.086 0.914 14 C 0.056 3.944 15 N -0.833 5.833 16 Si 0.950 3.050 17 H -0.250 1.250 18 H -0.285 1.285 19 H -0.251 1.251 20 C -0.173 4.173 21 H 0.062 0.938 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.133 0.867 27 H 0.145 0.855 28 H 0.114 0.886 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 6.343 2.586 7.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.110 4.110 3 C -0.075 4.075 4 C -0.217 4.217 5 F -0.094 7.094 6 S 0.351 5.649 7 C -0.209 4.209 8 C -0.230 4.230 9 C -0.062 4.062 10 C -0.285 4.285 11 C 0.117 3.883 12 C -0.473 4.473 13 H 0.104 0.896 14 C -0.161 4.161 15 N -0.458 5.458 16 Si 0.774 3.226 17 H -0.175 1.175 18 H -0.212 1.212 19 H -0.175 1.175 20 C -0.180 4.180 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.162 0.838 28 H 0.131 0.869 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.946 7.223 3.540 8.276 hybrid contribution -0.848 -1.205 -0.910 1.732 sum 1.098 6.018 2.630 6.659 Atomic orbital electron populations 1.21458 0.94127 1.01621 1.00883 1.20476 0.97026 0.90815 1.02641 1.18928 0.99243 0.98503 0.90869 1.21107 1.19719 0.98434 0.82426 1.91375 1.95490 1.84456 1.38076 1.83443 1.72414 1.09080 0.99927 1.22556 1.04180 0.97802 0.96379 1.20036 1.12807 0.99528 0.90638 1.20883 0.94130 0.95127 0.96063 1.21103 1.12711 0.96912 0.97757 1.18691 0.88158 0.92866 0.88569 1.19503 1.15130 0.93173 1.19516 0.89590 1.26628 0.95822 0.99131 0.94504 1.69614 1.22529 1.24699 1.28948 0.85737 0.76988 0.79834 0.80024 1.17542 1.21229 1.17519 1.18873 1.12415 0.93402 0.93278 0.91899 0.93248 0.93564 0.89827 0.91475 0.84933 0.83772 0.86868 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 9.64 71.98 0.69 -4.15 15 2 C -0.07 -2.89 5.35 29.85 0.16 -2.73 15 3 C -0.06 -2.68 5.08 -20.61 -0.10 -2.78 15 4 C -0.08 -3.40 8.14 66.68 0.54 -2.85 15 5 F -0.11 -4.39 16.88 44.97 0.76 -3.63 15 6 S 0.09 3.22 23.29 -56.49 -1.32 1.90 15 7 C -0.09 -3.82 6.48 22.95 0.15 -3.67 15 8 C -0.21 -7.49 10.01 22.57 0.23 -7.27 15 9 C -0.04 -1.50 9.96 22.11 0.22 -1.28 15 10 C -0.26 -11.18 6.84 22.63 0.15 -11.02 15 11 C 0.12 5.74 5.22 -19.64 -0.10 5.64 15 12 C -0.44 -21.96 7.04 23.26 0.16 -21.80 15 13 H 0.09 4.52 5.30 -2.91 -0.02 4.51 15 14 C 0.06 2.67 5.52 85.26 0.47 3.14 15 15 N -0.83 -41.04 13.93 21.83 0.30 -40.73 15 16 Si 0.95 38.74 24.49 68.60 1.68 40.42 15 17 H -0.25 -9.50 6.68 99.48 0.66 -8.83 15 18 H -0.29 -11.25 7.11 99.48 0.71 -10.54 15 19 H -0.25 -10.60 6.57 99.48 0.65 -9.95 15 20 C -0.17 -7.86 6.02 -19.94 -0.12 -7.98 15 21 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.05 2.03 7.09 -2.39 -0.02 2.02 15 24 H 0.08 3.72 4.83 -2.38 -0.01 3.71 15 25 H 0.07 2.49 7.78 -2.39 -0.02 2.47 15 26 H 0.13 3.98 8.06 -2.91 -0.02 3.96 15 27 H 0.14 4.06 8.06 -2.91 -0.02 4.04 15 28 H 0.11 4.65 4.76 -2.91 -0.01 4.64 15 29 H 0.30 13.28 8.30 -92.70 -0.77 12.52 15 Total: -1.00 -51.22 254.70 4.98 -46.25 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.09 Total: 12.55 kcal Atomic # 6 Polarization: -59.20 SS G_CDS: 2.45 Total: -56.75 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.30 Total: -40.73 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.76 Total: -3.63 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.68 Total: 40.42 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.32 Total: 1.90 kcal Total: -51.22 4.98 -46.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320144.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.938 kcal (2) G-P(sol) polarization free energy of solvation -51.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds