Wall clock time and date at job start Mon Mar 30 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47027 * 2 1 4 4 C 1.32524 * 124.59941 * 89.72169 * 3 2 1 5 5 C 1.40459 * 115.87635 * 179.79484 * 4 3 2 6 6 C 1.42116 * 128.59049 * 180.16783 * 5 4 3 7 7 C 1.35138 * 120.94526 * 180.36011 * 6 5 4 8 8 C 1.41261 * 120.41375 * 359.97438 * 7 6 5 9 9 C 1.40931 * 120.22785 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00202 * 154.33603 * 9 8 7 11 11 C 1.39844 * 120.00003 * 334.33545 * 9 8 7 12 12 N 1.30920 * 120.00222 * 343.25801 * 11 9 8 13 13 Si 1.86803 * 119.99810 * 163.26188 * 11 9 8 14 14 H 1.48506 * 109.47061 * 90.00064 * 13 11 9 15 15 H 1.48510 * 109.47006 * 209.99748 * 13 11 9 16 16 H 1.48489 * 109.47435 * 329.99820 * 13 11 9 17 17 C 1.40619 * 119.54568 * 359.93031 * 8 7 6 18 18 F 1.35105 * 120.04667 * 180.02562 * 17 8 7 19 19 C 1.39192 * 119.90982 * 0.15925 * 17 8 7 20 20 S 1.75479 * 124.59618 * 270.03013 * 3 2 1 21 21 H 1.08998 * 109.46714 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47232 * 299.99815 * 1 2 3 23 23 H 1.09004 * 109.47320 * 60.00462 * 1 2 3 24 24 H 1.08996 * 109.47560 * 119.99758 * 2 1 3 25 25 H 1.09000 * 109.47232 * 240.00185 * 2 1 3 26 26 H 1.07997 * 122.05719 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.52981 * 0.33260 * 6 5 4 28 28 H 1.08007 * 119.79560 * 179.97438 * 7 6 5 29 29 H 0.96996 * 120.00336 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2781 2.1321 1.0908 5 6 2.7461 3.4392 0.8779 6 6 3.0940 4.4242 1.8414 7 6 3.5249 5.6471 1.4606 8 6 3.6386 5.9706 0.0902 9 6 4.0889 7.2469 -0.3025 10 1 4.5651 7.3798 -1.2628 11 6 3.9193 8.3415 0.5511 12 7 3.0725 8.2700 1.5470 13 14 4.9009 9.9059 0.2703 14 1 4.1443 10.8095 -0.6332 15 1 5.1315 10.5856 1.5705 16 1 6.2069 9.5663 -0.3492 17 6 3.3013 5.0096 -0.8794 18 9 3.4068 5.3079 -2.1929 19 6 2.8560 3.7515 -0.4841 20 16 2.3637 2.3605 -1.4445 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.1306 1.7304 2.0824 27 1 3.0125 4.1923 2.8930 28 1 3.7840 6.3819 2.2086 29 1 2.9550 9.0290 2.1393 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320171.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:37 Heat of formation + Delta-G solvation = -43.710552 kcal Electronic energy + Delta-G solvation = -15322.637668 eV Core-core repulsion = 12635.773036 eV Total energy + Delta-G solvation = -2686.864632 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.24337 -39.96753 -37.29395 -35.48523 -33.28147 -31.20830 -30.09435 -27.09376 -24.69638 -23.86211 -22.28714 -20.96433 -19.60459 -18.26018 -17.39656 -17.01347 -16.58139 -16.15337 -15.65140 -15.27484 -15.12434 -14.45590 -14.36756 -14.09872 -13.84590 -13.38149 -13.19505 -12.92296 -12.80342 -12.43373 -12.36315 -12.09711 -11.81255 -11.69344 -11.53582 -11.36050 -10.97865 -10.17960 -9.20622 -8.91999 -8.45396 -6.48863 0.07026 0.68355 0.78762 1.27542 1.28730 1.36634 1.51052 1.70827 2.13886 2.57091 3.37481 3.88849 3.91257 4.29165 4.30948 4.52183 4.59063 4.62390 4.78044 4.95177 5.00862 5.02656 5.10355 5.17868 5.33688 5.40010 5.43749 5.70796 5.86422 5.87412 6.00346 6.35028 6.57554 6.69701 8.08820 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.045042 B = 0.006061 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.493120 B = 4618.226723 C = 5064.262945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C -0.200 4.200 4 C -0.094 4.094 5 C -0.183 4.183 6 C -0.075 4.075 7 C -0.140 4.140 8 C 0.080 3.920 9 C -0.468 4.468 10 H 0.077 0.923 11 C 0.040 3.960 12 N -0.799 5.799 13 Si 0.991 3.009 14 H -0.261 1.261 15 H -0.253 1.253 16 H -0.259 1.259 17 C -0.074 4.074 18 F -0.169 7.169 19 C -0.128 4.128 20 S 0.027 5.973 21 H 0.082 0.918 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.157 0.843 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 -7.976 2.409 8.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.315 4.315 4 C -0.123 4.123 5 C -0.189 4.189 6 C -0.095 4.095 7 C -0.159 4.159 8 C 0.074 3.926 9 C -0.496 4.496 10 H 0.095 0.905 11 C -0.179 4.179 12 N -0.423 5.423 13 Si 0.810 3.190 14 H -0.186 1.186 15 H -0.177 1.177 16 H -0.183 1.183 17 C -0.101 4.101 18 F -0.149 7.149 19 C -0.244 4.244 20 S 0.289 5.711 21 H 0.101 0.899 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.175 0.825 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.915 -8.211 1.063 8.498 hybrid contribution 0.464 1.393 0.809 1.676 sum -1.451 -6.818 1.872 7.217 Atomic orbital electron populations 1.21773 0.93996 1.02684 1.01694 1.20115 0.96403 0.87713 1.03850 1.24110 1.11803 1.01820 0.93718 1.19857 1.00698 0.91824 0.99954 1.18095 1.13131 0.96835 0.90854 1.20743 0.98212 0.92118 0.98426 1.20842 1.03752 0.96339 0.95006 1.17854 0.90340 0.92489 0.91919 1.19766 1.33156 0.92754 1.03911 0.90509 1.26851 0.94133 1.04017 0.92878 1.69824 1.25369 1.34074 1.12996 0.85059 0.78896 0.75378 0.79646 1.18589 1.17652 1.18327 1.17178 1.19863 0.95626 0.77388 1.91214 1.95520 1.94143 1.33990 1.22549 1.06775 0.96666 0.98396 1.83612 1.72019 1.04744 1.10729 0.89924 0.92765 0.93883 0.88381 0.90619 0.82512 0.84650 0.85327 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.89 71.98 0.71 -2.34 15 2 C -0.04 -0.98 6.39 29.85 0.19 -0.79 15 3 C -0.20 -6.75 5.68 24.54 0.14 -6.61 15 4 C -0.09 -3.42 9.97 21.67 0.22 -3.20 15 5 C -0.18 -8.19 5.89 -21.31 -0.13 -8.32 15 6 C -0.07 -3.33 9.99 22.52 0.22 -3.10 15 7 C -0.14 -7.00 8.57 22.30 0.19 -6.81 15 8 C 0.08 4.40 5.56 -21.30 -0.12 4.28 15 9 C -0.47 -25.24 8.74 23.32 0.20 -25.03 15 10 H 0.08 4.16 7.73 -2.91 -0.02 4.13 15 11 C 0.04 1.91 5.15 85.22 0.44 2.35 15 12 N -0.80 -38.55 10.96 21.81 0.24 -38.31 15 13 Si 0.99 35.97 29.59 68.60 2.03 38.00 15 14 H -0.26 -9.27 7.11 99.48 0.71 -8.56 15 15 H -0.25 -8.34 7.11 99.48 0.71 -7.64 15 16 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 17 C -0.07 -4.05 7.33 23.08 0.17 -3.88 15 18 F -0.17 -9.41 16.70 44.97 0.75 -8.66 15 19 C -0.13 -6.35 6.44 22.97 0.15 -6.20 15 20 S 0.03 1.11 23.26 -56.49 -1.31 -0.20 15 21 H 0.08 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 15 23 H 0.04 1.02 8.14 -2.38 -0.02 1.00 15 24 H 0.10 1.90 8.14 -2.39 -0.02 1.88 15 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 15 26 H 0.16 4.54 8.06 -2.91 -0.02 4.52 15 27 H 0.14 4.95 8.06 -2.91 -0.02 4.93 15 28 H 0.13 6.38 6.18 -2.91 -0.02 6.36 15 29 H 0.30 12.73 8.30 -92.71 -0.77 11.96 15 Total: -1.00 -60.16 270.47 5.26 -54.89 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.17 Total: 13.93 kcal Atomic # 6 Polarization: -62.05 SS G_CDS: 2.39 Total: -59.66 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.24 Total: -38.31 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 0.75 Total: -8.66 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -1.31 Total: -0.20 kcal Total: -60.16 5.26 -54.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320171.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.183 kcal (2) G-P(sol) polarization free energy of solvation -60.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds