Wall clock time and date at job start Mon Mar 30 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47313 * 2 1 4 4 C 1.37423 * 119.82576 * 265.79568 * 3 2 1 5 5 C 1.38833 * 120.24404 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.93667 * 179.97438 * 5 4 3 7 7 C 1.37870 * 120.13289 * 0.02562 * 5 4 3 8 8 C 1.39775 * 120.34971 * 359.97438 * 7 5 4 9 9 S 1.75784 * 130.17917 * 180.02562 * 8 7 5 10 10 C 1.69974 * 93.23744 * 179.97438 * 9 8 7 11 11 C 1.36435 * 111.96545 * 0.02562 * 10 9 8 12 12 C 1.40801 * 123.29816 * 180.26980 * 11 10 9 13 13 H 1.08000 * 119.99652 * 150.14781 * 12 11 10 14 14 C 1.39712 * 119.99829 * 330.14297 * 12 11 10 15 15 N 1.31074 * 120.00022 * 351.12818 * 14 12 11 16 16 Si 1.86797 * 119.99896 * 171.13040 * 14 12 11 17 17 H 1.48501 * 109.47469 * 359.97438 * 16 14 12 18 18 H 1.48509 * 109.47273 * 119.99975 * 16 14 12 19 19 H 1.48500 * 109.47341 * 239.99724 * 16 14 12 20 20 C 1.39387 * 119.64116 * 0.02562 * 8 7 5 21 21 H 1.09000 * 109.47560 * 59.99737 * 1 2 3 22 22 H 1.08999 * 109.47589 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46722 * 299.99857 * 1 2 3 24 24 H 1.09005 * 109.46722 * 240.00143 * 2 1 3 25 25 H 1.09000 * 109.47283 * 120.00737 * 2 1 3 26 26 H 1.08008 * 119.88128 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.82685 * 179.97438 * 7 5 4 28 28 H 1.08000 * 124.01597 * 180.02562 * 10 9 8 29 29 H 0.96998 * 120.00102 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3426 2.0361 -1.1890 5 6 2.8056 3.3449 -1.1991 6 9 3.1093 3.9435 -2.3716 7 6 2.9572 4.0346 -0.0150 8 6 2.6462 3.4236 1.2030 9 16 2.7393 4.0504 2.8427 10 6 2.1735 2.6029 3.5310 11 6 1.9132 1.6553 2.5846 12 6 1.4286 0.3693 2.8911 13 1 0.8039 -0.1552 2.1833 14 6 1.7562 -0.2282 4.1108 15 7 2.6496 0.3264 4.8933 16 14 0.9208 -1.8174 4.6264 17 1 -0.0415 -2.2346 3.5752 18 1 1.9443 -2.8777 4.8102 19 1 0.1951 -1.6033 5.9042 20 6 2.1811 2.1096 1.2162 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.2259 1.4995 -2.1191 27 1 3.3182 5.0524 -0.0287 28 1 2.0364 2.4513 4.5915 29 1 2.8773 -0.0886 5.7399 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396320229.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:40 Heat of formation + Delta-G solvation = -25.677483 kcal Electronic energy + Delta-G solvation = -15770.912750 eV Core-core repulsion = 13084.830091 eV Total energy + Delta-G solvation = -2686.082659 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.37844 -38.86499 -34.85105 -33.59274 -32.13273 -29.08586 -27.80975 -25.95657 -23.29786 -22.51477 -20.61457 -19.68907 -17.12294 -16.79322 -15.89743 -15.54713 -15.09108 -14.81059 -14.43683 -13.52744 -13.45721 -13.11323 -12.67293 -12.42751 -12.26405 -11.70365 -11.47777 -11.39490 -11.13186 -10.97321 -10.63422 -10.50030 -10.22328 -9.93634 -9.78240 -9.38349 -9.15341 -8.44036 -7.40829 -6.74164 -6.65817 -4.35314 1.65211 1.80432 2.69715 2.92831 3.07703 3.11121 3.59653 3.71762 3.96126 4.33353 4.86011 5.17237 5.31348 5.46241 5.70755 5.81301 5.92387 6.00615 6.05574 6.23697 6.42754 6.63092 6.67321 6.72942 6.82300 6.93446 7.15653 7.20302 7.48549 7.68198 7.90619 8.42779 8.74543 8.85375 10.28894 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.008964 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.774856 B = 3122.700791 C = 4089.035318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.005 4.005 4 C -0.180 4.180 5 C 0.090 3.910 6 F -0.151 7.151 7 C -0.137 4.137 8 C -0.122 4.122 9 S 0.053 5.947 10 C -0.344 4.344 11 C 0.088 3.912 12 C -0.448 4.448 13 H 0.094 0.906 14 C 0.070 3.930 15 N -0.804 5.804 16 Si 0.906 3.094 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.274 1.274 20 C -0.068 4.068 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.156 0.844 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 0.546 -5.870 6.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.007 4.007 4 C -0.202 4.202 5 C 0.068 3.932 6 F -0.130 7.130 7 C -0.162 4.162 8 C -0.238 4.238 9 S 0.317 5.683 10 C -0.480 4.480 11 C 0.079 3.921 12 C -0.481 4.481 13 H 0.112 0.888 14 C -0.146 4.146 15 N -0.431 5.431 16 Si 0.731 3.269 17 H -0.184 1.184 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.079 4.079 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.124 0.876 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.174 0.826 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.061 1.859 -4.922 5.367 hybrid contribution -0.512 -1.933 -0.362 2.032 sum -1.573 -0.074 -5.284 5.513 Atomic orbital electron populations 1.21749 0.95048 1.01182 1.02131 1.20817 0.96130 0.92659 1.03684 1.19466 0.95174 0.95684 0.90343 1.20548 1.07276 0.93946 0.98470 1.17208 1.03445 0.92145 0.80373 1.91417 1.91415 1.83908 1.46236 1.20141 1.06278 1.00128 0.89654 1.22417 1.05497 0.98262 0.97627 1.81933 1.72529 1.19554 0.94295 1.24264 1.25114 0.94999 1.03591 1.17253 0.94821 0.93926 0.86110 1.19336 1.27781 0.99505 1.01474 0.88837 1.25794 0.93728 0.99029 0.96073 1.69886 1.24721 1.38453 1.10009 0.86282 0.79907 0.81299 0.79411 1.18393 1.20115 1.19982 1.19697 1.00653 0.92535 0.94982 0.93578 0.92943 0.91214 0.92380 0.87599 0.85696 0.85890 0.82637 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.04 37.16 0.34 -2.01 15 2 C -0.10 -1.71 5.34 -27.88 -0.15 -1.86 15 3 C 0.00 -0.10 5.18 -104.04 -0.54 -0.64 15 4 C -0.18 -3.29 9.61 -39.66 -0.38 -3.67 15 5 C 0.09 1.68 7.29 -39.50 -0.29 1.39 15 6 F -0.15 -2.65 17.26 2.25 0.04 -2.61 15 7 C -0.14 -2.67 10.04 -39.14 -0.39 -3.06 15 8 C -0.12 -2.68 6.44 -38.58 -0.25 -2.93 15 9 S 0.05 1.15 22.96 -107.50 -2.47 -1.32 15 10 C -0.34 -8.67 9.46 30.08 0.28 -8.38 15 11 C 0.09 2.21 5.61 -106.18 -0.60 1.61 15 12 C -0.45 -11.03 7.33 -38.06 -0.28 -11.30 15 13 H 0.09 2.13 3.73 -52.49 -0.20 1.93 15 14 C 0.07 1.69 5.36 -17.32 -0.09 1.60 15 15 N -0.80 -20.54 11.13 55.54 0.62 -19.92 15 16 Si 0.91 18.23 29.57 -169.99 -5.03 13.21 15 17 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 20 C -0.07 -1.57 5.99 -105.20 -0.63 -2.20 15 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.07 1.28 6.92 -51.93 -0.36 0.92 15 24 H 0.06 0.88 8.05 -51.93 -0.42 0.47 15 25 H 0.11 2.10 5.47 -51.93 -0.28 1.82 15 26 H 0.13 1.95 8.06 -52.48 -0.42 1.52 15 27 H 0.12 2.11 8.06 -52.48 -0.42 1.68 15 28 H 0.16 4.15 6.70 -52.49 -0.35 3.80 15 29 H 0.28 6.50 8.30 -40.82 -0.34 6.16 15 LS Contribution 260.50 15.07 3.93 3.93 Total: -1.00 -25.88 260.50 -8.32 -34.20 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -2.43 Total: 3.98 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: -2.98 Total: -31.46 kcal Atomic # 7 Polarization: -20.54 SS G_CDS: 0.62 Total: -19.92 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.47 Total: -1.32 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.88 -8.32 -34.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320229.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.527 kcal (2) G-P(sol) polarization free energy of solvation -25.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds