Wall clock time and date at job start Mon Mar 30 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47313 * 2 1 4 4 C 1.37423 * 119.82576 * 265.79568 * 3 2 1 5 5 C 1.38833 * 120.24404 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.93667 * 179.97438 * 5 4 3 7 7 C 1.37870 * 120.13289 * 0.02562 * 5 4 3 8 8 C 1.39775 * 120.34971 * 359.97438 * 7 5 4 9 9 S 1.75784 * 130.17917 * 180.02562 * 8 7 5 10 10 C 1.69974 * 93.23744 * 179.97438 * 9 8 7 11 11 C 1.36435 * 111.96545 * 0.02562 * 10 9 8 12 12 C 1.40801 * 123.29816 * 180.26980 * 11 10 9 13 13 H 1.08000 * 119.99652 * 150.14781 * 12 11 10 14 14 C 1.39712 * 119.99829 * 330.14297 * 12 11 10 15 15 N 1.31074 * 120.00022 * 351.12818 * 14 12 11 16 16 Si 1.86797 * 119.99896 * 171.13040 * 14 12 11 17 17 H 1.48501 * 109.47469 * 359.97438 * 16 14 12 18 18 H 1.48509 * 109.47273 * 119.99975 * 16 14 12 19 19 H 1.48500 * 109.47341 * 239.99724 * 16 14 12 20 20 C 1.39387 * 119.64116 * 0.02562 * 8 7 5 21 21 H 1.09000 * 109.47560 * 59.99737 * 1 2 3 22 22 H 1.08999 * 109.47589 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46722 * 299.99857 * 1 2 3 24 24 H 1.09005 * 109.46722 * 240.00143 * 2 1 3 25 25 H 1.09000 * 109.47283 * 120.00737 * 2 1 3 26 26 H 1.08008 * 119.88128 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.82685 * 179.97438 * 7 5 4 28 28 H 1.08000 * 124.01597 * 180.02562 * 10 9 8 29 29 H 0.96998 * 120.00102 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3426 2.0361 -1.1890 5 6 2.8056 3.3449 -1.1991 6 9 3.1093 3.9435 -2.3716 7 6 2.9572 4.0346 -0.0150 8 6 2.6462 3.4236 1.2030 9 16 2.7393 4.0504 2.8427 10 6 2.1735 2.6029 3.5310 11 6 1.9132 1.6553 2.5846 12 6 1.4286 0.3693 2.8911 13 1 0.8039 -0.1552 2.1833 14 6 1.7562 -0.2282 4.1108 15 7 2.6496 0.3264 4.8933 16 14 0.9208 -1.8174 4.6264 17 1 -0.0415 -2.2346 3.5752 18 1 1.9443 -2.8777 4.8102 19 1 0.1951 -1.6033 5.9042 20 6 2.1811 2.1096 1.2162 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.2259 1.4995 -2.1191 27 1 3.3182 5.0524 -0.0287 28 1 2.0364 2.4513 4.5915 29 1 2.8773 -0.0886 5.7399 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396320229.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:40 Heat of formation + Delta-G solvation = -37.198586 kcal Electronic energy + Delta-G solvation = -15771.412342 eV Core-core repulsion = 13084.830091 eV Total energy + Delta-G solvation = -2686.582251 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.83443 -40.45848 -36.60444 -35.05170 -33.89851 -30.57996 -29.48672 -27.75157 -24.75579 -24.16480 -22.14528 -21.41314 -18.78968 -18.44743 -17.55814 -17.10063 -16.54919 -16.47001 -16.01751 -15.01964 -14.90010 -14.70747 -14.24746 -14.02197 -13.91162 -13.27483 -13.07512 -12.93824 -12.75463 -12.56594 -12.16368 -12.07935 -11.75115 -11.54144 -11.38697 -11.08698 -10.93056 -10.05912 -9.09352 -8.55113 -8.41299 -6.23524 0.02362 0.25231 1.03198 1.30061 1.41849 1.55233 1.86748 1.92626 2.26090 2.66870 3.34113 3.35787 3.82144 4.04624 4.24378 4.37735 4.40072 4.61851 4.65451 4.82493 5.09067 5.10663 5.17547 5.22236 5.29278 5.30964 5.55569 5.64995 5.69180 6.01551 6.08448 6.57724 6.89883 6.99947 8.48040 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.008964 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.774856 B = 3122.700791 C = 4089.035318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.012 4.012 4 C -0.168 4.168 5 C 0.100 3.900 6 F -0.139 7.139 7 C -0.142 4.142 8 C -0.136 4.136 9 S 0.074 5.926 10 C -0.384 4.384 11 C 0.069 3.931 12 C -0.465 4.465 13 H 0.109 0.891 14 C 0.024 3.976 15 N -0.841 5.841 16 Si 0.975 3.025 17 H -0.246 1.246 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.101 4.101 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.040 0.960 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.162 0.838 27 H 0.145 0.855 28 H 0.129 0.871 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 -0.414 -8.338 8.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 C -0.014 4.014 4 C -0.190 4.190 5 C 0.079 3.921 6 F -0.118 7.118 7 C -0.167 4.167 8 C -0.251 4.251 9 S 0.337 5.663 10 C -0.519 4.519 11 C 0.060 3.940 12 C -0.498 4.498 13 H 0.126 0.874 14 C -0.188 4.188 15 N -0.469 5.469 16 Si 0.797 3.203 17 H -0.169 1.169 18 H -0.197 1.197 19 H -0.201 1.201 20 C -0.111 4.111 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.060 0.940 24 H 0.109 0.891 25 H 0.099 0.901 26 H 0.179 0.821 27 H 0.163 0.837 28 H 0.147 0.853 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.568 0.910 -7.409 7.627 hybrid contribution -0.321 -1.580 0.273 1.635 sum -1.889 -0.670 -7.135 7.412 Atomic orbital electron populations 1.21705 0.93915 1.02434 1.01573 1.20831 0.97055 0.91270 1.04030 1.19766 0.94975 0.96770 0.89839 1.20887 1.05283 0.93750 0.99119 1.17269 1.02196 0.92250 0.80414 1.91455 1.91151 1.83753 1.45438 1.20364 1.06076 1.01250 0.89018 1.22636 1.05963 0.98287 0.98244 1.81519 1.72745 1.17571 0.94414 1.24152 1.27670 0.97398 1.02712 1.17676 0.94427 0.94308 0.87544 1.19754 1.28032 0.99731 1.02269 0.87389 1.26716 0.93927 1.02382 0.95779 1.70005 1.26158 1.40182 1.10541 0.85233 0.78974 0.77043 0.79054 1.16875 1.19679 1.20064 1.19855 1.02503 0.93561 0.95155 0.91802 0.90800 0.94045 0.89085 0.90102 0.82090 0.83703 0.85342 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.04 71.98 0.65 -3.54 15 2 C -0.09 -3.16 5.34 29.85 0.16 -3.00 15 3 C -0.01 -0.45 5.18 -19.49 -0.10 -0.55 15 4 C -0.17 -5.54 9.61 22.22 0.21 -5.33 15 5 C 0.10 3.42 7.29 22.32 0.16 3.59 15 6 F -0.14 -4.34 17.26 44.97 0.78 -3.56 15 7 C -0.14 -5.26 10.04 22.55 0.23 -5.03 15 8 C -0.14 -5.91 6.44 22.92 0.15 -5.77 15 9 S 0.07 3.30 22.96 -56.49 -1.30 2.00 15 10 C -0.38 -20.34 9.46 67.40 0.64 -19.70 15 11 C 0.07 3.62 5.61 -20.88 -0.12 3.50 15 12 C -0.47 -23.41 7.33 23.25 0.17 -23.24 15 13 H 0.11 4.94 3.73 -2.91 -0.01 4.93 15 14 C 0.02 1.20 5.36 85.16 0.46 1.66 15 15 N -0.84 -44.72 11.13 21.80 0.24 -44.48 15 16 Si 0.98 37.56 29.57 68.60 2.03 39.59 15 17 H -0.25 -8.79 7.11 99.48 0.71 -8.09 15 18 H -0.27 -10.21 7.11 99.48 0.71 -9.50 15 19 H -0.28 -10.55 7.11 99.48 0.71 -9.84 15 20 C -0.10 -4.65 5.99 -20.24 -0.12 -4.77 15 21 H 0.06 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.04 1.47 6.92 -2.38 -0.02 1.46 15 24 H 0.09 2.41 8.05 -2.38 -0.02 2.39 15 25 H 0.08 3.13 5.47 -2.39 -0.01 3.12 15 26 H 0.16 4.13 8.06 -2.91 -0.02 4.10 15 27 H 0.15 4.61 8.06 -2.91 -0.02 4.59 15 28 H 0.13 7.37 6.70 -2.91 -0.02 7.35 15 29 H 0.28 13.67 8.30 -92.71 -0.77 12.90 15 Total: -1.00 -57.12 260.50 5.42 -51.70 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 1.19 Total: 16.94 kcal Atomic # 6 Polarization: -64.67 SS G_CDS: 2.49 Total: -62.19 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.24 Total: -44.48 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.30 Total: 2.00 kcal Total: -57.12 5.42 -51.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396320229.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.503 kcal (2) G-P(sol) polarization free energy of solvation -57.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds