Wall clock time and date at job start Mon Mar 30 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47102 * 2 1 4 4 S 1.69975 * 124.02637 * 269.70021 * 3 2 1 5 5 C 1.75785 * 93.23097 * 179.91694 * 4 3 2 6 6 C 1.39861 * 130.18650 * 180.02562 * 5 4 3 7 7 C 1.37619 * 120.42507 * 180.31740 * 6 5 4 8 8 C 1.38625 * 120.21694 * 359.97438 * 7 6 5 9 9 C 1.37686 * 120.23125 * 0.02708 * 8 7 6 10 10 F 1.35101 * 119.86766 * 179.97438 * 9 8 7 11 11 C 1.39314 * 110.17887 * 0.34575 * 5 4 3 12 12 C 1.36451 * 124.02576 * 90.00232 * 3 2 1 13 13 C 1.40806 * 123.30071 * 359.97438 * 12 3 2 14 14 H 1.08001 * 120.00104 * 46.61586 * 13 12 3 15 15 C 1.39700 * 120.00128 * 226.62044 * 13 12 3 16 16 N 1.31080 * 120.00065 * 17.05174 * 15 13 12 17 17 Si 1.86806 * 120.00145 * 197.05940 * 15 13 12 18 18 H 1.48503 * 109.46943 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47196 * 119.99557 * 17 15 13 20 20 H 1.48494 * 109.47054 * 239.99710 * 17 15 13 21 21 H 1.09004 * 109.47679 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47176 * 300.00278 * 1 2 3 23 23 H 1.08997 * 109.47360 * 59.99996 * 1 2 3 24 24 H 1.08998 * 109.46895 * 120.00255 * 2 1 3 25 25 H 1.08997 * 109.47113 * 239.99897 * 2 1 3 26 26 H 1.07997 * 119.78985 * 0.31921 * 6 5 4 27 27 H 1.08005 * 119.88980 * 180.02562 * 7 6 5 28 28 H 1.08005 * 119.88351 * 179.97438 * 8 7 6 29 29 H 0.96997 * 119.99891 * 182.20900 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3563 2.3151 -1.4087 5 6 2.8528 3.7412 -0.5088 6 6 3.2942 4.9876 -0.9645 7 6 3.6427 5.9734 -0.0697 8 6 3.5586 5.7392 1.2940 9 6 3.1265 4.5188 1.7625 10 9 3.0478 4.2983 3.0931 11 6 2.7672 3.4992 0.8605 12 6 2.2869 2.1407 1.1309 13 6 2.1055 1.6291 2.4301 14 1 2.4790 0.6473 2.6809 15 6 1.4424 2.3915 3.3948 16 7 0.7052 3.4124 3.0304 17 14 1.6063 1.9564 5.2041 18 1 2.4876 0.7701 5.3500 19 1 2.1959 3.1049 5.9380 20 1 0.2653 1.6480 5.7624 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 3.3619 5.1777 -2.0255 27 1 3.9821 6.9329 -0.4312 28 1 3.8339 6.5166 1.9915 29 1 0.2707 3.9610 3.7020 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396321013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:40 Heat of formation + Delta-G solvation = -19.048144 kcal Electronic energy + Delta-G solvation = -16148.786858 eV Core-core repulsion = 13462.991668 eV Total energy + Delta-G solvation = -2685.795189 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.70889 -38.28624 -35.42303 -32.82903 -31.61269 -29.55061 -27.91107 -25.80611 -22.92195 -22.26206 -20.74686 -19.27957 -17.19092 -16.48042 -15.44163 -15.17205 -14.89251 -14.44902 -14.30522 -13.92846 -13.26133 -12.73381 -12.53160 -12.18590 -12.15428 -11.62949 -11.45255 -11.33111 -10.98510 -10.80306 -10.59714 -10.35417 -10.04045 -9.97427 -9.71556 -9.41266 -8.84920 -8.15788 -7.40439 -6.76070 -6.40723 -4.32672 1.77018 1.93901 2.70289 3.04018 3.18021 3.21386 3.52808 3.62141 4.10404 4.47667 5.12983 5.24836 5.49308 5.62521 5.84763 6.00010 6.08062 6.23068 6.38385 6.44895 6.60982 6.80521 6.82483 6.87822 7.00193 7.05216 7.17327 7.20602 7.35869 7.77854 7.94472 8.37754 8.69705 8.97467 10.37540 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.013791 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.193368 B = 2029.851999 C = 3362.470699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C -0.358 4.358 4 S 0.056 5.944 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.096 4.096 8 C -0.196 4.196 9 C 0.176 3.824 10 F -0.124 7.124 11 C -0.078 4.078 12 C 0.135 3.865 13 C -0.470 4.470 14 H 0.081 0.919 15 C 0.096 3.904 16 N -0.805 5.805 17 Si 0.898 3.102 18 H -0.263 1.263 19 H -0.272 1.272 20 H -0.278 1.278 21 H 0.036 0.964 22 H 0.062 0.938 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 1.771 -3.647 4.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 C -0.474 4.474 4 S 0.321 5.679 5 C -0.235 4.235 6 C -0.142 4.142 7 C -0.116 4.116 8 C -0.218 4.218 9 C 0.155 3.845 10 F -0.102 7.102 11 C -0.088 4.088 12 C 0.126 3.874 13 C -0.503 4.503 14 H 0.099 0.901 15 C -0.121 4.121 16 N -0.432 5.432 17 Si 0.723 3.277 18 H -0.187 1.187 19 H -0.197 1.197 20 H -0.204 1.204 21 H 0.055 0.945 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.368 1.454 -5.020 5.738 hybrid contribution 0.025 0.337 2.724 2.745 sum 2.393 1.792 -2.296 3.769 Atomic orbital electron populations 1.21692 0.96634 0.99188 1.02042 1.19391 0.94456 0.91063 0.99744 1.22930 1.26494 1.03617 0.94389 1.81735 1.72428 1.03128 1.10622 1.22470 1.05634 0.98702 0.96660 1.20292 1.03264 0.91738 0.98913 1.20483 1.00792 0.98335 0.92021 1.20701 1.08348 0.96211 0.96565 1.17423 0.97077 0.92756 0.77240 1.91442 1.93070 1.94952 1.30764 1.19619 1.01530 0.96630 0.91064 1.17088 0.89941 0.86780 0.93603 1.18731 1.34567 1.03373 0.93612 0.90088 1.25575 0.92416 0.93684 1.00382 1.69874 1.22315 1.15043 1.35988 0.86437 0.78596 0.79504 0.83163 1.18689 1.19714 1.20412 0.94541 0.91909 0.93909 0.91671 0.94306 0.86627 0.86008 0.85965 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.89 37.16 0.37 -2.34 15 2 C -0.01 -0.15 6.02 -27.88 -0.17 -0.31 15 3 C -0.36 -8.50 5.56 -34.95 -0.19 -8.70 15 4 S 0.06 1.19 22.89 -107.50 -2.46 -1.27 15 5 C -0.12 -2.66 6.44 -38.57 -0.25 -2.91 15 6 C -0.12 -2.22 10.06 -39.20 -0.39 -2.62 15 7 C -0.10 -1.67 10.02 -39.66 -0.40 -2.06 15 8 C -0.20 -3.84 9.99 -39.64 -0.40 -4.24 15 9 C 0.18 4.18 6.73 -38.82 -0.26 3.92 15 10 F -0.12 -3.10 13.18 2.25 0.03 -3.07 15 11 C -0.08 -1.95 5.57 -105.16 -0.59 -2.53 15 12 C 0.14 3.53 5.24 -106.19 -0.56 2.97 15 13 C -0.47 -12.46 8.07 -38.07 -0.31 -12.77 15 14 H 0.08 2.11 7.45 -52.49 -0.39 1.72 15 15 C 0.10 2.48 3.22 -17.33 -0.06 2.43 15 16 N -0.81 -21.52 11.18 55.54 0.62 -20.90 15 17 Si 0.90 19.85 29.47 -169.99 -5.01 14.84 15 18 H -0.26 -5.72 7.11 56.52 0.40 -5.32 15 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.06 1.38 8.14 -51.93 -0.42 0.96 15 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.06 1.38 7.25 -51.93 -0.38 1.01 15 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.12 1.82 8.06 -52.49 -0.42 1.39 15 27 H 0.12 1.63 8.06 -52.48 -0.42 1.21 15 28 H 0.12 2.06 8.06 -52.48 -0.42 1.64 15 29 H 0.28 6.94 8.30 -40.82 -0.34 6.60 15 LS Contribution 264.59 15.07 3.99 3.99 Total: -1.00 -27.82 264.59 -8.89 -36.71 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -2.86 Total: -1.14 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -3.20 Total: -29.16 kcal Atomic # 7 Polarization: -21.52 SS G_CDS: 0.62 Total: -20.90 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.03 Total: -3.07 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.01 Total: 14.84 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.46 Total: -1.27 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.82 -8.89 -36.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.658 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds