Wall clock time and date at job start Mon Mar 30 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38902 * 119.75970 * 265.00334 * 3 2 1 5 5 C 1.37689 * 120.27322 * 179.97438 * 4 3 2 6 6 C 1.39605 * 120.49436 * 0.02562 * 5 4 3 7 7 S 1.76012 * 130.19047 * 179.97438 * 6 5 4 8 8 C 1.75462 * 91.78324 * 180.02562 * 7 6 5 9 9 C 1.39904 * 124.83108 * 180.02562 * 8 7 6 10 10 H 1.08008 * 120.00240 * 180.02562 * 9 8 7 11 11 C 1.40154 * 120.00384 * 0.02562 * 9 8 7 12 12 N 1.30785 * 119.99777 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00101 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46984 * 60.00181 * 13 11 9 15 15 H 1.48501 * 109.47000 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47016 * 300.00152 * 13 11 9 17 17 C 1.36968 * 110.33456 * 359.97438 * 8 7 6 18 18 C 1.39742 * 115.02298 * 0.02562 * 17 8 7 19 19 C 1.37176 * 119.76483 * 84.72592 * 3 2 1 20 20 F 1.35100 * 119.84758 * 0.02562 * 19 3 2 21 21 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 26 26 H 1.07994 * 119.86362 * 359.97112 * 4 3 2 27 27 H 1.07996 * 119.75477 * 179.97438 * 5 4 3 28 28 H 0.96994 * 119.99776 * 179.97438 * 12 11 9 29 29 H 1.07996 * 122.48688 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0359 -1.2012 5 6 2.8205 3.3338 -1.2136 6 6 2.9620 4.0466 -0.0216 7 16 3.5180 5.6930 0.2582 8 6 3.3005 5.5302 1.9917 9 6 3.5684 6.5342 2.9284 10 1 3.4064 6.3489 3.9801 11 6 4.0471 7.7807 2.5023 12 7 4.2429 8.0054 1.2288 13 14 4.4054 9.1210 3.7531 14 1 5.4411 8.6454 4.7052 15 1 4.8969 10.3341 3.0517 16 1 3.1627 9.4491 4.4968 17 6 2.8301 4.2806 2.2971 18 6 2.6338 3.4383 1.1995 19 6 2.1561 2.0994 1.1857 20 9 1.8278 1.4906 2.3463 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.2560 1.4938 -2.1294 27 1 3.0741 3.8037 -2.1523 28 1 4.5738 8.8681 0.9339 29 1 2.6268 3.9691 3.3110 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396321643.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:08 Heat of formation + Delta-G solvation = -59.283787 kcal Electronic energy + Delta-G solvation = -15335.314903 eV Core-core repulsion = 12647.774966 eV Total energy + Delta-G solvation = -2687.539938 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.57646 -39.85839 -37.08616 -35.72950 -33.67343 -30.83177 -29.99702 -27.29159 -25.04928 -23.51214 -22.53240 -20.68847 -19.89577 -18.41231 -17.42082 -16.87420 -16.52042 -16.40463 -15.70736 -15.15433 -14.87628 -14.69949 -14.20471 -13.95225 -13.86533 -13.42136 -13.34003 -13.12944 -12.99456 -12.41567 -12.27080 -12.04591 -11.89081 -11.72955 -11.62408 -11.05341 -11.04094 -9.98622 -9.29191 -8.98648 -8.25169 -6.63774 0.17607 0.46930 1.28101 1.32186 1.35664 1.50364 1.79560 1.79909 2.10681 2.74286 3.07704 3.66860 3.87712 4.04651 4.38226 4.47419 4.52030 4.70938 4.73745 4.83967 4.97258 5.07139 5.09826 5.21408 5.36944 5.38670 5.48941 5.65753 5.67392 5.75473 5.98962 6.22479 6.38610 6.47832 7.88909 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.044749 B = 0.006104 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.555207 B = 4585.792189 C = 5109.527529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C -0.097 4.097 4 C -0.157 4.157 5 C -0.063 4.063 6 C -0.273 4.273 7 S 0.146 5.854 8 C 0.027 3.973 9 C -0.409 4.409 10 H 0.100 0.900 11 C 0.019 3.981 12 N -0.793 5.793 13 Si 1.015 2.985 14 H -0.255 1.255 15 H -0.254 1.254 16 H -0.256 1.256 17 C -0.399 4.399 18 C -0.032 4.032 19 C 0.018 3.982 20 F -0.161 7.161 21 H 0.061 0.939 22 H 0.081 0.919 23 H 0.031 0.969 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.160 0.840 27 H 0.136 0.864 28 H 0.316 0.684 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -3.714 -4.151 5.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.100 4.100 4 C -0.177 4.177 5 C -0.085 4.085 6 C -0.387 4.387 7 S 0.406 5.594 8 C -0.092 4.092 9 C -0.443 4.443 10 H 0.118 0.882 11 C -0.201 4.201 12 N -0.419 5.419 13 Si 0.832 3.168 14 H -0.179 1.179 15 H -0.178 1.178 16 H -0.180 1.180 17 C -0.424 4.424 18 C -0.041 4.041 19 C -0.002 4.002 20 F -0.140 7.140 21 H 0.081 0.919 22 H 0.100 0.900 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.177 0.823 27 H 0.154 0.846 28 H 0.130 0.870 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.906 -2.415 -5.185 5.791 hybrid contribution -0.395 -0.647 2.041 2.177 sum -1.301 -3.061 -3.144 4.577 Atomic orbital electron populations 1.21693 0.93985 1.02644 1.01420 1.20484 0.96871 0.90434 1.03515 1.19809 1.01191 0.97797 0.91173 1.20743 1.05139 0.94676 0.97131 1.20639 0.98175 0.94405 0.95269 1.23817 1.14479 1.04079 0.96368 1.84423 1.69554 1.03861 1.01608 1.21734 0.95015 0.95579 0.96863 1.19685 1.33336 0.95579 0.95663 0.88182 1.27314 0.91895 1.02030 0.98843 1.68610 1.29327 1.26813 1.17150 0.84708 0.80042 0.74939 0.77072 1.17937 1.17755 1.17951 1.19561 1.29516 0.96429 0.96886 1.18210 0.98784 0.93010 0.94064 1.17769 1.09594 0.91199 0.81676 1.91288 1.91159 1.82961 1.48608 0.91942 0.89973 0.94975 0.92047 0.88093 0.82256 0.84570 0.86981 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.89 71.98 0.71 -2.87 15 2 C -0.08 -2.17 5.80 29.85 0.17 -1.99 15 3 C -0.10 -3.66 5.12 -19.95 -0.10 -3.76 15 4 C -0.16 -5.43 9.66 22.30 0.22 -5.22 15 5 C -0.06 -2.48 10.05 22.47 0.23 -2.25 15 6 C -0.27 -13.29 6.47 23.10 0.15 -13.14 15 7 S 0.15 7.30 20.13 -56.49 -1.14 6.17 15 8 C 0.03 1.52 6.11 22.38 0.14 1.65 15 9 C -0.41 -21.07 9.26 23.14 0.21 -20.86 15 10 H 0.10 4.93 7.85 -2.91 -0.02 4.90 15 11 C 0.02 0.85 5.50 85.31 0.47 1.32 15 12 N -0.79 -36.45 10.58 21.87 0.23 -36.22 15 13 Si 1.01 33.52 29.56 68.60 2.03 35.55 15 14 H -0.26 -8.28 7.11 99.48 0.71 -7.58 15 15 H -0.25 -7.63 7.11 99.48 0.71 -6.92 15 16 H -0.26 -8.29 7.11 99.48 0.71 -7.58 15 17 C -0.40 -22.50 10.06 22.34 0.22 -22.28 15 18 C -0.03 -1.70 5.86 -21.44 -0.13 -1.83 15 19 C 0.02 0.86 7.32 23.00 0.17 1.02 15 20 F -0.16 -7.60 16.41 44.97 0.74 -6.86 15 21 H 0.06 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.08 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.03 0.95 8.14 -2.39 -0.02 0.93 15 24 H 0.06 1.82 7.75 -2.39 -0.02 1.80 15 25 H 0.10 2.24 8.05 -2.39 -0.02 2.22 15 26 H 0.16 4.05 8.06 -2.91 -0.02 4.03 15 27 H 0.14 4.54 8.06 -2.91 -0.02 4.51 15 28 H 0.32 12.67 8.29 -92.71 -0.77 11.90 15 29 H 0.09 5.20 8.06 -2.91 -0.02 5.17 15 Total: -1.00 -60.59 269.66 5.48 -55.11 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.16 Total: 16.46 kcal Atomic # 6 Polarization: -72.67 SS G_CDS: 2.46 Total: -70.20 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.23 Total: -36.22 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.74 Total: -6.86 kcal Atomic # 14 Polarization: 33.52 SS G_CDS: 2.03 Total: 35.55 kcal Atomic # 16 Polarization: 7.30 SS G_CDS: -1.14 Total: 6.17 kcal Total: -60.59 5.48 -55.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321643.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.175 kcal (2) G-P(sol) polarization free energy of solvation -60.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds