Wall clock time and date at job start Mon Mar 30 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47680 * 2 1 4 4 C 1.37921 * 120.05601 * 265.02481 * 3 2 1 5 5 C 1.37772 * 120.76341 * 179.97438 * 4 3 2 6 6 C 1.41365 * 120.90303 * 0.02627 * 5 4 3 7 7 C 1.45557 * 129.17159 * 179.97438 * 6 5 4 8 8 F 1.35102 * 122.57396 * 359.97438 * 7 6 5 9 9 C 1.31970 * 114.84357 * 179.13902 * 7 6 5 10 10 S 1.75296 * 111.33896 * 0.78520 * 9 7 6 11 11 C 1.39419 * 118.99641 * 359.69387 * 6 5 4 12 12 C 1.40390 * 120.06027 * 85.00115 * 3 2 1 13 13 C 1.40921 * 120.11243 * 0.02562 * 12 3 2 14 14 H 1.08004 * 120.00003 * 323.41338 * 13 12 3 15 15 C 1.39905 * 120.00067 * 143.41461 * 13 12 3 16 16 N 1.30882 * 119.99664 * 332.33793 * 15 13 12 17 17 Si 1.86801 * 120.00023 * 152.33402 * 15 13 12 18 18 H 1.48502 * 109.46800 * 180.02562 * 17 15 13 19 19 H 1.48496 * 109.47110 * 300.00100 * 17 15 13 20 20 H 1.48494 * 109.47038 * 60.00237 * 17 15 13 21 21 H 1.09001 * 109.46552 * 300.00240 * 1 2 3 22 22 H 1.08998 * 109.47384 * 59.99684 * 1 2 3 23 23 H 1.09000 * 109.47342 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47042 * 239.99632 * 2 1 3 25 25 H 1.08998 * 109.47384 * 120.00316 * 2 1 3 26 26 H 1.07993 * 119.62234 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.54911 * 179.97438 * 5 4 3 28 28 H 1.07996 * 124.32676 * 180.15779 * 9 7 6 29 29 H 0.96994 * 120.00001 * 357.59867 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3603 2.0374 -1.1893 5 6 2.8206 3.3359 -1.2063 6 6 2.9692 4.0693 -0.0069 7 6 3.4346 5.4352 0.1839 8 9 3.8099 6.2261 -0.8450 9 6 3.4454 5.8472 1.4376 10 16 2.9025 4.5867 2.5281 11 6 2.6361 3.4613 1.2027 12 6 2.1671 2.1190 1.2105 13 6 1.8334 1.4935 2.4284 14 1 0.9955 0.8136 2.4745 15 6 2.5876 1.7533 3.5778 16 7 3.8464 2.0956 3.4710 17 14 1.7981 1.6116 5.2648 18 1 2.8019 1.9361 6.3099 19 1 0.6603 2.5610 5.3601 20 1 1.3043 0.2255 5.4653 21 1 -0.3632 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.2552 1.4963 -2.1179 27 1 3.0720 3.7996 -2.1487 28 1 3.7590 6.8315 1.7525 29 1 4.2657 2.1354 2.5972 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396321669.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:24 Heat of formation + Delta-G solvation = -33.531578 kcal Electronic energy + Delta-G solvation = -15895.689222 eV Core-core repulsion = 13209.265983 eV Total energy + Delta-G solvation = -2686.423238 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.16321 -38.38313 -35.03707 -33.86679 -31.75898 -29.52999 -27.65876 -25.31010 -23.30263 -21.71794 -20.82583 -19.44598 -18.24991 -16.41555 -15.63778 -15.22291 -14.97971 -14.62979 -14.10591 -13.98097 -13.35816 -12.83305 -12.75007 -12.35059 -12.28425 -11.78688 -11.52171 -11.32163 -11.08581 -10.86057 -10.48093 -10.30875 -10.15220 -9.88078 -9.80578 -9.51661 -8.89625 -8.37750 -7.56771 -7.36229 -6.49339 -4.63376 1.63928 2.50469 2.54660 2.98562 3.09721 3.12254 3.25084 3.30354 3.92692 4.38945 4.96565 5.08584 5.50343 5.76327 5.82696 6.00199 6.16722 6.24415 6.26100 6.42846 6.45569 6.63309 6.72724 6.89515 7.00646 7.12451 7.28128 7.46722 7.61772 7.72114 7.88633 8.01709 8.49820 8.62872 9.88283 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.012477 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.640412 B = 2243.560062 C = 3559.895045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.177 4.177 4 C -0.072 4.072 5 C -0.203 4.203 6 C -0.068 4.068 7 C 0.080 3.920 8 F -0.143 7.143 9 C -0.277 4.277 10 S 0.145 5.855 11 C -0.199 4.199 12 C 0.132 3.868 13 C -0.521 4.521 14 H 0.088 0.912 15 C 0.030 3.970 16 N -0.766 5.766 17 Si 1.053 2.947 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.274 1.274 21 H 0.057 0.943 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.158 0.842 29 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 0.458 -0.943 2.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 C -0.182 4.182 4 C -0.091 4.091 5 C -0.224 4.224 6 C -0.076 4.076 7 C 0.046 3.954 8 F -0.122 7.122 9 C -0.413 4.413 10 S 0.410 5.590 11 C -0.315 4.315 12 C 0.126 3.874 13 C -0.548 4.548 14 H 0.106 0.894 15 C -0.193 4.193 16 N -0.388 5.388 17 Si 0.876 3.124 18 H -0.195 1.195 19 H -0.196 1.196 20 H -0.199 1.199 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.176 0.824 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.234 0.681 2.249 3.243 hybrid contribution 0.105 0.299 -3.535 3.549 sum -2.129 0.980 -1.286 2.674 Atomic orbital electron populations 1.21726 0.96652 0.99837 1.01683 1.20088 0.94618 0.93744 1.00861 1.19625 1.10474 0.95636 0.92472 1.20296 0.98428 0.93921 0.96467 1.20101 1.12339 0.95592 0.94416 1.18715 1.02890 0.90970 0.94980 1.17517 1.04862 0.89253 0.83790 1.91386 1.89526 1.72946 1.58319 1.25212 1.12542 1.06156 0.97375 1.84160 1.68509 0.99738 1.06558 1.22517 1.16299 0.98775 0.93908 1.16759 0.89766 0.87571 0.93324 1.20407 1.15370 1.25711 0.93327 0.89429 1.26963 0.94265 0.92599 1.05501 1.70505 1.10137 1.26945 1.31199 0.83754 0.76692 0.78170 0.73750 1.19455 1.19560 1.19931 0.92372 0.93706 0.94012 0.93520 0.91299 0.88312 0.88433 0.82429 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.81 37.16 0.36 -2.07 15 2 C -0.06 -1.07 5.43 -27.89 -0.15 -1.22 15 3 C -0.18 -3.98 5.19 -103.93 -0.54 -4.52 15 4 C -0.07 -1.53 9.60 -39.87 -0.38 -1.92 15 5 C -0.20 -4.54 10.10 -38.56 -0.39 -4.93 15 6 C -0.07 -1.62 6.04 -105.35 -0.64 -2.26 15 7 C 0.08 1.77 7.57 -38.58 -0.29 1.47 15 8 F -0.14 -2.99 17.32 2.25 0.04 -2.95 15 9 C -0.28 -5.70 11.02 28.82 0.32 -5.38 15 10 S 0.15 3.25 19.89 -107.50 -2.14 1.11 15 11 C -0.20 -4.89 5.29 -37.63 -0.20 -5.09 15 12 C 0.13 3.25 5.00 -106.56 -0.53 2.72 15 13 C -0.52 -12.63 7.66 -37.94 -0.29 -12.92 15 14 H 0.09 2.06 6.41 -52.48 -0.34 1.73 15 15 C 0.03 0.72 3.99 -17.33 -0.07 0.65 15 16 N -0.77 -19.08 11.61 55.55 0.64 -18.44 15 17 Si 1.05 20.63 30.01 -169.99 -5.10 15.53 15 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 20 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 21 H 0.06 1.07 7.11 -51.93 -0.37 0.70 15 22 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 24 H 0.05 0.81 8.05 -51.93 -0.42 0.39 15 25 H 0.07 1.39 7.21 -51.93 -0.37 1.02 15 26 H 0.10 1.83 8.06 -52.49 -0.42 1.40 15 27 H 0.10 2.00 8.06 -52.49 -0.42 1.58 15 28 H 0.16 2.71 8.06 -52.49 -0.42 2.29 15 29 H 0.30 7.80 7.11 -40.82 -0.29 7.51 15 LS Contribution 263.21 15.07 3.97 3.97 Total: -1.00 -25.35 263.21 -8.09 -33.44 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -2.70 Total: 2.84 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: -2.80 Total: -35.49 kcal Atomic # 7 Polarization: -19.08 SS G_CDS: 0.64 Total: -18.44 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.10 Total: 15.53 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -2.14 Total: 1.11 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -25.35 -8.09 -33.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321669.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.091 kcal (2) G-P(sol) polarization free energy of solvation -25.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds