Wall clock time and date at job start Mon Mar 30 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47680 * 2 1 4 4 C 1.37921 * 120.05601 * 265.02481 * 3 2 1 5 5 C 1.37772 * 120.76341 * 179.97438 * 4 3 2 6 6 C 1.41365 * 120.90303 * 0.02627 * 5 4 3 7 7 C 1.45557 * 129.17159 * 179.97438 * 6 5 4 8 8 F 1.35102 * 122.57396 * 359.97438 * 7 6 5 9 9 C 1.31970 * 114.84357 * 179.13902 * 7 6 5 10 10 S 1.75296 * 111.33896 * 0.78520 * 9 7 6 11 11 C 1.39419 * 118.99641 * 359.69387 * 6 5 4 12 12 C 1.40390 * 120.06027 * 85.00115 * 3 2 1 13 13 C 1.40921 * 120.11243 * 0.02562 * 12 3 2 14 14 H 1.08004 * 120.00003 * 323.41338 * 13 12 3 15 15 C 1.39905 * 120.00067 * 143.41461 * 13 12 3 16 16 N 1.30882 * 119.99664 * 332.33793 * 15 13 12 17 17 Si 1.86801 * 120.00023 * 152.33402 * 15 13 12 18 18 H 1.48502 * 109.46800 * 180.02562 * 17 15 13 19 19 H 1.48496 * 109.47110 * 300.00100 * 17 15 13 20 20 H 1.48494 * 109.47038 * 60.00237 * 17 15 13 21 21 H 1.09001 * 109.46552 * 300.00240 * 1 2 3 22 22 H 1.08998 * 109.47384 * 59.99684 * 1 2 3 23 23 H 1.09000 * 109.47342 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47042 * 239.99632 * 2 1 3 25 25 H 1.08998 * 109.47384 * 120.00316 * 2 1 3 26 26 H 1.07993 * 119.62234 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.54911 * 179.97438 * 5 4 3 28 28 H 1.07996 * 124.32676 * 180.15779 * 9 7 6 29 29 H 0.96994 * 120.00001 * 357.59867 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3603 2.0374 -1.1893 5 6 2.8206 3.3359 -1.2063 6 6 2.9692 4.0693 -0.0069 7 6 3.4346 5.4352 0.1839 8 9 3.8099 6.2261 -0.8450 9 6 3.4454 5.8472 1.4376 10 16 2.9025 4.5867 2.5281 11 6 2.6361 3.4613 1.2027 12 6 2.1671 2.1190 1.2105 13 6 1.8334 1.4935 2.4284 14 1 0.9955 0.8136 2.4745 15 6 2.5876 1.7533 3.5778 16 7 3.8464 2.0956 3.4710 17 14 1.7981 1.6116 5.2648 18 1 2.8019 1.9361 6.3099 19 1 0.6603 2.5610 5.3601 20 1 1.3043 0.2255 5.4653 21 1 -0.3632 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.2552 1.4963 -2.1179 27 1 3.0720 3.7996 -2.1487 28 1 3.7590 6.8315 1.7525 29 1 4.2657 2.1354 2.5972 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396321669.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:23 Heat of formation + Delta-G solvation = -44.078901 kcal Electronic energy + Delta-G solvation = -15896.146588 eV Core-core repulsion = 13209.265983 eV Total energy + Delta-G solvation = -2686.880604 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.83754 -40.11263 -36.73923 -35.59248 -33.35520 -31.29129 -29.30503 -27.09406 -24.91082 -23.45226 -22.46976 -21.15385 -19.99759 -18.15769 -17.33334 -16.91577 -16.66819 -16.31147 -15.70876 -15.61946 -15.04034 -14.48153 -14.36309 -13.98684 -13.91867 -13.45431 -13.19286 -12.89022 -12.65364 -12.49208 -12.03221 -11.91038 -11.71103 -11.55369 -11.47985 -11.20321 -10.65659 -10.15277 -9.35923 -9.14436 -8.25769 -6.47108 -0.08329 0.73597 0.83800 1.29765 1.35969 1.51754 1.64514 1.78011 2.31731 2.63249 3.24437 3.32463 3.89856 4.19953 4.29384 4.42719 4.56858 4.59573 4.72478 4.87932 4.89468 5.11272 5.13347 5.28260 5.39353 5.50372 5.52019 5.70295 5.79882 5.95329 6.09511 6.26014 6.70613 6.84480 8.01255 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.012477 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.640412 B = 2243.560062 C = 3559.895045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C -0.185 4.185 4 C -0.076 4.076 5 C -0.208 4.208 6 C -0.093 4.093 7 C 0.063 3.937 8 F -0.137 7.137 9 C -0.259 4.259 10 S 0.136 5.864 11 C -0.227 4.227 12 C 0.105 3.895 13 C -0.540 4.540 14 H 0.087 0.913 15 C 0.004 3.996 16 N -0.784 5.784 17 Si 1.090 2.910 18 H -0.270 1.270 19 H -0.263 1.263 20 H -0.256 1.256 21 H 0.038 0.962 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.132 0.868 27 H 0.115 0.885 28 H 0.193 0.807 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.083 0.314 -1.349 3.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C -0.190 4.190 4 C -0.095 4.095 5 C -0.229 4.229 6 C -0.100 4.100 7 C 0.030 3.970 8 F -0.116 7.116 9 C -0.394 4.394 10 S 0.401 5.599 11 C -0.343 4.343 12 C 0.099 3.901 13 C -0.568 4.568 14 H 0.105 0.895 15 C -0.215 4.215 16 N -0.407 5.407 17 Si 0.908 3.092 18 H -0.194 1.194 19 H -0.187 1.187 20 H -0.180 1.180 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.133 0.867 28 H 0.211 0.789 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.861 0.529 1.820 3.432 hybrid contribution 0.303 0.356 -3.549 3.580 sum -2.558 0.885 -1.730 3.212 Atomic orbital electron populations 1.21647 0.94942 1.01515 1.01038 1.20127 0.96032 0.91822 1.01198 1.20128 1.09441 0.97105 0.92293 1.20657 0.97521 0.93817 0.97496 1.20484 1.11559 0.96096 0.94785 1.19108 1.03457 0.92082 0.95365 1.17511 1.05979 0.89037 0.84500 1.91393 1.89547 1.72591 1.58070 1.25500 1.10726 1.06868 0.96324 1.84053 1.68845 1.00114 1.06890 1.22788 1.17222 0.99359 0.94901 1.17152 0.90465 0.88080 0.94414 1.20509 1.15799 1.26519 0.93962 0.89523 1.28029 0.93898 0.91384 1.08185 1.70621 1.10916 1.29362 1.29753 0.83319 0.76205 0.79321 0.70368 1.19431 1.18740 1.17971 0.94303 0.93004 0.91181 0.91211 0.92841 0.85012 0.86710 0.78936 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.81 71.98 0.71 -3.65 15 2 C -0.05 -2.02 5.43 29.85 0.16 -1.86 15 3 C -0.18 -8.20 5.19 -19.42 -0.10 -8.30 15 4 C -0.08 -3.12 9.60 22.08 0.21 -2.91 15 5 C -0.21 -9.08 10.10 22.93 0.23 -8.85 15 6 C -0.09 -4.39 6.04 -20.34 -0.12 -4.51 15 7 C 0.06 2.74 7.57 23.27 0.18 2.92 15 8 F -0.14 -5.54 17.32 44.97 0.78 -4.77 15 9 C -0.26 -10.29 11.02 66.93 0.74 -9.55 15 10 S 0.14 6.08 19.89 -56.49 -1.12 4.96 15 11 C -0.23 -11.24 5.29 23.54 0.12 -11.12 15 12 C 0.10 5.22 5.00 -21.12 -0.11 5.11 15 13 C -0.54 -26.53 7.66 23.33 0.18 -26.35 15 14 H 0.09 4.14 6.41 -2.91 -0.02 4.12 15 15 C 0.00 0.18 3.99 85.24 0.34 0.52 15 16 N -0.78 -39.77 11.61 21.82 0.25 -39.51 15 17 Si 1.09 41.13 30.01 68.60 2.06 43.19 15 18 H -0.27 -10.10 7.11 99.48 0.71 -9.39 15 19 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 20 H -0.26 -8.81 7.11 99.48 0.71 -8.11 15 21 H 0.04 1.39 7.11 -2.39 -0.02 1.38 15 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 24 H 0.07 2.24 8.05 -2.38 -0.02 2.22 15 25 H 0.05 2.14 7.21 -2.39 -0.02 2.12 15 26 H 0.13 4.47 8.06 -2.91 -0.02 4.45 15 27 H 0.11 4.51 8.06 -2.91 -0.02 4.48 15 28 H 0.19 6.11 8.06 -2.91 -0.02 6.08 15 29 H 0.28 15.09 7.11 -92.71 -0.66 14.43 15 Total: -1.00 -54.07 263.21 5.79 -48.28 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.28 Total: 16.40 kcal Atomic # 6 Polarization: -71.09 SS G_CDS: 2.54 Total: -68.56 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.25 Total: -39.51 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.78 Total: -4.77 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.06 Total: 43.19 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.12 Total: 4.96 kcal Total: -54.07 5.79 -48.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321669.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.200 kcal (2) G-P(sol) polarization free energy of solvation -54.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds