Wall clock time and date at job start Mon Mar 30 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46747 * 2 1 4 4 C 1.38181 * 119.45142 * 90.00102 * 3 2 1 5 5 C 1.39575 * 121.45097 * 180.02562 * 4 3 2 6 6 S 1.76069 * 130.59915 * 180.34897 * 5 4 3 7 7 C 1.75505 * 91.53493 * 180.02562 * 6 5 4 8 8 C 1.32896 * 110.67723 * 359.65606 * 7 6 5 9 9 F 1.35103 * 122.12635 * 180.24481 * 8 7 6 10 10 C 1.39804 * 120.06189 * 359.97438 * 5 4 3 11 11 C 1.47832 * 118.07091 * 0.02562 * 10 5 4 12 12 C 1.40553 * 120.40785 * 180.02562 * 11 10 5 13 13 H 1.07998 * 120.00519 * 333.63176 * 12 11 10 14 14 C 1.39971 * 119.99561 * 153.63046 * 12 11 10 15 15 N 1.30849 * 120.00610 * 343.51183 * 14 12 11 16 16 Si 1.86810 * 119.99759 * 163.51154 * 14 12 11 17 17 H 1.48501 * 109.46860 * 359.97438 * 16 14 12 18 18 H 1.48490 * 109.47009 * 120.00223 * 16 14 12 19 19 H 1.48502 * 109.46913 * 240.00090 * 16 14 12 20 20 C 1.37587 * 119.45123 * 270.01912 * 3 2 1 21 21 H 1.08999 * 109.47107 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47246 * 300.00094 * 1 2 3 23 23 H 1.09002 * 109.47413 * 59.99679 * 1 2 3 24 24 H 1.08998 * 109.47465 * 240.00319 * 2 1 3 25 25 H 1.08998 * 109.47083 * 119.99658 * 2 1 3 26 26 H 1.08003 * 119.27510 * 0.04374 * 4 3 2 27 27 H 1.08003 * 124.66240 * 179.91534 * 7 6 5 28 28 H 0.97000 * 120.00617 * 180.02562 * 15 14 12 29 29 H 1.07989 * 119.93479 * 359.95900 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2587 2.0615 1.2032 5 6 2.7231 3.3768 1.2519 6 16 3.0967 4.4098 2.6279 7 6 3.5556 5.7329 1.5702 8 6 3.4301 5.3796 0.2952 9 9 3.7274 6.2238 -0.7169 10 6 2.9704 4.0765 0.0671 11 6 2.7250 3.3824 -1.2148 12 6 2.9577 4.0393 -2.4354 13 1 2.8983 5.1163 -2.4890 14 6 3.2666 3.2975 -3.5815 15 7 3.6546 2.0528 -3.4705 16 14 3.1248 4.0846 -5.2698 17 1 2.6685 5.4902 -5.1238 18 1 4.4497 4.0606 -5.9399 19 1 2.1427 3.3282 -6.0876 20 6 2.2573 2.0588 -1.1981 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0725 1.5326 2.1263 27 1 3.8974 6.6999 1.9088 28 1 3.8690 1.5389 -4.2648 29 1 2.0744 1.5402 -2.1274 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396321802.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:16 Heat of formation + Delta-G solvation = -39.298575 kcal Electronic energy + Delta-G solvation = -15689.282094 eV Core-core repulsion = 13002.608780 eV Total energy + Delta-G solvation = -2686.673314 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.70103 -39.86415 -36.46679 -36.08288 -33.06572 -31.55780 -29.28766 -27.26181 -24.95835 -23.54687 -22.41780 -20.95697 -19.51236 -18.13358 -17.34519 -16.98118 -16.65957 -16.51712 -15.77238 -15.28240 -14.75353 -14.55852 -14.34782 -13.99407 -13.63900 -13.41909 -13.17773 -13.00948 -12.88101 -12.52946 -12.31664 -12.13499 -11.79146 -11.50291 -11.39208 -11.26736 -11.08345 -10.00920 -9.10502 -8.85860 -8.47520 -6.44497 -0.03117 0.82615 0.84029 1.15130 1.33660 1.41045 1.49594 1.55179 2.11976 2.51665 3.44258 3.76788 4.07477 4.17430 4.30734 4.47136 4.62872 4.72582 4.86266 4.98037 5.01017 5.01674 5.11013 5.20352 5.35116 5.42919 5.46182 5.79970 5.86483 6.04352 6.13662 6.48629 6.64429 6.79544 8.07246 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.010860 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.932393 B = 2577.597962 C = 4079.214572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.022 4.022 4 C -0.230 4.230 5 C -0.082 4.082 6 S 0.107 5.893 7 C -0.319 4.319 8 C 0.128 3.872 9 F -0.144 7.144 10 C -0.267 4.267 11 C 0.128 3.872 12 C -0.458 4.458 13 H 0.080 0.920 14 C 0.038 3.962 15 N -0.790 5.790 16 Si 0.985 3.015 17 H -0.262 1.262 18 H -0.260 1.260 19 H -0.253 1.253 20 C -0.206 4.206 21 H 0.078 0.922 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.186 0.814 28 H 0.299 0.701 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.715 -1.465 3.364 4.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.025 4.025 4 C -0.255 4.255 5 C -0.197 4.197 6 S 0.367 5.633 7 C -0.453 4.453 8 C 0.097 3.903 9 F -0.123 7.123 10 C -0.273 4.273 11 C 0.123 3.877 12 C -0.485 4.485 13 H 0.099 0.901 14 C -0.182 4.182 15 N -0.412 5.412 16 Si 0.805 3.195 17 H -0.185 1.185 18 H -0.184 1.184 19 H -0.176 1.176 20 C -0.228 4.228 21 H 0.097 0.903 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.139 0.861 27 H 0.204 0.796 28 H 0.111 0.889 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.617 -1.707 4.766 5.698 hybrid contribution 0.384 0.861 -2.457 2.632 sum -2.233 -0.845 2.309 3.321 Atomic orbital electron populations 1.21655 0.93798 1.02294 1.01498 1.20543 0.96931 0.91521 1.02515 1.19745 0.94561 0.96029 0.92183 1.19698 1.15476 0.92935 0.97438 1.22357 1.03278 0.98810 0.95228 1.83027 1.71248 1.02928 1.06094 1.24783 1.19825 1.06348 0.94324 1.16560 1.01453 0.87709 0.84561 1.91368 1.91113 1.69858 1.59922 1.19288 1.17531 0.95152 0.95289 1.18779 0.86778 0.92274 0.89879 1.20003 1.39068 0.95829 0.93555 0.90142 1.26897 0.91036 0.94997 1.05254 1.69847 1.27085 1.09946 1.34368 0.85100 0.79686 0.79555 0.75204 1.18538 1.18406 1.17644 1.20892 1.08884 0.95980 0.97003 0.90315 0.92674 0.94034 0.91774 0.90117 0.86100 0.79642 0.88949 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.89 71.98 0.71 -3.19 15 2 C -0.08 -2.62 6.03 29.85 0.18 -2.44 15 3 C -0.02 -0.97 5.11 -20.03 -0.10 -1.07 15 4 C -0.23 -9.93 9.64 22.58 0.22 -9.71 15 5 C -0.08 -3.77 6.49 22.97 0.15 -3.62 15 6 S 0.11 3.98 23.29 -56.49 -1.32 2.66 15 7 C -0.32 -12.74 11.11 66.64 0.74 -12.00 15 8 C 0.13 6.15 7.27 21.54 0.16 6.30 15 9 F -0.14 -7.02 15.39 44.97 0.69 -6.33 15 10 C -0.27 -13.81 6.03 -19.92 -0.12 -13.93 15 11 C 0.13 6.98 5.74 -19.65 -0.11 6.87 15 12 C -0.46 -24.61 8.57 23.26 0.20 -24.41 15 13 H 0.08 4.37 6.46 -2.91 -0.02 4.35 15 14 C 0.04 1.83 5.15 85.26 0.44 2.27 15 15 N -0.79 -38.71 11.00 21.83 0.24 -38.47 15 16 Si 0.99 36.63 29.59 68.60 2.03 38.66 15 17 H -0.26 -9.89 7.11 99.48 0.71 -9.19 15 18 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 19 H -0.25 -8.72 7.11 99.48 0.71 -8.01 15 20 C -0.21 -10.42 8.26 22.64 0.19 -10.23 15 21 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.05 1.55 8.14 -2.39 -0.02 1.54 15 23 H 0.04 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.06 2.18 8.07 -2.39 -0.02 2.16 15 25 H 0.08 2.38 8.07 -2.39 -0.02 2.36 15 26 H 0.12 4.49 8.06 -2.91 -0.02 4.47 15 27 H 0.19 6.09 8.06 -2.91 -0.02 6.06 15 28 H 0.30 12.90 8.30 -92.71 -0.77 12.13 15 29 H 0.11 5.83 6.23 -2.92 -0.02 5.81 15 Total: -1.00 -57.86 267.55 5.46 -52.39 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.17 Total: 16.24 kcal Atomic # 6 Polarization: -67.81 SS G_CDS: 2.65 Total: -65.16 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.24 Total: -38.47 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 0.69 Total: -6.33 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.32 Total: 2.66 kcal Total: -57.86 5.46 -52.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321802.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.095 kcal (2) G-P(sol) polarization free energy of solvation -57.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds