Wall clock time and date at job start Mon Mar 30 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47321 * 2 1 4 4 C 1.37624 * 119.63714 * 265.00055 * 3 2 1 5 5 C 1.41452 * 120.96097 * 179.97438 * 4 3 2 6 6 C 1.45480 * 129.11596 * 180.02562 * 5 4 3 7 7 C 1.31873 * 114.88346 * 180.02562 * 6 5 4 8 8 S 1.75301 * 111.32596 * 359.97438 * 7 6 5 9 9 C 1.39346 * 119.04098 * 0.02562 * 5 4 3 10 10 C 1.42154 * 119.72012 * 0.02562 * 9 5 4 11 11 C 1.40851 * 120.12834 * 180.02562 * 10 9 5 12 12 H 1.07996 * 120.00308 * 36.98760 * 11 10 9 13 13 C 1.39895 * 120.00061 * 216.98070 * 11 10 9 14 14 N 1.30916 * 119.99630 * 19.67731 * 13 11 10 15 15 Si 1.86799 * 120.00509 * 199.67366 * 13 11 10 16 16 H 1.48502 * 109.46732 * 59.99998 * 15 13 11 17 17 H 1.48497 * 109.47537 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.46972 * 300.00552 * 15 13 11 19 19 C 1.38216 * 119.63555 * 84.72427 * 3 2 1 20 20 F 1.35108 * 120.09253 * 0.02562 * 19 3 2 21 21 H 1.08999 * 109.47033 * 60.00238 * 1 2 3 22 22 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47158 * 299.99406 * 1 2 3 24 24 H 1.09000 * 109.47334 * 120.00214 * 2 1 3 25 25 H 1.09001 * 109.47429 * 239.99913 * 2 1 3 26 26 H 1.08004 * 119.52318 * 359.97438 * 4 3 2 27 27 H 1.07994 * 122.55438 * 359.97438 * 6 5 4 28 28 H 1.08000 * 124.33845 * 180.02562 * 7 6 5 29 29 H 0.97001 * 119.99856 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3575 2.0276 -1.1916 5 6 2.8311 3.3601 -1.2242 6 6 3.2222 4.1674 -2.3696 7 6 3.6266 5.3878 -2.0761 8 16 3.5698 5.6801 -0.3485 9 6 2.9671 4.0591 -0.0265 10 6 2.6306 3.4262 1.2010 11 6 2.7643 4.1249 2.4167 12 1 2.5325 5.1787 2.4622 13 6 3.1972 3.4538 3.5653 14 7 3.8356 2.3160 3.4570 15 14 2.8646 4.1811 5.2534 16 1 1.3997 4.3228 5.4514 17 1 3.4213 3.2839 6.2975 18 1 3.5088 5.5154 5.3531 19 6 2.1560 2.1019 1.1963 20 9 1.8283 1.4954 2.3582 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.2495 1.4786 -2.1154 27 1 3.1849 3.7953 -3.3827 28 1 3.9505 6.1144 -2.8065 29 1 4.1362 1.8508 4.2534 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396321803.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:50 Heat of formation + Delta-G solvation = -22.265222 kcal Electronic energy + Delta-G solvation = -15915.068185 eV Core-core repulsion = 13229.133492 eV Total energy + Delta-G solvation = -2685.934692 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.98905 -38.06606 -34.75302 -34.21414 -31.85255 -29.38409 -27.44586 -25.46620 -23.27507 -21.91522 -20.91211 -18.93726 -17.46073 -16.64636 -15.70613 -15.03502 -14.80586 -14.18748 -13.77185 -13.59490 -13.13475 -12.84037 -12.40829 -12.22483 -12.05320 -11.72191 -11.61974 -11.38015 -11.20019 -10.96195 -10.74922 -10.47741 -10.34341 -10.03200 -9.64677 -9.33887 -9.08810 -8.27467 -7.09942 -6.96116 -6.67458 -4.50034 1.83856 2.47186 2.60328 3.00872 3.05933 3.09559 3.14565 3.37051 3.90660 4.48699 5.15610 5.37787 5.62682 5.63428 5.92195 5.98065 6.03451 6.16872 6.29951 6.37375 6.40201 6.63889 6.68093 6.73521 6.98090 7.07701 7.30167 7.40922 7.46097 7.66067 7.95531 8.27586 8.61229 8.70033 10.09605 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.012026 C = 0.007417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.596508 B = 2327.687155 C = 3774.346911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C -0.081 4.081 4 C -0.181 4.181 5 C -0.063 4.063 6 C -0.120 4.120 7 C -0.218 4.218 8 S 0.055 5.945 9 C -0.181 4.181 10 C 0.121 3.879 11 C -0.463 4.463 12 H 0.085 0.915 13 C 0.081 3.919 14 N -0.770 5.770 15 Si 0.911 3.089 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.264 1.264 19 C 0.035 3.965 20 F -0.137 7.137 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.150 0.850 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 0.085 -4.780 5.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.083 4.083 4 C -0.203 4.203 5 C -0.070 4.070 6 C -0.152 4.152 7 C -0.352 4.352 8 S 0.317 5.683 9 C -0.296 4.296 10 C 0.115 3.885 11 C -0.492 4.492 12 H 0.103 0.897 13 C -0.141 4.141 14 N -0.392 5.392 15 Si 0.735 3.265 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.189 1.189 19 C 0.011 3.989 20 F -0.116 7.116 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.144 0.856 28 H 0.168 0.832 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.472 1.165 -3.743 4.187 hybrid contribution -0.329 -1.043 0.039 1.094 sum -1.800 0.122 -3.704 4.120 Atomic orbital electron populations 1.21690 0.95589 1.00497 1.02063 1.20339 0.95557 0.93681 1.01769 1.19196 1.01412 0.95259 0.92447 1.19790 1.11319 0.93557 0.95679 1.18964 1.02283 0.94886 0.90889 1.20872 1.02255 0.93791 0.98284 1.24889 1.09547 1.00835 0.99935 1.83610 1.71320 1.14242 0.99125 1.22393 1.13175 0.97436 0.96624 1.16774 0.90496 0.90452 0.90814 1.19250 1.39985 0.97455 0.92479 0.89662 1.25790 0.92556 0.94286 1.01436 1.69784 1.23269 1.13430 1.32750 0.86302 0.80183 0.79696 0.80359 1.18605 1.20160 1.18892 1.17167 1.08649 0.93104 0.79994 1.91309 1.90156 1.82716 1.47422 0.92903 0.93375 0.92575 0.91537 0.91995 0.87951 0.85558 0.83210 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.89 37.16 0.37 -1.94 15 2 C -0.08 -1.42 5.81 -27.89 -0.16 -1.58 15 3 C -0.08 -1.83 5.11 -104.86 -0.54 -2.37 15 4 C -0.18 -3.94 9.70 -38.58 -0.37 -4.31 15 5 C -0.06 -1.42 6.04 -105.38 -0.64 -2.06 15 6 C -0.12 -2.26 10.39 -38.60 -0.40 -2.66 15 7 C -0.22 -3.91 11.03 28.83 0.32 -3.59 15 8 S 0.05 1.14 22.95 -107.50 -2.47 -1.33 15 9 C -0.18 -4.44 6.36 -37.67 -0.24 -4.68 15 10 C 0.12 3.23 5.41 -106.49 -0.58 2.65 15 11 C -0.46 -12.33 8.65 -37.97 -0.33 -12.66 15 12 H 0.09 2.20 7.92 -52.49 -0.42 1.78 15 13 C 0.08 2.06 4.49 -17.32 -0.08 1.98 15 14 N -0.77 -20.32 11.16 55.55 0.62 -19.70 15 15 Si 0.91 19.12 29.60 -169.99 -5.03 14.09 15 16 H -0.26 -5.48 7.11 56.52 0.40 -5.07 15 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 18 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 19 C 0.04 0.91 6.61 -38.67 -0.26 0.65 15 20 F -0.14 -3.63 13.55 2.25 0.03 -3.60 15 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 15 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.07 1.28 7.77 -51.93 -0.40 0.88 15 25 H 0.06 1.02 8.03 -51.93 -0.42 0.60 15 26 H 0.10 1.92 8.04 -52.48 -0.42 1.50 15 27 H 0.13 1.98 8.06 -52.49 -0.42 1.56 15 28 H 0.15 2.13 8.06 -52.49 -0.42 1.70 15 29 H 0.29 6.92 8.30 -40.82 -0.34 6.58 15 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -27.95 268.67 -8.61 -36.56 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -2.91 Total: 0.50 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -2.90 Total: -30.56 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.62 Total: -19.70 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.03 Total: -3.60 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.47 Total: -1.33 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.95 -8.61 -36.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321803.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.296 kcal (2) G-P(sol) polarization free energy of solvation -27.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds