Wall clock time and date at job start Mon Mar 30 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47321 * 2 1 4 4 C 1.37624 * 119.63714 * 265.00055 * 3 2 1 5 5 C 1.41452 * 120.96097 * 179.97438 * 4 3 2 6 6 C 1.45480 * 129.11596 * 180.02562 * 5 4 3 7 7 C 1.31873 * 114.88346 * 180.02562 * 6 5 4 8 8 S 1.75301 * 111.32596 * 359.97438 * 7 6 5 9 9 C 1.39346 * 119.04098 * 0.02562 * 5 4 3 10 10 C 1.42154 * 119.72012 * 0.02562 * 9 5 4 11 11 C 1.40851 * 120.12834 * 180.02562 * 10 9 5 12 12 H 1.07996 * 120.00308 * 36.98760 * 11 10 9 13 13 C 1.39895 * 120.00061 * 216.98070 * 11 10 9 14 14 N 1.30916 * 119.99630 * 19.67731 * 13 11 10 15 15 Si 1.86799 * 120.00509 * 199.67366 * 13 11 10 16 16 H 1.48502 * 109.46732 * 59.99998 * 15 13 11 17 17 H 1.48497 * 109.47537 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.46972 * 300.00552 * 15 13 11 19 19 C 1.38216 * 119.63555 * 84.72427 * 3 2 1 20 20 F 1.35108 * 120.09253 * 0.02562 * 19 3 2 21 21 H 1.08999 * 109.47033 * 60.00238 * 1 2 3 22 22 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47158 * 299.99406 * 1 2 3 24 24 H 1.09000 * 109.47334 * 120.00214 * 2 1 3 25 25 H 1.09001 * 109.47429 * 239.99913 * 2 1 3 26 26 H 1.08004 * 119.52318 * 359.97438 * 4 3 2 27 27 H 1.07994 * 122.55438 * 359.97438 * 6 5 4 28 28 H 1.08000 * 124.33845 * 180.02562 * 7 6 5 29 29 H 0.97001 * 119.99856 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3575 2.0276 -1.1916 5 6 2.8311 3.3601 -1.2242 6 6 3.2222 4.1674 -2.3696 7 6 3.6266 5.3878 -2.0761 8 16 3.5698 5.6801 -0.3485 9 6 2.9671 4.0591 -0.0265 10 6 2.6306 3.4262 1.2010 11 6 2.7643 4.1249 2.4167 12 1 2.5325 5.1787 2.4622 13 6 3.1972 3.4538 3.5653 14 7 3.8356 2.3160 3.4570 15 14 2.8646 4.1811 5.2534 16 1 1.3997 4.3228 5.4514 17 1 3.4213 3.2839 6.2975 18 1 3.5088 5.5154 5.3531 19 6 2.1560 2.1019 1.1963 20 9 1.8283 1.4954 2.3582 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.2495 1.4786 -2.1154 27 1 3.1849 3.7953 -3.3827 28 1 3.9505 6.1144 -2.8065 29 1 4.1362 1.8508 4.2534 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396321803.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:49 Heat of formation + Delta-G solvation = -36.040306 kcal Electronic energy + Delta-G solvation = -15915.665517 eV Core-core repulsion = 13229.133492 eV Total energy + Delta-G solvation = -2686.532025 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.93848 -39.78107 -36.33557 -36.00689 -33.52313 -31.08298 -29.08896 -27.33514 -24.84651 -23.52041 -22.63731 -20.56944 -19.29023 -18.39854 -17.46804 -16.83558 -16.54252 -15.91362 -15.53127 -15.08259 -14.67663 -14.54125 -14.07159 -13.81926 -13.71498 -13.46320 -13.22110 -13.09083 -12.86157 -12.72634 -12.31269 -12.07050 -11.83342 -11.61885 -11.34525 -11.06458 -10.89023 -10.01767 -8.85974 -8.81894 -8.42351 -6.44570 0.18921 0.68257 1.00268 1.30861 1.36406 1.44038 1.50422 1.70641 2.16116 2.66729 3.30305 3.88495 4.08150 4.15717 4.37094 4.50120 4.56499 4.63514 4.80369 4.90311 5.02464 5.10079 5.13409 5.20291 5.31178 5.39060 5.57102 5.66839 5.70743 5.90130 6.11580 6.38334 6.72921 6.81036 8.25368 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.012026 C = 0.007417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.596508 B = 2327.687155 C = 3774.346911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 C -0.088 4.088 4 C -0.174 4.174 5 C -0.076 4.076 6 C -0.126 4.126 7 C -0.194 4.194 8 S 0.037 5.963 9 C -0.216 4.216 10 C 0.088 3.912 11 C -0.500 4.500 12 H 0.078 0.922 13 C 0.041 3.959 14 N -0.809 5.809 15 Si 0.975 3.025 16 H -0.263 1.263 17 H -0.265 1.265 18 H -0.255 1.255 19 C -0.002 4.002 20 F -0.152 7.152 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.169 0.831 28 H 0.197 0.803 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 0.101 -7.074 7.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 C -0.091 4.091 4 C -0.196 4.196 5 C -0.084 4.084 6 C -0.157 4.157 7 C -0.328 4.328 8 S 0.299 5.701 9 C -0.331 4.331 10 C 0.082 3.918 11 C -0.529 4.529 12 H 0.096 0.904 13 C -0.176 4.176 14 N -0.433 5.433 15 Si 0.795 3.205 16 H -0.187 1.187 17 H -0.189 1.189 18 H -0.179 1.179 19 C -0.026 4.026 20 F -0.130 7.130 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.158 0.842 27 H 0.187 0.813 28 H 0.214 0.786 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.608 1.180 -6.056 6.376 hybrid contribution -0.277 -1.029 0.518 1.185 sum -1.885 0.151 -5.538 5.852 Atomic orbital electron populations 1.21640 0.93794 1.02367 1.01358 1.20413 0.97049 0.91235 1.02461 1.19674 1.00599 0.97111 0.91682 1.20300 1.09115 0.93521 0.96640 1.19588 1.01583 0.95519 0.91700 1.21157 1.02143 0.93500 0.98908 1.25365 1.07660 1.01459 0.98272 1.83599 1.71348 1.12722 1.02473 1.22791 1.13947 0.99455 0.96921 1.17184 0.91184 0.91476 0.91955 1.19397 1.42236 0.97406 0.93819 0.90441 1.26590 0.91701 0.94555 1.04748 1.69835 1.24784 1.14971 1.33734 0.85347 0.79829 0.79358 0.75951 1.18699 1.18932 1.17929 1.17601 1.10520 0.93709 0.80754 1.91249 1.90497 1.82906 1.48388 0.91919 0.90210 0.94938 0.93011 0.89030 0.84210 0.81340 0.78590 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.89 71.98 0.71 -3.46 15 2 C -0.07 -2.67 5.81 29.85 0.17 -2.50 15 3 C -0.09 -3.98 5.11 -20.02 -0.10 -4.08 15 4 C -0.17 -7.21 9.70 22.92 0.22 -6.98 15 5 C -0.08 -3.30 6.04 -20.35 -0.12 -3.43 15 6 C -0.13 -4.27 10.39 23.32 0.24 -4.03 15 7 C -0.19 -6.23 11.03 67.00 0.74 -5.49 15 8 S 0.04 1.52 22.95 -56.49 -1.30 0.22 15 9 C -0.22 -10.73 6.36 23.51 0.15 -10.58 15 10 C 0.09 4.89 5.41 -21.07 -0.11 4.78 15 11 C -0.50 -27.97 8.65 23.31 0.20 -27.77 15 12 H 0.08 4.24 7.92 -2.91 -0.02 4.22 15 13 C 0.04 2.20 4.49 85.23 0.38 2.58 15 14 N -0.81 -44.69 11.16 21.82 0.24 -44.45 15 15 Si 0.97 40.54 29.60 68.60 2.03 42.57 15 16 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 17 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 19 C 0.00 -0.10 6.61 22.86 0.15 0.05 15 20 F -0.15 -8.43 13.55 44.97 0.61 -7.82 15 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 15 24 H 0.05 2.00 7.77 -2.39 -0.02 1.98 15 25 H 0.09 2.72 8.03 -2.39 -0.02 2.70 15 26 H 0.14 4.64 8.04 -2.91 -0.02 4.62 15 27 H 0.17 4.28 8.06 -2.91 -0.02 4.26 15 28 H 0.20 4.45 8.06 -2.91 -0.02 4.43 15 29 H 0.29 14.64 8.30 -92.71 -0.77 13.87 15 Total: -1.00 -64.05 268.67 5.38 -58.66 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.16 Total: 11.74 kcal Atomic # 6 Polarization: -63.55 SS G_CDS: 2.63 Total: -60.92 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.24 Total: -44.45 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 0.61 Total: -7.82 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.30 Total: 0.22 kcal Total: -64.05 5.38 -58.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396321803.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.623 kcal (2) G-P(sol) polarization free energy of solvation -64.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds