Wall clock time and date at job start Mon Mar 30 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47399 * 2 1 4 4 C 1.38656 * 119.90793 * 89.99606 * 3 2 1 5 5 C 1.37437 * 120.25368 * 180.02562 * 4 3 2 6 6 C 1.40607 * 120.31077 * 359.97438 * 5 4 3 7 7 C 1.39358 * 119.24960 * 0.02602 * 6 5 4 8 8 C 1.37649 * 119.90279 * 270.01953 * 3 2 1 9 9 S 1.75787 * 110.24720 * 180.02562 * 7 6 5 10 10 C 1.69979 * 93.26167 * 359.96195 * 9 7 6 11 11 F 1.35101 * 124.04873 * 180.02562 * 10 9 7 12 12 C 1.36886 * 111.90180 * 0.02562 * 10 9 7 13 13 C 1.40756 * 123.33207 * 179.97438 * 12 10 9 14 14 H 1.07996 * 119.99773 * 140.47885 * 13 12 10 15 15 C 1.39637 * 120.00085 * 320.46743 * 13 12 10 16 16 N 1.31167 * 119.99661 * 158.92346 * 15 13 12 17 17 Si 1.86795 * 120.00132 * 338.93218 * 15 13 12 18 18 H 1.48503 * 109.47241 * 95.59450 * 17 15 13 19 19 H 1.48508 * 109.47086 * 215.59258 * 17 15 13 20 20 H 1.48496 * 109.47595 * 335.59316 * 17 15 13 21 21 H 1.09005 * 109.47308 * 300.00562 * 1 2 3 22 22 H 1.09001 * 109.46929 * 60.00248 * 1 2 3 23 23 H 1.09000 * 109.47568 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47483 * 239.99320 * 2 1 3 25 25 H 1.09001 * 109.46929 * 119.99752 * 2 1 3 26 26 H 1.07997 * 119.86977 * 0.02562 * 4 3 2 27 27 H 1.07992 * 119.83899 * 179.69995 * 5 4 3 28 28 H 1.08006 * 119.80617 * 0.02562 * 8 3 2 29 29 H 0.97004 * 119.99711 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0725 1.2019 5 6 2.7204 3.3684 1.2102 6 6 2.9595 4.0444 0.0006 7 6 2.7266 3.3855 -1.2051 8 6 2.2607 2.0678 -1.1932 9 16 3.1014 4.4430 -2.5584 10 6 3.5567 5.7332 -1.5498 11 9 3.9808 6.9336 -2.0020 12 6 3.4422 5.4103 -0.2245 13 6 3.7570 6.3013 0.8187 14 1 3.1383 6.3374 1.7031 15 6 4.8695 7.1382 0.7102 16 7 4.9454 8.2260 1.4392 17 14 6.2494 6.7089 -0.4734 18 1 6.0427 7.4276 -1.7564 19 1 7.5511 7.1133 0.1162 20 1 6.2517 5.2447 -0.7210 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.0819 1.5599 2.1351 27 1 2.8930 3.8714 2.1502 28 1 2.0784 1.5545 -2.1258 29 1 5.7181 8.8076 1.3636 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396322534.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:14 Heat of formation + Delta-G solvation = -20.670996 kcal Electronic energy + Delta-G solvation = -15547.486375 eV Core-core repulsion = 12861.620814 eV Total energy + Delta-G solvation = -2685.865561 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.42427 -39.02239 -35.52647 -33.42342 -31.85702 -30.35501 -27.96270 -25.91722 -23.55015 -22.09496 -21.00731 -19.64663 -17.44703 -17.28808 -15.49547 -15.35290 -15.14981 -14.60452 -14.24869 -13.78129 -13.39871 -13.29416 -13.06823 -12.87859 -12.55385 -12.09273 -12.02731 -11.47359 -11.29189 -10.96565 -10.75608 -10.53956 -10.26868 -10.06475 -9.75099 -9.47449 -9.14253 -8.68634 -7.49615 -6.98713 -6.91998 -4.54220 1.50797 1.81913 2.35305 2.93079 3.06886 3.25897 3.30360 3.41855 4.06670 4.25949 4.91176 4.97424 5.10036 5.39646 5.43909 5.47330 5.66955 5.79823 5.85368 5.95398 6.09018 6.23717 6.28428 6.53590 6.64526 6.74123 6.97901 7.05770 7.28786 7.31551 7.52967 8.14560 8.33850 8.67034 10.02655 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032729 B = 0.007767 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.297839 B = 3604.262141 C = 4106.442386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.083 4.083 4 C -0.134 4.134 5 C -0.065 4.065 6 C -0.054 4.054 7 C -0.123 4.123 8 C -0.093 4.093 9 S 0.059 5.941 10 C -0.239 4.239 11 F -0.118 7.118 12 C 0.058 3.942 13 C -0.426 4.426 14 H 0.097 0.903 15 C 0.092 3.908 16 N -0.801 5.801 17 Si 0.913 3.087 18 H -0.258 1.258 19 H -0.294 1.294 20 H -0.253 1.253 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.915 -12.110 -2.019 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.085 4.085 4 C -0.155 4.155 5 C -0.084 4.084 6 C -0.063 4.063 7 C -0.238 4.238 8 C -0.117 4.117 9 S 0.318 5.682 10 C -0.372 4.372 11 F -0.098 7.098 12 C 0.046 3.954 13 C -0.457 4.457 14 H 0.115 0.885 15 C -0.129 4.129 16 N -0.425 5.425 17 Si 0.739 3.261 18 H -0.182 1.182 19 H -0.221 1.221 20 H -0.177 1.177 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.136 0.864 27 H 0.144 0.856 28 H 0.134 0.866 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.810 -11.833 -3.481 12.909 hybrid contribution 0.883 0.640 1.006 1.484 sum -2.927 -11.193 -2.474 11.831 Atomic orbital electron populations 1.21754 0.95099 1.01124 1.02371 1.20453 0.95873 0.92843 1.02362 1.19532 1.00463 0.95774 0.92768 1.20682 1.02853 0.94943 0.97060 1.20902 0.96848 0.93684 0.96988 1.19277 1.00646 0.93889 0.92469 1.22385 1.06381 0.98092 0.96970 1.20152 1.02001 0.92031 0.97475 1.81948 1.73071 1.05314 1.07838 1.20279 1.34385 0.88210 0.94366 1.91152 1.88765 1.41518 1.88352 1.17665 0.95248 0.90774 0.91670 1.18729 1.09931 1.13821 1.03198 0.88483 1.26045 0.99740 0.92191 0.94890 1.69838 1.29110 1.08169 1.35388 0.86364 0.77559 0.81622 0.80603 1.18248 1.22119 1.17658 0.92522 0.92572 0.92856 0.91432 0.91272 0.86370 0.85607 0.86603 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 37.16 0.37 -1.12 15 2 C -0.08 -0.88 6.06 -27.89 -0.17 -1.05 15 3 C -0.08 -1.26 5.13 -104.69 -0.54 -1.80 15 4 C -0.13 -2.14 9.67 -39.72 -0.38 -2.53 15 5 C -0.06 -1.25 9.86 -38.98 -0.38 -1.64 15 6 C -0.05 -1.22 6.02 -105.21 -0.63 -1.86 15 7 C -0.12 -2.55 6.44 -38.59 -0.25 -2.80 15 8 C -0.09 -1.58 9.71 -39.22 -0.38 -1.96 15 9 S 0.06 1.26 22.96 -107.50 -2.47 -1.21 15 10 C -0.24 -6.17 6.37 30.24 0.19 -5.97 15 11 F -0.12 -3.21 13.14 2.25 0.03 -3.18 15 12 C 0.06 1.50 4.86 -106.06 -0.52 0.98 15 13 C -0.43 -11.69 9.46 -38.11 -0.36 -12.06 15 14 H 0.10 2.71 8.06 -52.49 -0.42 2.28 15 15 C 0.09 2.50 5.16 -17.31 -0.09 2.41 15 16 N -0.80 -21.95 13.95 55.54 0.77 -21.17 15 17 Si 0.91 22.61 24.71 -169.99 -4.20 18.41 15 18 H -0.26 -6.48 6.19 56.52 0.35 -6.13 15 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 20 H -0.25 -6.38 7.11 56.52 0.40 -5.98 15 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 15 24 H 0.07 0.70 8.08 -51.93 -0.42 0.28 15 25 H 0.07 0.70 8.08 -51.93 -0.42 0.28 15 26 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.13 2.34 8.06 -52.49 -0.42 1.92 15 28 H 0.12 1.69 8.06 -52.48 -0.42 1.27 15 29 H 0.29 7.15 8.30 -40.82 -0.34 6.81 15 LS Contribution 264.91 15.07 3.99 3.99 Total: -1.00 -28.81 264.91 -8.00 -36.81 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: -2.99 Total: -4.27 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -3.14 Total: -29.38 kcal Atomic # 7 Polarization: -21.95 SS G_CDS: 0.77 Total: -21.17 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.03 Total: -3.18 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.20 Total: 18.41 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.47 Total: -1.21 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.81 -8.00 -36.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396322534.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.135 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds